[Ref.: #548]
Sample type/isolated from
hospital respirator
[Ref.: #548]
Geographic location (country and/or sea, region)
London
[Ref.: #548]
Country
United Kingdom
[Ref.: #548]
Country ISO 3 Code
GBR
[Ref.: #548]
Continent
Europe
[Ref.: #67770]
Sample type/isolated from
Hospital respirator
* marker position based on {}
Isolation sources categories
#Infection
#Medical device
-
#Infection
#Medical environment
#Clinic
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
16S Sequence information:
Only first 5 entries are displayed. Click here to see all. Click here to see only first 5 entries.
Sequence accession description
Seq. accession number
Sequence length (bp)
Sequence database
Associated NCBI tax ID
[Ref.: #20218]
Sphingomonas paucimobilis partial 16S rRNA gene, isolate OS-64.a
AM237364
1431
13689 tax ID
*
[Ref.: #20218]
Sphingomonas paucimobilis 16S small subunit ribosomal RNA gene, partial sequence
U20776
1231
13689 tax ID
*
[Ref.: #20218]
Sphingomonas paucimobilis strain ATCC 29837 16S ribosomal RNA (rrn) gene, partial sequence
U37337
1414
13689 tax ID
*
[Ref.: #548]
Sphingomonas paucimobilis partial 16S rRNA gene, type strain DSM 1098T
LN681566
1441
13689 tax ID
[Ref.: #67770]
Sphingomonas paucimobilis gene for 16S rRNA, partial sequence, strain: NBRC 13935
AB680526
1414
13689 tax ID
[Ref.: #67770]
Sphingomonas paucimobilis gene for 16S rRNA, partial sequence
D16144
1446
13689 tax ID
[Ref.: #67770]
Sphingomonas paucimobilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 7516
LC069038
1411
13689 tax ID
[Ref.: #67770]
Sphingomonas paucimobilis JCM 7516 gene for 16S ribosomal RNA, partial sequence
LC504030
1411
13689 tax ID
[Ref.: #548]
GC-content
65.0 mol%
[Ref.: #548]
GC-content
65.5 mol%
thermal denaturation, midpoint method (Tm)
[Ref.: #67770]
GC-content
63.7 mol%
high performance liquid chromatography (HPLC)
Availability in culture collections External links
[Ref.: #548]
Culture collection no.
DSM 1098 , ATCC 29837 , NCPPB 3838 , NCTC 11030 , JCM 7516 , CCM 3293 , CCUG 31192 , CCUG 6518 , CDC CL 1/70, CECT 599 , CIP 100752 , GIFU 2395, IAM 12576, ICPB 4235, IFO 13935 , LMG 1227 , NBRC 13935 , PCM 2585
[Ref.: #20218]
Associated Passport(s) in StrainInfo
21701 , 21694 , 157162 , 21708
Literature:
Only first 10 entries are displayed. Click here to see all. Click here to see only first 10 entries.
Topic
Title
Authors
Journal
DOI
Year
Phenotype
[Phenotype characteristics of 63 strains of Pseudomonas paucimobilis, mostly of hospital origin].
Richard C
Ann Biol Clin (Paris)
1986
*
Phylogeny
Isolation of an unusual 'lipid A' type glycolipid from Pseudomonas paucimobilis.
Kawahara K, Uchida K, Aida K
Biochim Biophys Acta
10.1016/0005-2760(82)90285-5
1982
*
Phylogeny
The similarities between Pseudomonas paucimobilis and allied bacteria derived from analysis of deoxyribonucleic acids and electrophoretic protein patterns.
Owen RJ, Jackman PJ
J Gen Microbiol
10.1099/00221287-128-12-2945
1982
*
Phylogeny
Aromatic-degrading Sphingomonas isolates from the deep subsurface.
Fredrickson JK, Balkwill DL, Drake GR, Romine MF, Ringelberg DB, White DC
Appl Environ Microbiol
10.1128/aem.61.5.1917-1922.1995
1995
*
Metabolism
Molecular mechanisms of polymyxin B-membrane interactions: direct correlation between surface charge density and self-promoted transport.
Wiese A, Munstermann M, Gutsmann T, Lindner B, Kawahara K, Zahringer U, Seydel U
J Membr Biol
10.1007/s002329900350
1998
*
Enzymology
Complement activation by bacterial surface glycolipids: a study with planar bilayer membranes.
Munstermann M, Wiese A, Brandenburg K, Zahringer U, Brade L, Kawahara K, Seydel U
J Membr Biol
10.1007/s002329900486
1999
*
Phylogeny
Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov., and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov.
Pal R, Bala S, Dadhwal M, Kumar M, Dhingra G, Prakash O, Prabagaran SR, Shivaji S, Cullum J, Holliger C, Lal R
Int J Syst Evol Microbiol
10.1099/ijs.0.63201-0
2005
*
Phylogeny
Sphingomonas alpina sp. nov., a psychrophilic bacterium isolated from alpine soil.
Margesin R, Zhang DC, Busse HJ
Int J Syst Evol Microbiol
10.1099/ijs.0.035964-0
2011
*
Phylogeny
Sphingomonas starnbergensis sp. nov., isolated from a prealpine freshwater lake.
Chen H, Jogler M, Tindall BJ, Klenk HP, Rohde M, Busse HJ, Overmann J
Int J Syst Evol Microbiol
10.1099/ijs.0.042887-0
2012
*
Phylogeny
Sphingomonas aeria sp. nov. from indoor air of a pharmaceutical environment.
Park HK, Han JH, Kim TS, Joung Y, Cho SH, Kwon SW, Kim SB
Antonie Van Leeuwenhoek
10.1007/s10482-014-0302-5
2014
*
Enantioselective Resolution of (R,S)-Carvedilol to (S)-(-)-Carvedilol by Biocatalysts.
Ettireddy S, Chandupatla V, Veeresham C
Nat Prod Bioprospect
10.1007/s13659-016-0118-2
2017
*
Characterization of the Aerobic Anoxygenic Phototrophic Bacterium Sphingomonas sp. AAP5.
Kopejtka K, Zeng Y, Kaftan D, Selyanin V, Gardian Z, Tomasch J, Sommaruga R, Koblizek M
Microorganisms
10.3390/microorganisms9040768
2021
*
References
#548
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 1098
#36454
; Curators of the CIP;
#67770
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369
Automatically annotated from API 20NE .
#69479
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
* These data were automatically processed and therefore are not curated
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