Staphylococcus saprophyticus CCUG 4318 is a prokaryote that was isolated from Ropy milk.
genome sequence| @ref 20215 |
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| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Staphylococcaceae |
| Genus Staphylococcus |
| Species Staphylococcus saprophyticus |
| Full scientific name Staphylococcus saprophyticus (Fairbrother 1940) Shaw et al. 1951 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 93.6 |
| Metadata FA analysis | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 44736 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Engineered | #Food production | #Dairy product | |
| #Environmental | #Microbial community | - |
| 44736 | Sample typeRopy milk |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 52488_C09 assembly for Macrococcoides caseolyticum NCTC963 | contig | 69966 | 67.99 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 93.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 71.40 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 74.70 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 69.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 88.70 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.06 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 70.13 | no |
| 125438 | aerobic | aerobicⓘ | yes | 70.85 | no |
| 125438 | thermophilic | thermophileⓘ | no | 93.98 | no |
| 125438 | flagellated | motile2+ⓘ | no | 81.43 | no |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #44736 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 4318 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive141646.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data