Sphingomonas paucimobilis (DSM 1098, ATCC 29837, NCPPB 3838)

Name: Sphingomonas paucimobilis (DSM 1098, ATCC 29837, NCPPB 3838)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14201

Type strain

Strain Designation CL 1/70

Culture col. no. DSM 1098 ATCC 29837 NCPPB 3838 NCTC 11030 CL 1/70 14 more

NCBI tax ID(s) 1219050 13689

Special Collections DSMZ CCUG JCM CIP

History <- NCTC; NCTC 11030 <- B. Holmes; CL 1/70 GIFU 2395 <-- NCTC 11030 <-- I. Phillips CL 1/70. CIP <- 1984, ATCC <- NCTC, Pseudomonas paucimobilis <- I. Phillis, St Thomas Hosp., London, UK: strain CL 1/70

Links

Sphingomonas paucimobilis CL 1/70 is an obligate aerobe, Gram-negative, rod-shaped bacterium that was isolated from hospital respirator.

Gram-negative rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 72295

IFO 13935,LMG 1227,ATCC 29837,CCM 3293,CCUG 31192,CCUG 6518,CECT 599,CIP 100752,DSM 1098,IAM 12576,JCM 7516,NCTC 11030,NCPPB 3838,NCIMB 13361,CCRC 13893,KCTC 2346,KCTC 2885,NBRC 13935,HAMBI 1744,NCAIM B.01654,BCRC 13893,KACC 10931,NBIMCC 3733,CFBP 3010,VTT E-981071

@ref 20215

Last LPSN update 2026-02-09 11:21:21

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Species Sphingomonas paucimobilis

Full scientific name Sphingomonas paucimobilis (Holmes et al. 1977) Yabuuchi et al. 1990

Synonyms (1)

Pseudomonas paucimobilis

BacDive ID	Other strains from **Sphingomonas paucimobilis** (41)	Type strain
14202	S. paucimobilis DSM 30198, ATCC 10829, CCM 72, CIP 104977, ...
138001	S. paucimobilis CIP 102441
141280	S. paucimobilis CCUG 573
141286	S. paucimobilis CCUG 635 A
141287	S. paucimobilis CCUG 645 A
141291	S. paucimobilis CCUG 717
141360	S. paucimobilis CCUG 1184
143453	S. paucimobilis CCUG 19310
143602	S. paucimobilis CCUG 20552
143940	S. paucimobilis CCUG 22004
143956	S. paucimobilis CCUG 22042
143957	S. paucimobilis CCUG 22051
143984	S. paucimobilis CCUG 22246
144471	S. paucimobilis CCUG 25090
145185	S. paucimobilis CCUG 27841
145186	S. paucimobilis CCUG 27842
145603	S. paucimobilis CCUG 28962
145614	S. paucimobilis CCUG 28990 A
145782	S. paucimobilis CCUG 29573
145986	S. paucimobilis CCUG 30093
146362	S. paucimobilis CCUG 31037
146637	S. paucimobilis CCUG 31690
146638	S. paucimobilis CCUG 31691
146732	S. paucimobilis CCUG 32037
146931	S. paucimobilis CCUG 32467
149593	S. paucimobilis CCUG 38025
149656	S. paucimobilis CCUG 38134
150646	S. paucimobilis CCUG 41852 B
150651	S. paucimobilis CCUG 41858 A
150677	S. paucimobilis CCUG 41946 A
150680	S. paucimobilis CCUG 41951 A
150719	S. paucimobilis CCUG 42046 A
150725	S. paucimobilis CCUG 42077 C
151240	S. paucimobilis CCUG 43523
155549	S. paucimobilis CCUG 58102
165542	S. paucimobilis JCM 7509, GIFU 2406
165543	S. paucimobilis JCM 7515, CDC B3271, GIFU 2396, IAM 12577, ...
165545	S. paucimobilis JCM 7518, GIFU 2137
165546	S. paucimobilis JCM 7519, GIFU 11386
165548	S. paucimobilis JCM 7521, GIFU 11385
173383	S. paucimobilis CIMB142, CIMB 05-1135, CRBIP17.142

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
121633	negative	rod-shaped
125438	negative		93.639
125439	negative		95.8

Pigmentation

@ref	Production	Name
121633		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
548	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
36454	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
548	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
121633	CIP Medium 72	Medium recipe at CIP
121633	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
548	positive	growth	30
36454	positive	growth	30
67770	positive	growth	30
121633	positive	growth	25-37
121633	negative	growth	5
121633	negative	growth	10
121633	negative	growth	41
121633	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
121633	obligate aerobe
125439	obligate aerobe	98.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
121633	NaCl	positive	growth	0 %
121633	NaCl		growth	2 %
121633	NaCl		growth	4 %
121633	NaCl		growth	6 %
121633	NaCl		growth	8 %
121633	NaCl		growth	10 %

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
121633	16947 ChEBI	citrate	-	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
121633	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
121633	17632 ChEBI	nitrate	-	reduction
121633	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
121633	16301 ChEBI	nitrite	-	reduction
121633	15882 ChEBI	phenol	-	degradation
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121633	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
121633	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121633	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121633	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	+	3.2.1.23	from API zym
121633	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121633	caseinase	-	3.4.21.50
121633	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
121633	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121633	gelatinase	-
68369	gelatinase	-		from API 20NE
121633	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
121633	lipase	-
68382	lipase (C 14)	-		from API zym
121633	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121633	ornithine decarboxylase	-	4.1.1.17
121633	oxidase	+
121633	protease	-
68382	trypsin	-	3.4.21.4	from API zym
121633	tryptophan deaminase	-
121633	tween esterase	+
121633	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121633	-	+	+	+	-	+	+	-	-	+	+	+	-	+	-	+	+	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
548	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	+	-	-	+
548	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	+	-	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121633	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	-	+	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	+	+	+	-	+	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	+	+	+	-	-	+	+	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Medical device	-
#Infection	#Medical environment	#Clinic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
548	hospital respirator	London	United Kingdom	GBR	Europe
67770	Hospital respirator
121633	Human, Hospital respirator	London	United Kingdom	GBR	Europe	1969

Taxonmaps

69479

Global distribution of 16S sequence LC069038 (>99% sequence identity) for Sphingomonas paucimobilis from Microbeatlas

Aquatic Samples	244
Soil Samples	195
Animal Samples	345
Plant Samples	158
Total Samples	942

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
548	2	Risk group (German classification) According to TRBA 466
121633	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1602709v1 assembly for Sphingomonas paucimobilis FDAARGOS_908	complete	GCA_016027095	13689.29	8121651663	13689	97.78
67770	ASM73989v2 assembly for Sphingomonas paucimobilis NBRC 13935	contig	GCA_000739895	1219050.3	2600255072	1219050	61.92
67770	42650_F02 assembly for Sphingomonas paucimobilis NCTC11030	contig	GCA_900457515	13689.16	8116399615	13689	40.81

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Sphingomonas paucimobilis partial 16S rRNA gene, isolate OS-64.a	AM237364	1431	13689
20218	Sphingomonas paucimobilis 16S small subunit ribosomal RNA gene, partial sequence	U20776	1231	13689
20218	Sphingomonas paucimobilis strain ATCC 29837 16S ribosomal RNA (rrn) gene, partial sequence	U37337	1414	13689
548	Sphingomonas paucimobilis partial 16S rRNA gene, type strain DSM 1098T	LN681566	1441	13689
67770	Sphingomonas paucimobilis gene for 16S rRNA, partial sequence, strain: NBRC 13935	AB680526	1414	13689
67770	Sphingomonas paucimobilis gene for 16S rRNA, partial sequence	D16144	1446	13689
67770	Sphingomonas paucimobilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 7516	LC069038	1411	13689
67770	Sphingomonas paucimobilis JCM 7516 gene for 16S ribosomal RNA, partial sequence	LC504030	1411	13689
124043	Sphingomonas paucimobilis gene for 16S rRNA, partial sequence.	D13725	1418	13689
124043	Sphingomonas paucimobilis partial 16S rRNA gene	X72722	1462	13689

GC content

@ref	GC-content (mol%)	Method
548	65.0
548	65.5	thermal denaturation, midpoint method (Tm)
67770	63.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphingomonas paucimobilis strain FDAARGOS_908
PATRIC: 13689.29

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no
125439	gram_stain	BacteriaNetⓘ	negative	95.80	no
125439	motility	BacteriaNetⓘ	yes	57.60	no
125439	spore_formation	BacteriaNetⓘ	no	89.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingomonas paucimobilis strain FDAARGOS_908 strain Not applicable
PATRIC: 13689.29

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.64	no
125438	anaerobic	anaerobicⓘ	no	92.53	no
125438	spore-forming	spore-formingⓘ	no	88.41	no
125438	aerobic	aerobicⓘ	yes	88.29	yes
125438	thermophilic	thermophileⓘ	no	98.08	no
125438	flagellated	motile2+ⓘ	yes	68.28	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Dual-Temperature Microbiological Control of Cellular Products: A Potential Impact for Bacterial Screening of Platelet Concentrates?	Vollmer T, Knabbe C, Dreier J.	Microorganisms	10.3390/microorganisms11092350	2023
	Draft Genome Sequences of Sphingomonas mucosissima DSM 17494 and Sphingomonas dokdonensis DSM 21029.	Poehlein A, Wubbeler JH, Daniel R, Steinbuchel A.	Genome Announc	10.1128/genomea.00889-17	2017
Genetics	Presence of Bacterial Virulence Gene Homologues in the dibenzo-p-dioxins degrading bacterium Sphingomonas wittichii.	Saeb AT.	Bioinformation	10.6026/97320630012241	2016
Pathogenicity	Co-Cultivation of Fusarium, Alternaria, and Pseudomonas on Wheat-Ears Affects Microbial Growth and Mycotoxin Production.	Hoffmann A, Lischeid G, Koch M, Lentzsch P, Sommerfeld T, Muller MEH.	Microorganisms	10.3390/microorganisms9020443	2021
	Comparison of Mast Burkholderia Cepacia, Ashdown + Gentamicin, and Burkholderia Pseudomallei Selective Agar for the Selective Growth of Burkholderia Spp.	Edler C, Derschum H, Kohler M, Neubauer H, Frickmann H, Hagen RM.	Eur J Microbiol Immunol (Bp)	10.1556/1886.2016.00037	2017
Metabolism	Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains.	Basta T, Keck A, Klein J, Stolz A.	J Bacteriol	10.1128/jb.186.12.3862-3872.2004	2004
Metabolism	Reduction of azo dyes by redox mediators originating in the naphthalenesulfonic acid degradation pathway of Sphingomonas sp. strain BN6.	Keck A, Klein J, Kudlich M, Stolz A, Knackmuss HJ, Mattes R.	Appl Environ Microbiol	10.1128/aem.63.9.3684-3690.1997	1997
Phylogeny	Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry in comparison to 16S rRNA gene sequencing for species identification of nonfermenting bacteria.	Mellmann A, Cloud J, Maier T, Keckevoet U, Ramminger I, Iwen P, Dunn J, Hall G, Wilson D, Lasala P, Kostrzewa M, Harmsen D.	J Clin Microbiol	10.1128/jcm.00157-08	2008
Pathogenicity	Adipose Tissue-Resident Sphingomonas Paucimobilis Suppresses Adaptive Thermogenesis by Reducing 15-HETE Production and Inhibiting AMPK Pathway.	Zhu Y, Yang R, Deng Z, Deng B, Zhao K, Dai C, Wei G, Wang Y, Zheng J, Ren Z, Lv W, Xiao Y, Mei Z, Song T.	Adv Sci (Weinh)	10.1002/advs.202310236	2024
	Achieving pre-eminence of antimicrobial resistance among non-fermenting Gram-negative bacilli causing septicemia in intensive care units: A single center study of a tertiary care hospital.	Kumar H, Kaur N, Kumar N, Chauhan J, Bala R, Chauhan S.	Germs	10.18683/germs.2023.1374	2023
	Abnormal adipose tissue-derived microbes drive metabolic disorder and exacerbate postnatal growth retardation in piglet.	Song T, Qi M, Zhu Y, Wang N, Liu Z, Li N, Yang J, Han Y, Wang J, Tao S, Ren Z, Yin Y, Zheng J, Tan B.	Life Metab	10.1093/lifemeta/load052	2024
	Characterization of inositol lipid metabolism in gut-associated Bacteroidetes.	Heaver SL, Le HH, Tang P, Basle A, Mirretta Barone C, Vu DL, Waters JL, Marles-Wright J, Johnson EL, Campopiano DJ, Ley RE.	Nat Microbiol	10.1038/s41564-022-01152-6	2022
	Post-harvest cleaning, sanitization, and microbial monitoring of soilless nutrient delivery systems for sustainable space crop production.	Curry AB, Spern CJ, Khodadad CLM, Hummerick ME, Spencer LE, Torres J, Finn JR, Gooden JL, Monje O.	Front Plant Sci	10.3389/fpls.2024.1308150	2024
Enzymology	First report of Sphingomonas koreensis as a human pathogen in a patient with meningitis.	Marbjerg LH, Gaini S, Justesen US.	J Clin Microbiol	10.1128/jcm.03069-14	2015
Metabolism	Extracellular polysaccharides of Rhodococcus rhodochrous S-2 stimulate the degradation of aromatic components in crude oil by indigenous marine bacteria.	Iwabuchi N, Sunairi M, Urai M, Itoh C, Anzai H, Nakajima M, Harayama S.	Appl Environ Microbiol	10.1128/aem.68.5.2337-2343.2002	2002
Enzymology	Superiority of molecular techniques for identification of gram-negative, oxidase-positive rods, including morphologically nontypical Pseudomonas aeruginosa, from patients with cystic fibrosis.	Wellinghausen N, Kothe J, Wirths B, Sigge A, Poppert S.	J Clin Microbiol	10.1128/jcm.43.8.4070-4075.2005	2005
Phylogeny	Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the hanford site, washington state.	Fredrickson JK, Zachara JM, Balkwill DL, Kennedy D, Li SM, Kostandarithes HM, Daly MJ, Romine MF, Brockman FJ.	Appl Environ Microbiol	10.1128/aem.70.7.4230-4241.2004	2004
Metabolism	Homology between genes for aromatic hydrocarbon degradation in surface and deep-subsurface Sphingomonas strains.	Kim E, Aversano PJ, Romine MF, Schneider RP, Zylstra GJ.	Appl Environ Microbiol	10.1128/aem.62.4.1467-1470.1996	1996
Genetics	A new experimental approach for studying bacterial genomic island evolution identifies island genes with bacterial host-specific expression patterns.	Wilson JW, Nickerson CA.	BMC Evol Biol	10.1186/1471-2148-6-2	2006
Metabolism	Isolation and characterization of a fluoranthene-utilizing strain of Pseudomonas paucimobilis.	Mueller JG, Chapman PJ, Blattmann BO, Pritchard PH.	Appl Environ Microbiol	10.1128/aem.56.4.1079-1086.1990	1990
	Psychrotolerant bacteria isolated from arctic soil that degrade polychlorinated biphenyls at low temperatures	Master ER, Mohn WW.	Appl Environ Microbiol	10.1128/aem.64.12.4823-4829.1998	1998
Enzymology	Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria.	Davis KE, Joseph SJ, Janssen PH.	Appl Environ Microbiol	10.1128/aem.71.2.826-834.2005	2005
	Sphingomonas Paucimobilis-derived Extracellular Vesicles Reverse Abeta-induced Dysregulation of Neurotrophic Factors, Mitochondrial Function, and Inflammatory Factors through MeCP2-mediated Mechanism.	Lee EH, Kwon H, Park SY, Park JY, Hong JH, Paeng JW, Kim YK, Han PL.	Exp Neurobiol	10.5607/en25001	2025
Genetics	Genomic Characterization of Potential Plant Growth-Promoting Features of Sphingomonas Strains Isolated from the International Space Station.	Lombardino J, Bijlani S, Singh NK, Wood JM, Barker R, Gilroy S, Wang CCC, Venkateswaran K.	Microbiol Spectr	10.1128/spectrum.01994-21	2022
Enzymology	The cell envelope structure of the lipopolysaccharide-lacking gram-negative bacterium Sphingomonas paucimobilis.	Kawasaki S, Moriguchi R, Sekiya K, Nakai T, Ono E, Kume K, Kawahara K.	J Bacteriol	10.1128/jb.176.2.284-290.1994	1994
	Cellular fatty acid composition of Pseudomonas paucimobilis and groups IIk-2, Ve-1, and Ve-2.	Dees SB, Moss CW, Weaver RE, Hollis D.	J Clin Microbiol	10.1128/jcm.10.2.206-209.1979	1979
Metabolism	Specific detection of viable Legionella cells by combined use of photoactivated ethidium monoazide and PCR/real-time PCR.	Chang B, Sugiyama K, Taguri T, Amemura-Maekawa J, Kura F, Watanabe H.	Appl Environ Microbiol	10.1128/aem.00604-08	2009
Enzymology	Probiotic potential and safety properties of Lactobacillus plantarum from Slovak Bryndza cheese.	Belicova A, Mikulasova M, Dusinsky R.	Biomed Res Int	10.1155/2013/760298	2013
Phylogeny	Unveiling the microbial diversity across the northern Ninety East Ridge in the Indian Ocean.	Li D, Wang L, Jiang F, Zeng X, Xu Q, Zhang X, Zheng Q, Shao Z.	Front Microbiol	10.3389/fmicb.2024.1436735	2024
Genetics	Draft genome sequence of Sphingomonas paucimobilis strain LCT-SP1 isolated from the Shenzhou X spacecraft of China.	Pan L, Zhou H, Li J, Huang B, Guo J, Zhang XL, Gao LC, Xu C, Liu CT.	Stand Genomic Sci	10.1186/s40793-016-0136-z	2016
Metabolism	Genomewide characterisation of the genetic diversity of carotenogenesis in bacteria of the order Sphingomonadales.	Siddaramappa S, Viswanathan V, Thiyagarajan S, Narjala A.	Microb Genom	10.1099/mgen.0.000172	2018
	Comparison of Gut Microbiota Between Golden and Brown Noble Scallop Chlamys nobilis and Its Association With Carotenoids.	Liu H, Tan KS, Zhang X, Zhang H, Cheng D, Ting Y, Li S, Ma H, Zheng H.	Front Microbiol	10.3389/fmicb.2020.00036	2020
	Characterization of the Aerobic Anoxygenic Phototrophic Bacterium Sphingomonas sp. AAP5.	Kopejtka K, Zeng Y, Kaftan D, Selyanin V, Gardian Z, Tomasch J, Sommaruga R, Koblizek M	Microorganisms	10.3390/microorganisms9040768	2021
	Enantioselective Resolution of (R,S)-Carvedilol to (S)-(-)-Carvedilol by Biocatalysts.	Ettireddy S, Chandupatla V, Veeresham C	Nat Prod Bioprospect	10.1007/s13659-016-0118-2	2017
Enzymology	Complement activation by bacterial surface glycolipids: a study with planar bilayer membranes.	Munstermann M, Wiese A, Brandenburg K, Zahringer U, Brade L, Kawahara K, Seydel U	J Membr Biol	10.1007/s002329900486	1999
Metabolism	Molecular mechanisms of polymyxin B-membrane interactions: direct correlation between surface charge density and self-promoted transport.	Wiese A, Munstermann M, Gutsmann T, Lindner B, Kawahara K, Zahringer U, Seydel U	J Membr Biol	10.1007/s002329900350	1998
Phylogeny	Aromatic-degrading Sphingomonas isolates from the deep subsurface.	Fredrickson JK, Balkwill DL, Drake GR, Romine MF, Ringelberg DB, White DC	Appl Environ Microbiol	10.1128/aem.61.5.1917-1922.1995	1995
Phenotype	[Phenotype characteristics of 63 strains of Pseudomonas paucimobilis, mostly of hospital origin].	Richard C	Ann Biol Clin (Paris)		1986
Phylogeny	The similarities between Pseudomonas paucimobilis and allied bacteria derived from analysis of deoxyribonucleic acids and electrophoretic protein patterns.	Owen RJ, Jackman PJ	J Gen Microbiol	10.1099/00221287-128-12-2945	1982
Phylogeny	Isolation of an unusual 'lipid A' type glycolipid from Pseudomonas paucimobilis.	Kawahara K, Uchida K, Aida K	Biochim Biophys Acta	10.1016/0005-2760(82)90285-5	1982
Phylogeny	Sphingomonas aeria sp. nov. from indoor air of a pharmaceutical environment.	Park HK, Han JH, Kim TS, Joung Y, Cho SH, Kwon SW, Kim SB	Antonie Van Leeuwenhoek	10.1007/s10482-014-0302-5	2014
Phylogeny	Sphingomonas starnbergensis sp. nov., isolated from a prealpine freshwater lake.	Chen H, Jogler M, Tindall BJ, Klenk HP, Rohde M, Busse HJ, Overmann J	Int J Syst Evol Microbiol	10.1099/ijs.0.042887-0	2012
Phylogeny	Sphingomonas alpina sp. nov., a psychrophilic bacterium isolated from alpine soil.	Margesin R, Zhang DC, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.035964-0	2011
Phylogeny	Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov., and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov.	Pal R, Bala S, Dadhwal M, Kumar M, Dhingra G, Prakash O, Prabagaran SR, Shivaji S, Cullum J, Holliger C, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.63201-0	2005

References

#548	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1098
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36454	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121633	Collection of Institut Pasteur ; Curators of the CIP; CIP 100752
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingomonas paucimobilis (DSM 1098, ATCC 29837, NCPPB 3838)

Name and taxonomic classification

Morphology

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Physiology and metabolism

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