Name: Sphingomonas paucimobilis CL 1/70
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14201

Type strain:

Species: Sphingomonas paucimobilis

Strain Designation: CL 1/70

Culture col. no.: DSM 1098, ATCC 29837, NCPPB 3838, NCTC 11030, JCM 7516, CCM 3293, CCUG 31192, CCUG 6518, CDC CL 1/70, CECT 599, CIP 100752, GIFU 2395, IAM 12576, ICPB 4235, IFO 13935, LMG 1227, NBRC 13935, PCM 2585

Strain history: GIFU 2395 <-- NCTC 11030 <-- I. Phillips CL 1/70.

NCBI tax ID(s): 1219050 (strain), 13689 (species)

Other strains from Sphingomonas paucimobilis

Section

Sphingomonas paucimobilis CL 1/70 is a mesophilic bacterium that was isolated from hospital respirator.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas paucimobilis**
	Full Scientific Name (PNU)	Sphingomonas paucimobilis (Holmes et al. 1977) Yabuuchi et al. 1990

Synonym

Pseudomonas paucimobilis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #548]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #548]

Culture medium growth

[Ref.: #548]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #548]

Culture medium composition

expand / minimize

[Ref.: #548]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #548]

Culture medium growth

[Ref.: #548]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #548]

Culture medium composition

expand / minimize

[Ref.: #36454]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36454]

Culture medium growth

[Ref.: #36454]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #548]	growth	30 °C
[Ref.: #36454]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #548]	Temperature range	mesophilic
[Ref.: #36454]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #548]	20551	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #548]	Sample type/isolated from	hospital respirator
[Ref.: #548]	Geographic location (country and/or sea, region)	London
[Ref.: #548]	Country	United Kingdom
[Ref.: #548]	Country ISO 3 Code	GBR
[Ref.: #548]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Hospital respirator
* marker position based on {}

Isolation sources categories

#Infection	#Medical device	-
#Infection	#Medical environment	#Clinic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC069038 (>99% sequence identity) for Sphingomonas paucimobilis from Microbeatlas

Aquatic Samples	244
Soil Samples	195
Animal Samples	345
Plant Samples	158
Total Samples	942

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #548]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Sphingomonas paucimobilis partial 16S rRNA gene, isolate OS-64.a	AM237364	1431	ENA	13689 tax ID	*
[Ref.: #20218]	Sphingomonas paucimobilis 16S small subunit ribosomal RNA gene, partial sequence	U20776	1231	ENA	13689 tax ID	*
[Ref.: #20218]	Sphingomonas paucimobilis strain ATCC 29837 16S ribosomal RNA (rrn) gene, partial sequence	U37337	1414	ENA	13689 tax ID	*
[Ref.: #548]	Sphingomonas paucimobilis partial 16S rRNA gene, type strain DSM 1098T	LN681566	1441	ENA	13689 tax ID
[Ref.: #67770]	Sphingomonas paucimobilis gene for 16S rRNA, partial sequence, strain: NBRC 13935	AB680526	1414	ENA	13689 tax ID
[Ref.: #67770]	Sphingomonas paucimobilis gene for 16S rRNA, partial sequence	D16144	1446	ENA	13689 tax ID
[Ref.: #67770]	Sphingomonas paucimobilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 7516	LC069038	1411	ENA	13689 tax ID
[Ref.: #67770]	Sphingomonas paucimobilis JCM 7516 gene for 16S ribosomal RNA, partial sequence	LC504030	1411	ENA	13689 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingomonas paucimobilis NBRC 13935	1219050.3	wgs	PATRIC	1219050 tax ID	*
[Ref.: #66792]	Sphingomonas paucimobilis strain FDAARGOS_908 strain Not applicable	13689.29	complete	PATRIC	13689 tax ID	*
[Ref.: #66792]	Sphingomonas paucimobilis strain NCTC11030	13689.16	wgs	PATRIC	13689 tax ID	*
[Ref.: #66792]	Sphingomonas paucimobilis NBRC 13935	2600255072	draft	JGI IMG/M	1219050 tax ID	*
[Ref.: #67770]	Sphingomonas paucimobilis NBRC 13935 NBRC 13935	GCA_000739895	contig	GenBank	1219050 tax ID
[Ref.: #67770]	Sphingomonas paucimobilis NCTC11030	GCA_900457515	contig	GenBank	13689 tax ID

[Ref.: #548]	GC-content	65.0 mol%
[Ref.: #548]	GC-content	65.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	63.7 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #548]

Culture collection no.

DSM 1098, ATCC 29837, NCPPB 3838, NCTC 11030, JCM 7516, CCM 3293, CCUG 31192, CCUG 6518, CDC CL 1/70, CECT 599, CIP 100752, GIFU 2395, IAM 12576, ICPB 4235, IFO 13935, LMG 1227, NBRC 13935, PCM 2585

[Ref.: #20218]

Associated Passport(s) in StrainInfo

21701, 21694, 157162, 21708

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phenotype	[Phenotype characteristics of 63 strains of Pseudomonas paucimobilis, mostly of hospital origin].	Richard C	Ann Biol Clin (Paris)		1986	*
Phylogeny	Isolation of an unusual 'lipid A' type glycolipid from Pseudomonas paucimobilis.	Kawahara K, Uchida K, Aida K	Biochim Biophys Acta	10.1016/0005-2760(82)90285-5	1982	*
Phylogeny	The similarities between Pseudomonas paucimobilis and allied bacteria derived from analysis of deoxyribonucleic acids and electrophoretic protein patterns.	Owen RJ, Jackman PJ	J Gen Microbiol	10.1099/00221287-128-12-2945	1982	*
Phylogeny	Aromatic-degrading Sphingomonas isolates from the deep subsurface.	Fredrickson JK, Balkwill DL, Drake GR, Romine MF, Ringelberg DB, White DC	Appl Environ Microbiol	10.1128/aem.61.5.1917-1922.1995	1995	*
Metabolism	Molecular mechanisms of polymyxin B-membrane interactions: direct correlation between surface charge density and self-promoted transport.	Wiese A, Munstermann M, Gutsmann T, Lindner B, Kawahara K, Zahringer U, Seydel U	J Membr Biol	10.1007/s002329900350	1998	*
Enzymology	Complement activation by bacterial surface glycolipids: a study with planar bilayer membranes.	Munstermann M, Wiese A, Brandenburg K, Zahringer U, Brade L, Kawahara K, Seydel U	J Membr Biol	10.1007/s002329900486	1999	*
Phylogeny	Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov., and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov.	Pal R, Bala S, Dadhwal M, Kumar M, Dhingra G, Prakash O, Prabagaran SR, Shivaji S, Cullum J, Holliger C, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.63201-0	2005	*
Phylogeny	Sphingomonas alpina sp. nov., a psychrophilic bacterium isolated from alpine soil.	Margesin R, Zhang DC, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.035964-0	2011	*
Phylogeny	Sphingomonas starnbergensis sp. nov., isolated from a prealpine freshwater lake.	Chen H, Jogler M, Tindall BJ, Klenk HP, Rohde M, Busse HJ, Overmann J	Int J Syst Evol Microbiol	10.1099/ijs.0.042887-0	2012	*
Phylogeny	Sphingomonas aeria sp. nov. from indoor air of a pharmaceutical environment.	Park HK, Han JH, Kim TS, Joung Y, Cho SH, Kwon SW, Kim SB	Antonie Van Leeuwenhoek	10.1007/s10482-014-0302-5	2014	*
	Enantioselective Resolution of (R,S)-Carvedilol to (S)-(-)-Carvedilol by Biocatalysts.	Ettireddy S, Chandupatla V, Veeresham C	Nat Prod Bioprospect	10.1007/s13659-016-0118-2	2017	*
	Characterization of the Aerobic Anoxygenic Phototrophic Bacterium Sphingomonas sp. AAP5.	Kopejtka K, Zeng Y, Kaftan D, Selyanin V, Gardian Z, Tomasch J, Sommaruga R, Koblizek M	Microorganisms	10.3390/microorganisms9040768	2021	*

References

#548	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1098

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36454 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sphingomonas paucimobilis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF