Oligella urethralis (CCUG 1964, ATCC 43533, NCTC 11999)

Name: Oligella urethralis (CCUG 1964, ATCC 43533, NCTC 11999)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141453

Type strain

Culture col. no. CCUG 1964 ATCC 43533 NCTC 11999 LMG 6231

NCBI tax ID(s) 90245

Special Collections CCUG

Links

Oligella urethralis CCUG 1964 is a prokaryote that was isolated from Human urine.

genome sequence

Name and taxonomic classification

SI-ID 3742

LMG 6231,CCUG 1964,ATCC 43533,NCTC 11999,CCUG 1984

@ref 20215

Last LPSN update 2025-12-16 10:03:51

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Oligella

Species Oligella urethralis

Full scientific name Oligella urethralis (Lautrop et al. 1970) Rossau et al. 1987

Synonyms (1)

Moraxella urethralis

BacDive ID	Other strains from **Oligella urethralis** (46)	Type strain
355	O. urethralis MC213, MC 213, DSM 7531, ATCC 17960, CCUG ... (type strain)
134839	O. urethralis CIP 75.13
135179	O. urethralis WM 6, CCUG 994, LMG 5304, CIP 81.33
135492	O. urethralis CIP 100041
136018	O. urethralis CIP 101285
137539	O. urethralis 48-76, Fau, CIP 76.22
138007	O. urethralis CIP 102456
138703	O. urethralis 156-86, CIP 102209
139059	O. urethralis A 240, CIP 78.58
139075	O. urethralis WM 20, CIP 81.34, CCUG 995, LMG 5132
139173	O. urethralis CIP 100725
139559	O. urethralis Goffiner, CIP 110857, CIP 200399
141265	O. urethralis CCUG 460, LMG 6232
141603	O. urethralis CCUG 3433, LMG 6227
141654	O. urethralis CCUG 4451
141715	O. urethralis CCUG 5112
141827	O. urethralis CCUG 7464, LMG 6836
141841	O. urethralis CCUG 7726, LMG 6838
142024	O. urethralis CCUG 10015
142085	O. urethralis CCUG 10532, LMG 6229
142346	O. urethralis CCUG 11920, LMG 6228
142556	O. urethralis CCUG 12956, LMG 6230
142633	O. urethralis CCUG 13464
142634	O. urethralis CCUG 13465
142635	O. urethralis CCUG 13466
143114	O. urethralis CCUG 17242
143115	O. urethralis CCUG 17243
143378	O. urethralis CCUG 18784
144082	O. urethralis CCUG 22871
144432	O. urethralis CCUG 24946
144554	O. urethralis CCUG 25646
145211	O. urethralis CCUG 27895
145788	O. urethralis CCUG 29588
146786	O. urethralis CCUG 32117
146995	O. urethralis CCUG 32615
147166	O. urethralis CCUG 32977
147529	O. urethralis CCUG 33746
147773	O. urethralis CCUG 34205
147967	O. urethralis CCUG 34593
148570	O. urethralis CCUG 35651
149245	O. urethralis CCUG 37334
149322	O. urethralis CCUG 37499
152942	O. urethralis CCUG 48085
153837	O. urethralis CCUG 51320
174278	O. urethralis CIMB122, CIMB 05-2562, CRBIP17.122
174279	O. urethralis CIMB 04-9317, CRBIP17.123

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.25
125439	negative	98.2

Culture and growth conditions

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		93.405
125439		99.4

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
44458	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
44458	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human
#Host Body Product	#Fluids

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
44458	Human urine	1972-10-20	Göteborg	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	58529_D01 assembly for Oligella urethralis NCTC11999	contig	GCA_900454255	90245.6	2814123190	90245	74.04

Genome browser: GCA_900454255

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Oligella urethralis NCTC11999
NCBI: GCA_900454255

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	53.30	no
125439	gram_stain	BacteriaNetⓘ	negative	98.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	66.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Oligella urethralis strain NCTC11999
PATRIC: 90245.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.25	no
125438	anaerobic	anaerobicⓘ	no	91.38	no
125438	aerobic	aerobicⓘ	yes	70.44	no
125438	spore-forming	spore-formingⓘ	no	93.41	no
125438	thermophilic	thermophileⓘ	no	94.50	no
125438	flagellated	motile2+ⓘ	no	76.88	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44458	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 1964
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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