Name: Staphylococcus saprophyticus CCUG 4318
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141646

Type strain:

Species: Staphylococcus saprophyticus

Culture col. no.: CCUG 4318, NCTC 963

NCBI tax ID(s): 29385 (species)

SI-ID 57271

CCUG 4318, NCTC 963

Other strains from Staphylococcus saprophyticus

Section

Staphylococcus saprophyticus CCUG 4318 is a Gram-positive bacterium that was isolated from Ropy milk.

Gram-positive
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus saprophyticus**
	Full Scientific Name (LPSN)	Staphylococcus saprophyticus (Fairbrother 1940) Shaw et al. 1951 (Approved Lists 1980)

	Synonym	Staphylococcus saprophyticus subsp. bovis
	Synonym	"Staphylococcus* saprophyticus"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.921

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44736]

Fatty acid	Percentage	ECL
C14:0 ISO	32	13.618
C16:1 ω11c	18.3	15.757
C18:1 ω9c	13.1	17.769
C14:0	8.9	14
C16:1 ω7c alcohol	6.3	15.386
C17:0 10-methyl	4.3	17.41
C16:0	2.7	16
Unidentified	2.5	13.771
C16:0 iso	1.9	15.626
C15:0 ANTEISO	1.8	14.711
C16:0 N alcohol	1.8	15.549
C18:3 ω6,9,12c	1.4	17.577
C18:2 ω6,9c/C18:0 ANTE	1.4	17.724
Unidentified	1	19.612
C14:0 2OH	0.9	15.205
C17:1 ω9c	0.8	16.773
C18:1 2OH	0.6	19.088
C18:0	0.4	18

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44736]	Sample type/isolated from	Ropy milk
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Dairy product
#Environmental	#Microbial community	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Macrococcus caseolyticus NCTC963	GCA_900453015	contig	GenBank	69966 tax ID	*
[Ref.: #66792]	Micrococcus lylae strain NCTC963	1273.5	wgs	PATRIC	1273 tax ID	*
[Ref.: #66792]	Micrococcus lylae NCTC 963	2808606674	draft	JGI IMG/M	1273 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micrococcus lylae strain NCTC963 PATRIC: 1273.5
[Ref.: #69481]	spore-forming	yes	79	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micrococcus lylae strain NCTC963 PATRIC: 1273.5
[Ref.: #69480]	motile	no	89.22	no
[Ref.: #69480]	gram-positive	yes	93.588	no
[Ref.: #69480]	anaerobic	no	98.016	no
[Ref.: #69480]	aerobic	yes	89.867	no
[Ref.: #69480]	halophile	yes	85.417	no
[Ref.: #69480]	spore-forming	no	84.753	no
[Ref.: #69480]	glucose-util	yes	87.056	no
[Ref.: #69480]	flagellated	no	91.356	no
[Ref.: #69480]	thermophile	no	99.736	no
[Ref.: #69480]	glucose-ferment	no	62.533	no

Availability in culture collections External links

[Ref.: #44736]

Culture collection no.

CCUG 4318, NCTC 963

[Ref.: #97281]

SI-ID 57271

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44736 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 4318

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#97281

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID57271.1 )

* These data were automatically processed and therefore are not curated

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Micrococcus lylae strain NCTC963

Micrococcus lylae strain NCTC963

Change proposal

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