Name: Sphingobium rhizovicinum CC-FH12-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14189

Type strain:

Species: Sphingobium rhizovicinum

Strain Designation: CC-FH12-1

Culture col. no.: DSM 19845, BCRC 17770, CCM 7491

Strain history: <- P. Kämpfer, Univ. Giessen; CC-FH12-1

NCBI tax ID(s): 432308 (species)

SI-ID 396904

DSM 19845

Section

Sphingobium rhizovicinum CC-FH12-1 is a mesophilic bacterium that was isolated from rhizosphere soil of Fortunella hindsii Swingle.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingobium*
	Species	**Sphingobium rhizovicinum**
	Full Scientific Name (LPSN)	Sphingobium rhizovicinum Young et al. 2008

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8285]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #8285]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #8285]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8285]			growth	28 °C

[Ref.: #8285]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #8285]	23398	+	-	-	-	-	+	-	+	+	+	+	-	-	+	+	+	-	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8285]	Sample type/isolated from	rhizosphere soil of Fortunella hindsii (Champ. ex Benth.) Swingle
[Ref.: #8285]	Host species	Fortunella hindsii
[Ref.: #8285]	Country	Taiwan
[Ref.: #8285]	Country ISO 3 Code	TWN
[Ref.: #8285]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8285]	Sphingobium rhizovicinum strain CC-FH12-1 16S ribosomal RNA gene, partial sequence	EF465534	1450	ENA	432308 tax ID

Availability in culture collections External links

[Ref.: #8285]

Culture collection no.

DSM 19845, BCRC 17770, CCM 7491

[Ref.: #83352]

SI-ID 396904

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobium naphthae sp. nov., with the ability to degrade aliphatic hydrocarbons, isolated from oil-contaminated soil.	Chaudhary DK, Jeong SW, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002064	2017	*
Phylogeny	Sphingobium czechense sp. nov., isolated from a hexachlorocyclohexane dump site.	Niharika N, Moskalikova H, Kaur J, Khan F, Sedlackova M, Hampl A, Damborsky J, Prokop Z, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.039396-0	2012	*
Phylogeny	Sphingobium cupriresistens sp. nov., a copper-resistant bacterium isolated from copper mine soil, and emended description of the genus Sphingobium.	Li L, Liu H, Shi Z, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.040865-0	2012	*
Phylogeny	Sphingobium lactosutens sp. nov., isolated from a hexachlorocyclohexane dump site and Sphingobium abikonense sp. nov., isolated from oil-contaminated soil.	Kumari H, Gupta SK, Jindal S, Katoch P, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.004739-0	2009	*
Phylogeny	Sphingobium rhizovicinum sp. nov., isolated from rhizosphere soil of Fortunella hindsii (Champ. ex Benth.) Swingle.	Young CC, Arun AB, Kampfer P, Busse HJ, Lai WA, Chen WM, Shen FT, Rekha PD	Int J Syst Evol Microbiol	10.1099/ijs.0.65564-0	2008	*

References

#8285

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19845

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#68369

Automatically annotated from API 20NE .

#83352

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396904.1 )

* These data were automatically processed and therefore are not curated

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