Name: Novosphingobium panipatense SM16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14163

Type strain:

Species: Novosphingobium panipatense

Strain Designation: SM16

Culture col. no.: DSM 22890, CCM 7472, MTCC 9019

Strain history: <- R. Lal, Univ. Delhi, Dept. Zoology, India; SM16

NCBI tax ID(s): 428991 (species)

Section

Novosphingobium panipatense SM16 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from oil-contaminated soil.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Novosphingobium*
	Species	**Novosphingobium panipatense**
	Full Scientific Name (LPSN)	Novosphingobium panipatense Gupta et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #32592]	Gram stain	negative

[Ref.: #32592]	Cell length	1.5 µm

[Ref.: #32592]	Cell width	0.6 µm

[Ref.: #32592]	Cell shape	rod-shaped

[Ref.: #32592]	Motility	no

[Ref.: #32592]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32592]			growth	28-37 °C
[Ref.: #32592]			optimum	32.5 °C

[Ref.: #32592]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #32592]			optimum	7.2

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32592]

Oxygen tolerance

aerobe

[Ref.: #32592]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32592]	acetate ChEBI	+	carbon source
[Ref.: #32592]	arabinose ChEBI	+	carbon source
[Ref.: #32592]	fructose ChEBI	+	carbon source
[Ref.: #32592]	galactose ChEBI	+	carbon source
[Ref.: #32592]	glucose ChEBI	+	carbon source
[Ref.: #32592]	lactose ChEBI	+	carbon source
[Ref.: #32592]	maltose ChEBI	+	carbon source
[Ref.: #32592]	mannose ChEBI	+	carbon source
[Ref.: #32592]	nitrate ChEBI	+	reduction
[Ref.: #32592]	pyruvate ChEBI	+	carbon source
[Ref.: #32592]	raffinose ChEBI	+	carbon source
[Ref.: #32592]	sorbitol ChEBI	+	carbon source
[Ref.: #32592]	trehalose ChEBI	+	carbon source
[Ref.: #32592]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16605]	Sample type/isolated from	oil-contaminated soil
[Ref.: #16605]	Geographic location (country and/or sea, region)	Panipat
[Ref.: #16605]	Country	India
[Ref.: #16605]	Country ISO 3 Code	IND
[Ref.: #16605]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF424402 (>99% sequence identity) for Novosphingobium from Microbeatlas

Aquatic Samples	1963
Soil Samples	623
Animal Samples	828
Plant Samples	663
Total Samples	4077

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16605]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16605]	Novosphingobium panipatense strain SM16 16S ribosomal RNA gene, partial sequence	EF424402	1396	ENA	428991 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Novosphingobium panipatense SM16	2706794921	draft	JGI IMG/M	428991 tax ID	*

Availability in culture collections External links

[Ref.: #16605]

Culture collection no.

DSM 22890, CCM 7472, MTCC 9019

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novosphingobium clariflavum sp. nov., isolated from a household product plant.	Zhang X, Liu Y, Lin Y, Wang L, Yao S, Cao Y, Zhai L, Tang X, Zhang L, Zhang T, Ge Y, Ling K, Liu J, Cheng C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001803	2017	*
Phylogeny	Novosphingobium profundi sp. nov. isolated from a deep-sea seamount.	Zhang DC, Liu YX, Huang HJ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0769-3	2016	*
Phylogeny	Novosphingobium panipatense sp. nov. and Novosphingobium mathurense sp. nov., from oil-contaminated soil.	Gupta SK, Lal D, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.65743-0	2009	*

References

#16605

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22890

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32592

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28805 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28805

IJSEM 156 2009 ( DOI 10.1099/ijs.0.65743-0 , PubMed 19126741 )

* These data were automatically processed and therefore are not curated

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