Name: Sphingomonas mucosissima CP 173-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14249

Type strain:

Species: Sphingomonas mucosissima

Strain Designation: CP 173-2, CP173-2

Culture col. no.: DSM 17494, ATCC BAA-1239, CIP 110409

Strain history: CIP <- 2012, DSMZ <- F. Garcia-Pichel, Arizone state Univ., USA <- G.S.N. Reddy: strain CP173-2

NCBI tax ID(s): 370959 (species)

SI-ID 308626

ATCC BAA-1239, DSM 17494, CIP 110409

Section

Sphingomonas mucosissima CP 173-2 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from soil crusts.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas mucosissima**
	Full Scientific Name (LPSN)	Sphingomonas mucosissima Reddy and Garcia-Pichel 2007

Information on morphological and physiological properties Morphology

[Ref.: #31806]	Gram stain	negative
[Ref.: #121166]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.984

[Ref.: #31806]	Cell length	1.7 µm

[Ref.: #31806]	Cell width	0.75 µm

[Ref.: #31806]	Cell shape	rod-shaped
[Ref.: #121166]	Cell shape	rod-shaped

[Ref.: #31806]	Motility	no
[Ref.: #121166]	Motility	yes

[Ref.: #31806]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7021]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #7021]

Culture medium growth

[Ref.: #7021]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7021]

Culture medium composition

expand / minimize

[Ref.: #36907]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #36907]

Culture medium growth

[Ref.: #36907]

Culture medium composition

expand / minimize

[Ref.: #121166]

Culture medium

CIP Medium 328

[Ref.: #121166]

Culture medium growth

[Ref.: #121166]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7021]	growth	28 °C
[Ref.: #31806]	growth	15-30 °C
[Ref.: #31806]	optimum	25 °C
[Ref.: #36907]	growth	25 °C

[Ref.: #7021]	Temperature range	mesophilic
[Ref.: #31806]	Temperature range	mesophilic
[Ref.: #36907]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31806]			optimum	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.937

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31806]		NaCl		growth	0-2.5	%
[Ref.: #31806]		NaCl		optimum	1.25	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31806]	acetate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #31806]	alanine ChEBI	+	carbon source
[Ref.: #31806]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31806]	cellobiose ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #31806]	fructose ChEBI	+	carbon source
[Ref.: #31806]	galactose ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #31806]	glucose ChEBI	+	carbon source
[Ref.: #31806]	glycerol ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #31806]	melibiose ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #31806]	pyruvate ChEBI	+	carbon source
[Ref.: #31806]	ribose ChEBI	+	carbon source
[Ref.: #31806]	sucrose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31806]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #31806]	catalase	+	1.11.1.6
[Ref.: #31806]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #7021]	23426	+	-	-	-	-	+	-	-	+	-	-	-	-	-	+	-	+	-	-	-	+
[Ref.: #7021]	23231	-	-	-	-	-	+	-	-	+	-	-	-	-	-	+	-	+	-	-	-	+
[Ref.: #7021]	23153	-	-	-	-	-	+	+	-	+	-	-	-	-	-	+	-	+	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7021]	Sample type/isolated from	soil crusts
[Ref.: #7021]	Geographic location (country and/or sea, region)	Colorado Plateau
[Ref.: #7021]	Country	USA
[Ref.: #7021]	Country ISO 3 Code	USA
[Ref.: #7021]	Continent	North America

[Ref.: #121166]	Sample type/isolated from	Environment, Soil crusts
[Ref.: #121166]	Geographic location (country and/or sea, region)	Colorado canyon
[Ref.: #121166]	Country	United States of America
[Ref.: #121166]	Country ISO 3 Code	USA
[Ref.: #121166]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM229669 (>99% sequence identity) for Sphingomonas sp. from Microbeatlas

Aquatic Samples	193
Soil Samples	246
Animal Samples	716
Plant Samples	60
Total Samples	1215

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7021]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121166]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7021]	Sphingomonas mucosissima partial 16S rRNA gene, type strain CP173-2	AM229669	1410	ENA	370959 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingomonas mucosissima DSM 17494	GCA_002197665	contig	GenBank	370959 tax ID	*
[Ref.: #66792]	Sphingomonas mucosissima strain DSM 17494	370959.4	wgs	PATRIC	370959 tax ID	*
[Ref.: #66792]	Sphingomonas mucosissima DSM 17494	2876844424	draft	JGI IMG/M	370959 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphingomonas mucosissima strain DSM 17494 PATRIC: 370959.4
[Ref.: #69481]	spore-forming	no	83	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingomonas mucosissima strain DSM 17494 PATRIC: 370959.4
[Ref.: #69480]	gram-positive	no	97.783	yes
[Ref.: #69480]	anaerobic	no	98.828	no
[Ref.: #69480]	halophile	no	92.8	no
[Ref.: #69480]	spore-forming	no	96.122	no
[Ref.: #69480]	glucose-util	yes	85.072	yes
[Ref.: #69480]	aerobic	yes	93.944	no
[Ref.: #69480]	motile	yes	64.49	yes
[Ref.: #69480]	flagellated	no	90.939	yes
[Ref.: #69480]	thermophile	no	98.469	yes
[Ref.: #69480]	glucose-ferment	no	91.635	yes

Availability in culture collections External links

[Ref.: #7021]

Culture collection no.

DSM 17494, ATCC BAA-1239, CIP 110409

[Ref.: #83408]

SI-ID 308626

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas radiodurans sp. nov., a novel radiation-resistant bacterium isolated from the north slope of Mount Everest.	Liu Y, Chen T, Cui X, Xu Y, Hu S, Zhao Y, Zhang W, Liu G, Zhang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.005312	2022	*
Phylogeny	Sphingomonas floccifaciens sp. nov., isolated from subterranean sediment.	Fan QM, Zhang RG, Chen HY, Feng QQ, Lv J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002983	2018	*
Phylogeny	Sphingomonas jeddahensis sp. nov., isolated from Saudi Arabian desert soil.	Wubbeler JH, Oppermann-Sanio FB, Ockenfels A, Rottig A, Osthaar-Ebker A, Verbarg S, Poehlein A, Madkour MH, Al-Ansari AM, Almakishah NH, Daniel R, Steinbuchel A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002249	2017	*
Genetics	Draft Genome Sequences of Sphingomonas mucosissima DSM 17494 and Sphingomonas dokdonensis DSM 21029.	Poehlein A, Wubbeler JH, Daniel R, Steinbuchel A	Genome Announc	10.1128/genomeA.00889-17	2017	*
Phylogeny	Sphingomonas olei sp. nov., with the ability to degrade aliphatic hydrocarbons, isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002010	2017	*
Phylogeny	Sphingomonas panaciterrae sp. nov., a plant growth-promoting bacterium isolated from soil of a ginseng field.	Sukweenadhi J, Kim YJ, Kang CH, Farh Mel-A, Nguyen NL, Hoang VA, Choi ES, Yang DC	Arch Microbiol	10.1007/s00203-015-1134-z	2015	*
Phylogeny	Sphingomonas mucosissima sp. nov. and Sphingomonas desiccabilis sp. nov., from biological soil crusts in the Colorado Plateau, USA.	Reddy GSN, Garcia-Pichel F	Int J Syst Evol Microbiol	10.1099/ijs.0.64331-0	2007	*

References

#7021

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17494

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31806

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28075 (see below)

#36907 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83408

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID308626.1 )

#121166 Collection of Institut Pasteur ; Curators of the CIP; CIP 110409

#28075

IJSEM 1028 2007 ( DOI 10.1099/ijs.0.64331-0 , PubMed 17473253 )

* These data were automatically processed and therefore are not curated

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Sphingomonas mucosissima strain DSM 17494

Sphingomonas mucosissima strain DSM 17494

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