Name: Sphingobium lactosutens DS20
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14192

Type strain:

Species: Sphingobium lactosutens

Strain Designation: DS20

Culture col. no.: DSM 23389, CCM 7540, MTCC 9471

Strain history: <- CCM <- R. Lal, Univ. Delhi, Dept. Zoology, India; DS20

NCBI tax ID(s): 522773 (species)

Section

Sphingobium lactosutens DS20 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from HCH dump site.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingobium*
	Species	**Sphingobium lactosutens**
	Full Scientific Name (LPSN)	Sphingobium lactosutens Kumari et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29043]	Gram stain	negative

[Ref.: #29043]	Cell length	2.6 µm

[Ref.: #29043]	Cell width	1.3 µm

[Ref.: #29043]	Cell shape	rod-shaped

[Ref.: #29043]	Motility	no

[Ref.: #29043]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29043]			growth	20-37 °C
[Ref.: #29043]			optimum	28 °C

[Ref.: #29043]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #29043]			optimum	7
[Ref.: #29043]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29043]

Oxygen tolerance

aerobe

[Ref.: #29043]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29043]		NaCl		growth	0-5	%
[Ref.: #29043]		NaCl		optimum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29043]	arabinose ChEBI	+	carbon source
[Ref.: #29043]	cellobiose ChEBI	+	carbon source
[Ref.: #29043]	esculin ChEBI	+	hydrolysis
[Ref.: #29043]	galactose ChEBI	+	carbon source
[Ref.: #29043]	glucose ChEBI	+	carbon source
[Ref.: #29043]	lactose ChEBI	+	carbon source
[Ref.: #29043]	maltose ChEBI	+	carbon source
[Ref.: #29043]	nitrate ChEBI	+	reduction
[Ref.: #29043]	trehalose ChEBI	+	carbon source
[Ref.: #29043]	xylose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16825]	Sample type/isolated from	HCH dump site
[Ref.: #16825]	Geographic location (country and/or sea, region)	Ummari village at Lucknow
[Ref.: #16825]	Country	India
[Ref.: #16825]	Country ISO 3 Code	IND
[Ref.: #16825]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Landfill
#Engineered	#Waste	#Solid waste

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU675846 (>99% sequence identity) for Sphingobium lactosutens from Microbeatlas

Aquatic Samples	20
Soil Samples	2
Animal Samples	2
Plant Samples	11
Total Samples	35

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16825]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16825]	Sphingobium sp. DS20 16S ribosomal RNA gene, partial sequence	EU675846	1334	ENA	1331060 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingobium lactosutens DS20	GCA_000445105	contig	GenBank	1331060 tax ID	*
[Ref.: #66792]	Sphingobium lactosutens DS20	1331060.3	wgs	PATRIC	1331060 tax ID	*
[Ref.: #66792]	Sphingobium lactosutens DS20	2582580885	draft	JGI IMG/M	1331060 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingobium lactosutens DS20 PATRIC: 1331060.3
[Ref.: #69480]	motile	no	54.291	yes
[Ref.: #69480]	gram-positive	no	97.238	yes
[Ref.: #69480]	anaerobic	no	98.882	yes
[Ref.: #69480]	halophile	no	92.896	no
[Ref.: #69480]	spore-forming	no	94.148	yes
[Ref.: #69480]	glucose-util	yes	87.068	yes
[Ref.: #69480]	aerobic	yes	94.921	no
[Ref.: #69480]	flagellated	no	87.159	yes
[Ref.: #69480]	thermophile	no	97.512	no
[Ref.: #69480]	glucose-ferment	no	93.161	no

Availability in culture collections External links

[Ref.: #16825]

Culture collection no.

DSM 23389, CCM 7540, MTCC 9471

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobium aquiterrae sp. nov., a toluene, meta- and para-xylene-degrading bacterium isolated from petroleum hydrocarbon-contaminated groundwater.	Revesz F, Toth EM, Kriszt B, Boka K, Benedek T, Sarkany O, Nagy Z, Tancsics A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002898	2018	*
Phylogeny	Sphingobium lactosutens sp. nov., isolated from a hexachlorocyclohexane dump site and Sphingobium abikonense sp. nov., isolated from oil-contaminated soil.	Kumari H, Gupta SK, Jindal S, Katoch P, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.004739-0	2009	*

References

#16825

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23389

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29043

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25473 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#25473

IJSEM 2291 2009 ( DOI 10.1099/ijs.0.004739-0 , PubMed 19620380 )

* These data were automatically processed and therefore are not curated

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