[Ref.: #2023] |
Sample type/isolated from |
deteriorated canned food |
|
[Ref.: #67772] |
Sample type/isolated from |
Deteriorated canned food |
[Ref.: #67772] |
Sampling date |
1990 |
|
[Ref.: #123299] |
Sample type/isolated from |
Food, Canned food |
* marker position based on {}
|
|
Isolation sources categories |
#Engineered |
#Biodegradation |
#Composting |
#Engineered |
#Food production |
#Bottled, canned, packed food |
|
|
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Geobacillus stearothermophilus gene for 16S ribosomal RNA, partial sequence, strain: JCM 2501 |
LC177207 |
1481 |
|
1422 tax ID |
[Ref.: #2023] |
Geobacillus stearothermophilus partial 16S rRNA gene, strain R-35646 |
FN428694 |
1511 |
|
1422 tax ID |
[Ref.: #67770] |
B.stearothermophilus 16S ribosomal RNA |
X60640 |
1434 |
|
1422 tax ID |
[Ref.: #20218] |
Bacillus stearothermophilus 16S rRNA gene, strain DSM 22T |
AJ294817 |
1505 |
|
1422 tax ID |
* |
[Ref.: #20218] |
Geobacillus stearothermophilus strain DSM 22 16S-23S ribosomal RNA intergenic spacer and tRNA-Ile gene, partial sequence; and tRNA-Ala gene, complete sequence |
EU157949 |
284 |
|
1422 tax ID |
* |
[Ref.: #20218] |
Geobacillus stearothermophilus strain BGSC 9A20 16S ribosomal RNA gene, complete sequence |
AY608928 |
1562 |
|
1422 tax ID |
* |
[Ref.: #20218] |
Geobacillus stearothermophilus gene for 16S rRNA, partial sequence |
AB271757 |
1485 |
|
1422 tax ID |
* |
[Ref.: #20218] |
Geobacillus stearothermophilus clone EM-2_F 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
AF478064 |
628 |
|
1366047 tax ID |
* |
[Ref.: #20218] |
Geobacillus stearothermophilus isolate Gst2 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
EU723631 |
628 |
|
1422 tax ID |
* |
[Ref.: #20218] |
Geobacillus stearothermophilus isolate Gst6 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
EU723632 |
628 |
|
1422 tax ID |
* |
[Ref.: #20218] |
Geobacillus stearothermophilus isolate Gst39 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
EU723633 |
502 |
|
1422 tax ID |
* |
|
|
Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Geobacillus stearothermophilus ATCC 12980 |
GCA_001277805 |
scaffold |
|
1366047 tax ID |
[Ref.: #66792] |
Geobacillus stearothermophilus ATCC 12980 |
1366047.4 |
wgs |
|
1366047 tax ID |
* |
[Ref.: #66792] |
Geobacillus stearothermophilus ATCC 12980 |
2654587565 |
draft |
|
1366047 tax ID |
* |
|
[Ref.: #2023] |
GC-content |
52.8 mol% |
high performance liquid chromatography (HPLC) |
[Ref.: #2023] |
GC-content |
51.9 mol% |
thermal denaturation, midpoint method (Tm) |
[Ref.: #2023] |
GC-content |
51.5 mol% |
Buoyant density centrifugation (BD) |
[Ref.: #67770] |
GC-content |
51.6 mol% |
thermal denaturation, midpoint method (Tm) |
|
-
Availability in culture collections External links
[Ref.: #2023] |
Culture collection no. |
DSM 22, ATCC 12980, CCM 2062, CCUG 26241, IAM 11062, LMG 6939, NBRC 12550, NCIMB 8923, NCTC 10339, VKM B-2231, IFO 12550, NCA 26, JCM 2501, BCRC 11092, CIP 66.23, KCTC 1665, KCTC 1752, NCFB 1768, NRRL B-1172, VKM B-510, VTT E-81128, UCCCB118, NCDO 1768 |
[Ref.: #71070] |
SI-ID 1198
|
* |
|
Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Pathogenicity |
Performance evaluation of bactericidal effect and endotoxin inactivation by low-temperature ozone/hydrogen peroxide mixed gas exposure. |
Nomura Y, Yamamura J, Fukui C, Fujimaki H, Sakamoto K, Matsuo KI, Kuromatsu H, Kikuchi Y, Haishima Y |
J Biomed Mater Res B Appl Biomater |
10.1002/jbm.b.34840 |
2021 |
* |
Enzymology |
Simultaneous production of alpha and beta amylase enzymes using separate gene bearing recombinant vectors in the same Escherichia coli cells. |
Ozcan D, SIpahIoGlu HM |
Turk J Biol |
10.3906/biy-2001-71 |
2020 |
* |
Cultivation |
The search for a microbiological inhibition method for the rapid, broad-spectrum and high-throughput screening of six kinds of antibiotic residues in swine urine. |
Wu Q, Zhu Q, Shabbir MAB, Sattar A, Peng D, Tao Y, Chen D, Yuan Z, Wang Y |
Food Chem |
10.1016/j.foodchem.2020.127580 |
2020 |
* |
Pathogenicity |
A microbiological inhibition method for the rapid, broad-spectrum, and high-throughput screening of 34 antibiotic residues in milk. |
Wu Q, Zhu Q, Liu Y, Shabbir MAB, Sattar A, Peng D, Tao Y, Chen D, Wang Y, Yuan Z |
J Dairy Sci |
10.3168/jds.2019-16480 |
2019 |
* |
Stress |
The effect of phosphate on the heat resistance of spores of dairy isolates of Geobacillus stearothermophilus. |
Kumar M, Flint SH, Palmer J, Plieger PG, Waterland M |
Int J Food Microbiol |
10.1016/j.ijfoodmicro.2019.108334 |
2019 |
* |
Enzymology |
Heat resistance of spores of 18 strains of Geobacillus stearothermophilus and impact of culturing conditions. |
Wells-Bennik MHJ, Janssen PWM, Klaus V, Yang C, Zwietering MH, Den Besten HMW |
Int J Food Microbiol |
10.1016/j.ijfoodmicro.2018.11.005 |
2018 |
* |
Stress |
Walking dead: Permeabilization of heat-treated Geobacillus stearothermophilus ATCC 12980 spores under growth-preventing conditions. |
Mtimet N, Trunet C, Mathot AG, Venaille L, Leguerinel I, Coroller L, Couvert O |
Food Microbiol |
10.1016/j.fm.2016.12.013 |
2016 |
* |
Biotechnology |
Die another day: Fate of heat-treated Geobacillus stearothermophilus ATCC 12980 spores during storage under growth-preventing conditions. |
Mtimet N, Trunet C, Mathot AG, Venaille L, Leguerinel I, Coroller L, Couvert O |
Food Microbiol |
10.1016/j.fm.2015.12.007 |
2015 |
* |
Stress |
Modeling the behavior of Geobacillus stearothermophilus ATCC 12980 throughout its life cycle as vegetative cells or spores using growth boundaries. |
Mtimet N, Trunet C, Mathot AG, Venaille L, Leguerinel I, Coroller L, Couvert O |
Food Microbiol |
10.1016/j.fm.2014.10.013 |
2014 |
* |
Metabolism |
Crystallization of domains involved in self-assembly of the S-layer protein SbsC. |
Ethordic A, Egelseer EM, Tesarz M, Sleytr UB, Keller W, Pavkov-Keller T |
Acta Crystallogr Sect F Struct Biol Cryst Commun |
10.1107/S1744309112042650 |
2012 |
* |
Metabolism |
The high-molecular-mass amylase (HMMA) of Geobacillus stearothermophilus ATCC 12980 interacts with the cell wall components by virtue of three specific binding regions. |
Ferner-Ortner-Bleckmann J, Huber-Gries C, Pavkov T, Keller W, Mader C, Ilk N, Sleytr UB, Egelseer EM |
Mol Microbiol |
10.1111/j.1365-2958.2009.06734.x |
2009 |
* |
Enzymology |
Menaquinone reduction by an HMT2-like sulfide dehydrogenase from Bacillus stearothermophilus. |
Shibata H, Suzuki K, Kobayashi S |
Can J Microbiol |
10.1139/W07-077 |
2007 |
* |
Pathogenicity |
A novel approach to specific allergy treatment: the recombinant allergen-S-layer fusion protein rSbsC-Bet v 1 matures dendritic cells that prime Th0/Th1 and IL-10-producing regulatory T cells. |
Gerstmayr M, Ilk N, Schabussova I, Jahn-Schmid B, Egelseer EM, Sleytr UB, Ebner C, Bohle B |
J Immunol |
10.4049/jimmunol.179.11.7270 |
2007 |
* |
Metabolism |
High-affinity interaction between the S-layer protein SbsC and the secondary cell wall polymer of Geobacillus stearothermophilus ATCC 12980 determined by surface plasmon resonance technology. |
Ferner-Ortner J, Mader C, Ilk N, Sleytr UB, Egelseer EM |
J Bacteriol |
10.1128/JB.00294-07 |
2007 |
* |
Metabolism |
Screening of catalytically active microorganisms for the synthesis of 6-modified purine nucleosides. |
Trelles JA, Valino AL, Runza V, Lewkowicz ES, Iribarren AM |
Biotechnol Lett |
10.1007/s10529-005-5628-7 |
2005 |
* |
Stress |
A method of increasing test range and accuracy of bioindicators: Geobacillus stearothermophilus spores. |
Lundahl G |
PDA J Pharm Sci Technol |
|
2003 |
* |
Phylogeny |
Genetic polymorphism by RAPD-PCR and phenotypic characteristics of isolated thermotolerant Bacillus strains from hot spring sources. |
Hazem A, Manar A |
New Microbiol |
|
2003 |
* |
Biotechnology |
A RAPD-based comparison of thermophilic bacilli from milk powders. |
Ronimus RS, Parker LE, Turner N, Poudel S, Ruckert A, Morgan HW |
Int J Food Microbiol |
10.1016/s0168-1605(02)00480-4 |
2003 |
* |
Enzymology |
The purification and characterization of a Bacillus stearothermophilus methionine aminopeptidase (MetAP). |
Chung JM, Chung IY, Lee YS |
J Biochem Mol Biol |
10.5483/bmbrep.2002.35.2.228 |
2002 |
* |
Metabolism |
Characterization of an S-layer glycoprotein produced in the course of S-layer variation of Bacillus stearothermophilus ATCC 12980 and sequencing and cloning of the sbsD gene encoding the protein moiety. |
Egelseer EM, Danhorn T, Pleschberger M, Hotzy C, Sleytr UB, Sara M |
Arch Microbiol |
10.1007/s00203-001-0363-5 |
2001 |
* |
Metabolism |
Analysis of the structure-function relationship of the S-layer protein SbsC of Bacillus stearothermophilus ATCC 12980 by producing truncated forms. |
Jarosch M, Egelseer EM, Huber C, Moll D, Mattanovich D, Sleytr UB, Sara M |
Microbiology (Reading) |
10.1099/00221287-147-5-1353 |
2001 |
* |
Metabolism |
ISBst12, a novel type of insertion-sequence element causing loss of S-layer-gene expression in Bacillus stearothermophilus ATCC 12980. |
Egelseer EM, Idris R, Jarosch M, Danhorn T, Sleytr UB, Sara M |
Microbiology (Reading) |
10.1099/00221287-146-9-2175 |
2000 |
* |
Phylogeny |
Bacillus thermodenitrificans sp. nov., nom. rev. |
Manachini PL, Mora D, Nicastro G, Parini C, Stackebrandt E, Pukall R, Fortina MG |
Int J Syst Evol Microbiol |
10.1099/00207713-50-3-1331 |
2000 |
* |
Metabolism |
S-layer gene sbsC of Bacillus stearothermophilus ATCC 12980: molecular characterization and heterologous expression in Escherichia coli. |
Jarosch M, Egelseer EM, Mattanovich D, Sleytr UB, Sara M |
Microbiology (Reading) |
10.1099/00221287-146-2-273 |
2000 |
* |
Stress |
Predictive model to describe the combined effect of pH and NaCl on apparent heat resistance of Bacillus stearothermophilus. |
Periago PM, Fernandez PS, Salmeron MC, Martinez A |
Int J Food Microbiol |
10.1016/s0168-1605(98)00111-1 |
1998 |
* |
Metabolism |
The S-layer proteins of two Bacillus stearothermophilus wild-type strains are bound via their N-terminal region to a secondary cell wall polymer of identical chemical composition. |
Egelseer EM, Leitner K, Jarosch M, Hotzy C, Zayni S, Sleytr UB, Sara M |
J Bacteriol |
10.1128/JB.180.6.1488-1495.1998 |
1998 |
* |
Enzymology |
A novel levansucrase-levanase gene cluster in Bacillus stearothermophilus ATCC12980. |
Li Y, Triccas JA, Ferenci T |
Biochim Biophys Acta |
10.1016/s0167-4781(97)00103-6 |
1997 |
* |
Metabolism |
Evidence that an N-terminal S-layer protein fragment triggers the release of a cell-associated high-molecular-weight amylase in Bacillus stearothermophilus ATCC 12980. |
Egelseer EM, Schocher I, Sleytr UB, Sara M |
J Bacteriol |
10.1128/jb.178.19.5602-5609.1996 |
1996 |
* |
Pathogenicity |
Effect of rubber stopper composition, preservative pretreatment and rinse water temperature on the moist heat resistance of Bacillus stearothermophilus ATCC 12980. |
Rubio SL, Moldenhauer JE |
PDA J Pharm Sci Technol |
|
1995 |
* |
Stress |
Recovery of Heat-stressed Spores of Bacillus stearothermophilus on Solid Media Containing Calcium- and Magnesium-deficient Agar. |
Sikes A, Whitfield S, Rosano DJ |
J Food Prot |
10.4315/0362-028X-56.8.706 |
1993 |
* |
Enzymology |
Construction of an Escherichia coli export-affinity vector for expression and purification of foreign proteins by fusion to cyclomaltodextrin glucanotransferase. |
Hellman J, Mantsala P |
J Biotechnol |
10.1016/0168-1656(92)90097-s |
1992 |
* |
Enzymology |
Localized insertion of new S-layer during growth of Bacillus stearothermophilus strains. |
Gruber K, Sleytr UB |
Arch Microbiol |
10.1007/BF00446749 |
1988 |
* |
Cultivation |
Thermal inactivation and injury of Bacillus stearothermophilus spores. |
Feeherry FE, Munsey DT, Rowley DB |
Appl Environ Microbiol |
10.1128/aem.53.2.365-370.1987 |
1987 |
* |
Biotechnology |
Production of PR Toxin and Roquefortine by Penicillium roqueforti Isolates from Cabrales Blue Cheese. |
Medina M, Gaya P, Nunez M |
J Food Prot |
10.4315/0362-028X-48.2.118 |
1985 |
* |
Pathogenicity |
Rapid assay for tetracycline in premixes and mixed feeds. |
Katz JM, Katz SE |
J Assoc Off Anal Chem |
|
1984 |
* |
Enzymology |
Transformation of Bacillus stearothermophilus with plasmid DNA and characterization of shuttle vector plasmids between Bacillus stearothermophilus and Bacillus subtilis. |
Imanaka T, Fujii M, Aramori I, Aiba S |
J Bacteriol |
10.1128/jb.149.3.824-830.1982 |
1982 |
* |
Pathogenicity |
Rapid quantitative microbiological assay of antibiotics and chemical preservatives of a nonantibiotic nature. |
Kabay A |
Appl Microbiol |
10.1128/am.22.5.752-755.1971 |
1971 |
* |
Enzymology |
Molecular cloning and characterization of two thermostable carboxyl esterases from Geobacillus stearothermophilus. |
Ewis HE, Abdelal AT, Lu CD |
Gene |
10.1016/j.gene.2003.12.029 |
2004 |
* |
|
Influence of the incubation temperature and total dissolved solids concentration on the biofilm and spore formation of dairy isolates of Geobacillus stearothermophilus. |
Kumar M, Flint S, Palmer J, Chanapha S, Hall C |
Appl Environ Microbiol |
10.1128/AEM.02311-20 |
2021 |
* |
|
Small-angle X-ray scattering for imaging of surface layers on intact bacteria in the native environment. |
Sekot G, Schuster D, Messner P, Pum D, Peterlik H, Schaffer C |
J Bacteriol |
10.1128/JB.02164-12 |
2013 |
* |
|
Towards the structure of the C-terminal part of the S-layer protein SbsC. |
Kroutil M, Pavkov T, Birner-Gruenberger R, Tesarz M, Sleytr UB, Egelseer EM, Keller W |
Acta Crystallogr Sect F Struct Biol Cryst Commun |
10.1107/S1744309109035386 |
2009 |
* |
|
A recombinant bacterial cell surface (S-layer)-major birch pollen allergen-fusion protein (rSbsC/Bet v1) maintains the ability to self-assemble into regularly structured monomolecular lattices and the functionality of the allergen. |
Breitwieser A, Egelseer EM, Moll D, Ilk N, Hotzy C, Bohle B, Ebner C, Sleytr UB, Sara M |
Protein Eng |
10.1093/protein/15.3.243 |
2002 |
* |
|
Thermal Resistance of Bacillus stearothermophilus Heated at High Temperatures in Different Substrates. |
Rodrigo F, Fernandez PS, Rodrigo M, Ocio MJ, Martinez A |
J Food Prot |
10.4315/0362-028X-60.2.144 |
1997 |
* |
|
D Values of Bacillus stearothermophilus Spores as a Function of pH and Recovery Medium Acidulant. |
Fernandez PS, Gomez FJ, Ocio MJ, Rodrigo M, Sanchez T, Martinez A |
J Food Prot |
10.4315/0362-028X-58.6.628 |
1995 |
* |
|
- References
-
#2023 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 22
|
-
-
-
-
#23042 |
An Coorevits,Anna E. Dinsdale,Gillian Halket,Liesbeth Lebbe,Paul De Vos,Anita Van Landschoot,Niall A. Logan:
Taxonomic revision of the genus Geobacillus : emendation of Geobacillus , G. stearothermophilus , G. jurassicus , G. toebii , G. thermodenitrificans and G. thermoglucosidans (nom. corrig., formerly 'thermoglucosidasius'); transfer of Bacillus thermantarcticus to the genus as G. thermantarcticus comb. nov.; proposal of Caldibacillus debilis gen. nov., comb. nov.; transfer of G. tepidamans to Anoxybacillus as A. tepidamans comb. nov.; and proposal of Anoxybacillus caldiproteolyticus sp. nov..
IJSEM 62:
1470 - 1485
2012 (
DOI 10.1099/ijs.0.030346-0 , PubMed 21856988 )
|
-
#36276 |
; Curators of the CIP;
|
-
#48397 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 26241
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#67772 |
The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
|
-
#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
#71070 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID1198.1 )
|
-
#123299 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 66.23
|
- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
|
|