Name: Sphingomonas yunnanensis DSM 17000
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14244

Type strain:

Species: Sphingomonas yunnanensis

Culture col. no.: DSM 17000, CCTCC AB 204064, KCTC 12346, YIM 003, CIP 110397

Strain history: CIP <- 2013, KCTC <- strain YIM 003

NCBI tax ID(s): 310400 (species)

SI-ID 134965

KCTC 12346, DSM 17000

Section

Sphingomonas yunnanensis DSM 17000 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from plate contamination.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas yunnanensis**
	Full Scientific Name (LPSN)	Sphingomonas yunnanensis Zhang et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31504]	Gram stain	negative
[Ref.: #124019]	Gram stain	negative

[Ref.: #31504]	Cell length	0.9 µm

[Ref.: #31504]	Cell width	0.55 µm

[Ref.: #31504]	Cell shape	rod-shaped
[Ref.: #124019]	Cell shape	rod-shaped

[Ref.: #31504]	Motility	yes
[Ref.: #124019]	Motility	no

[Ref.: #31504]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6682]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #6682]

Culture medium growth

[Ref.: #6682]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6682]

Culture medium composition

expand / minimize

[Ref.: #36540]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #36540]

Culture medium growth

[Ref.: #36540]

Culture medium composition

expand / minimize

[Ref.: #124019]

Culture medium

CIP Medium 566

[Ref.: #124019]

Culture medium growth

[Ref.: #124019]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #124019]

Culture medium

CIP Medium 116

[Ref.: #124019]

Culture medium growth

[Ref.: #124019]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6682]	growth	28 °C
[Ref.: #31504]	growth	28 °C
[Ref.: #31504]	optimum	28 °C
[Ref.: #36540]	growth	30 °C

[Ref.: #6682]	Temperature range	mesophilic
[Ref.: #31504]	Temperature range	mesophilic
[Ref.: #36540]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31504]			optimum	7.25
[Ref.: #31504]			growth	7-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31504]

Oxygen tolerance

aerobe

[Ref.: #31504]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31504]		NaCl		growth	0-1	%
[Ref.: #31504]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31504]	dextrin ChEBI	+	carbon source
[Ref.: #31504]	esculin ChEBI	+	hydrolysis
[Ref.: #31504]	fructose ChEBI	+	carbon source
[Ref.: #31504]	galactose ChEBI	+	carbon source
[Ref.: #31504]	glucose ChEBI	+	carbon source
[Ref.: #31504]	lactose ChEBI	+	carbon source
[Ref.: #31504]	malonate ChEBI	+	carbon source
[Ref.: #31504]	mannose ChEBI	+	carbon source
[Ref.: #31504]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31504]	nitrate ChEBI	+	reduction
[Ref.: #31504]	ribose ChEBI	+	carbon source
[Ref.: #31504]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31504]	alpha-galactosidase	+	3.2.1.22
[Ref.: #31504]	catalase	+	1.11.1.6
[Ref.: #31504]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6682]	Sample type/isolated from	plate contamination
[Ref.: #6682]	Country	China
[Ref.: #6682]	Country ISO 3 Code	CHN
[Ref.: #6682]	Continent	Asia

[Ref.: #124019]	Sample type/isolated from	Environment, Soil
[Ref.: #124019]	Geographic location (country and/or sea, region)	Yunnan
[Ref.: #124019]	Country	China
[Ref.: #124019]	Country ISO 3 Code	CHN
[Ref.: #124019]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Contaminant
#Engineered	#Laboratory	#Lab enrichment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY894691 (>99% sequence identity) for Sphingomonas from Microbeatlas

Aquatic Samples	29
Soil Samples	47
Animal Samples	48
Plant Samples	118
Total Samples	242

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6682]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #124019]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31504]	Sphingomonas yunnanensis strain YIM 003 16S ribosomal RNA gene, partial sequence	AY894691	1415	GenBank	310400 tax ID

[Ref.: #31504]

GC-content

67.5 mol%

Availability in culture collections External links

[Ref.: #6682]

Culture collection no.

DSM 17000, CCTCC AB 204064, KCTC 12346, YIM 003, CIP 110397

[Ref.: #83403]

SI-ID 134965

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas endophytica sp. nov., isolated from Artemisia annua L.	Huang HY, Li J, Zhao GZ, Zhu WY, Yang LL, Tang HY, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.031484-0	2011	*
Phylogeny	Sphingomonas polyaromaticivorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium from an oil port water sample.	Luo YR, Tian Y, Huang X, Kwon K, Yang SH, Seo HS, Kim SJ, Zheng TL	Int J Syst Evol Microbiol	10.1099/ijs.0.033530-0	2011	*
Phylogeny	Sphingomonas ginsenosidimutans sp. nov., with ginsenoside converting activity.	Choi TE, Liu QM, Yang JE, Sun S, Kim SY, Yi TH, Im WT	J Microbiol	10.1007/s12275-010-0469-z	2011	*
Phylogeny	Sphingomonas yunnanensis sp. nov., a novel gram-negative bacterium from a contaminated plate.	Zhang YQ, Chen YG, Li WJ, Tian XP, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.63697-0	2005	*

References

#6682

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17000

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31504

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27802 (see below)

#36540 ; Curators of the CIP;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83403

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134965.1 )

#124019 Collection of Institut Pasteur ; Curators of the CIP; CIP 110397

#27802

IJSEM 2361 2005 ( DOI 10.1099/ijs.0.63697-0 , PubMed 16280497 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sphingomonas yunnanensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF