Name: Novosphingobium aromaticivorans F199
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14143

Type strain:

Species: Novosphingobium aromaticivorans

Strain Designation: F199

Culture col. no.: DSM 12444, SMCC F199

Strain history: 1997, D. L. Balkwill, Florida State Univ., Tallahassee, FL, USA: strain SMCC F199

NCBI tax ID(s): 279238 (strain), 48935 (species)

Other strains from Novosphingobium aromaticivorans

N. aromaticivorans CIP 109990

Section

Novosphingobium aromaticivorans F199 is a mesophilic bacterium that was isolated from subsurface cretaceous age formation at 410 m depth.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Novosphingobium*
	Species	**Novosphingobium aromaticivorans**
	Full Scientific Name (PNU)	Novosphingobium aromaticivorans corrig. (Balkwill et al. 1997) Takeuchi et al. 2001

	Synonym	Novosphingobium aromaticivorum
	Synonym	Sphingomonas stygia
	Synonym	Sphingomonas aromaticivorans
	Synonym	Novosphingobium stygium
	Synonym	Novosphingobium stygiae

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %99.954

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4720]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 464 (DSMZ Medium 464a)

[Ref.: #4720]

Culture medium growth

[Ref.: #4720]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #4720]

Culture medium composition

expand / minimize

[Ref.: #4720]

Culture medium

MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)

[Ref.: #4720]

Culture medium growth

[Ref.: #4720]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #4720]

Culture medium composition

expand / minimize

[Ref.: #38534]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38534]

Culture medium growth

[Ref.: #38534]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4720]			growth	30 °C
[Ref.: #38534]			growth	30 °C

[Ref.: #4720]	Temperature range	mesophilic
[Ref.: #38534]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #4720]	22363	-	-	-	-	-	+	-	+	+	-	+	-	+	+	-	-	+	-	-	-	+
[Ref.: #4720]	20588	-	-	-	-	-	+	-	+	+	-	+	-	+	+	-	-	+	-	-	-	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	3-chlorocatechol degradation	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	ethylmalonyl-CoA pathway	100	5 of 5
[Ref.: #66794]	gallate degradation	100	5 of 5
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	phenol degradation	95	19 of 20
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	vitamin B12 metabolism	91.18	31 of 34
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	90	9 of 10
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	3-phenylpropionate degradation	86.67	13 of 15
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	glutathione metabolism	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	d-xylose degradation	81.82	9 of 11
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	methylglyoxal degradation	80	4 of 5
[Ref.: #66794]	starch degradation	80	8 of 10
[Ref.: #66794]	purine metabolism	79.79	75 of 94
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	tryptophan metabolism	71.05	27 of 38
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	androgen and estrogen metabolism	68.75	11 of 16
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	degradation of hexoses	66.67	12 of 18
[Ref.: #66794]	polyamine pathway	65.22	15 of 23
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	degradation of sugar acids	64	16 of 25
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	degradation of pentoses	60.71	17 of 28
[Ref.: #66794]	vitamin K metabolism	60	3 of 5
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	lipid metabolism	58.06	18 of 31
[Ref.: #66794]	4-hydroxymandelate degradation	55.56	5 of 9
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	cholesterol biosynthesis	54.55	6 of 11
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	carotenoid biosynthesis	50	11 of 22
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	alginate biosynthesis	50	2 of 4
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	oxidative phosphorylation	47.25	43 of 91
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	ginsenoside metabolism	43.75	7 of 16
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4720]	Sample type/isolated from	subsurface cretaceous age formation at 410 m depth
[Ref.: #4720]	Geographic location (country and/or sea, region)	S.C., Allendale
[Ref.: #4720]	Country	USA
[Ref.: #4720]	Country ISO 3 Code	USA
[Ref.: #4720]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U20756 (>99% sequence identity) for Novosphingobium aromaticivorans from Microbeatlas

Aquatic Samples	1844
Soil Samples	632
Animal Samples	209
Plant Samples	145
Total Samples	2830

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4720]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4720]	Novosphingobium aromaticivorans strain SMCC F199 16S small subunit ribosomal RNA gene, partial sequence	U20756	1406	ENA	48935 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Novosphingobium aromaticivorans DSM 12444 DSM 12444	GCA_000013325	complete	GenBank	279238 tax ID	*
[Ref.: #66792]	Novosphingobium aromaticivorans DSM 12444	279238.34	plasmid	PATRIC	279238 tax ID	*
[Ref.: #66792]	Novosphingobium aromaticivorans DSM 12444	279238.18	complete	PATRIC	279238 tax ID	*
[Ref.: #66792]	Novosphingobium aromaticivorans DSM 12444	279238.33	plasmid	PATRIC	279238 tax ID	*
[Ref.: #66792]	Novosphingobium aromaticivorans DSM 12444	640427126	complete	JGI IMG/M	48935 tax ID	*

[Ref.: #4720]

GC-content

64.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Novosphingobium aromaticivorans DSM 12444 DSM 12444 NCBI: GCA_000013325.1
[Ref.: #69480]	anaerobic	no	99.069	no
[Ref.: #69480]	spore-forming	no	99.992	yes
[Ref.: #69480]	gram-positive	no	99.954	yes
[Ref.: #69480]	thermophile	no	99.835	no
[Ref.: #69480]	motile	no	75.102	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Novosphingobium aromaticivorans DSM 12444 DSM 12444 NCBI: GCA_000013325.1
[Ref.: #69481]	spore-forming	no	98	no

Availability in culture collections External links

[Ref.: #4720]

Culture collection no.

DSM 12444, SMCC F199

[Ref.: #20218]

Associated Passport(s) in StrainInfo

44778, 44779

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Pathway discovery and engineering for cleavage of a beta-1 lignin-derived biaryl compound.	Presley GN, Werner AZ, Katahira R, Garcia DC, Haugen SJ, Ramirez KJ, Giannone RJ, Beckham GT, Michener JK	Metab Eng	10.1016/j.ymben.2021.02.003	2021	*
Metabolism	Redundancy in aromatic O-demethylation and ring opening reactions in Novosphingobium aromaticivorans and their impact in the metabolism of plant derived phenolics.	Perez JM, Kontur WS, Gehl C, Gille DM, Ma Y, Niles AV, Umana G, Donohue TJ, Noguera DR	Appl Environ Microbiol	10.1128/AEM.02794-20	2021	*
Phylogeny	Novosphingobium olei sp. nov., with the ability to degrade diesel oil, isolated from oil-contaminated soil and proposal to reclassify Novosphingobium stygium as a later heterotypic synonym of Novosphingobium aromaticivorans.	Chaudhary DK, Dahal RH, Kim DU, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004628	2021	*
Genetics	A New Biosensor for Stilbenes and a Cannabinoid Enabled by Genome Mining of a Transcriptional Regulator.	Sun H, Zhao H, Ang EL	ACS Synth Biol	10.1021/acssynbio.9b00443	2020	*
Phylogeny	Description of Novosphingobiumflavum sp. nov., isolated from soil.	Nguyen TM, Myung SW, Jang H, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001242	2016	*
Phylogeny	Proposal of Novosphingobium rhizosphaerae sp. nov., isolated from the rhizosphere.	Kampfer P, Martin K, McInroy JA, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijs.0.070375-0	2014	*
Enzymology	A group of sequence-related sphingomonad enzymes catalyzes cleavage of beta-aryl ether linkages in lignin beta-guaiacyl and beta-syringyl ether dimers.	Gall DL, Ralph J, Donohue TJ, Noguera DR	Environ Sci Technol	10.1021/es503886d	2014	*
Phylogeny	Novosphingobium kunmingense sp. nov., isolated from a phosphate mine.	Xie F, Quan S, Liu D, He W, Wang Y, Ma H, Chen G, Chao Y, Qian S	Int J Syst Evol Microbiol	10.1099/ijs.0.057273-0	2014	*
Metabolism	Structural basis for heavy metal detoxification by an Atm1-type ABC exporter.	Lee JY, Yang JG, Zhitnitsky D, Lewinson O, Rees DC	Science	10.1126/science.1246489	2014	*
Metabolism	Structure and function of a novel LD-carboxypeptidase a involved in peptidoglycan recycling.	Das D, Herve M, Elsliger MA, Kadam RU, Grant JC, Chiu HJ, Knuth MW, Klock HE, Miller MD, Godzik A, Lesley SA, Deacon AM, Mengin-Lecreulx D, Wilson IA	J Bacteriol	10.1128/JB.00900-13	2013	*
Metabolism	The dynamics of camphor in the cytochrome P450 CYP101D2.	Vohra S, Musgaard M, Bell SG, Wong LL, Zhou W, Biggin PC	Protein Sci	10.1002/pro.2309	2013	*
Phylogeny	Novosphingobium ginsenosidimutans sp. nov., with the ability to convert ginsenoside.	Kim JK, He D, Liu QM, Park HY, Jung MS, Yoon MH, Kim SC, Im WT	J Microbiol Biotechnol	10.4014/jmb.1212.12053	2013	*
Metabolism	Discovery of pinoresinol reductase genes in sphingomonads.	Fukuhara Y, Kamimura N, Nakajima M, Hishiyama S, Hara H, Kasai D, Tsuji Y, Narita-Yamada S, Nakamura S, Katano Y, Fujita N, Katayama Y, Fukuda M, Kajita S, Masai E	Enzyme Microb Technol	10.1016/j.enzmictec.2012.10.004	2012	*
Metabolism	Structure and function of CYP108D1 from Novosphingobium aromaticivorans DSM12444: an aromatic hydrocarbon-binding P450 enzyme.	Bell SG, Yang W, Yorke JA, Zhou W, Wang H, Harmer J, Copley R, Zhang A, Zhou R, Bartlam M, Rao Z, Wong LL	Acta Crystallogr D Biol Crystallogr	10.1107/S090744491200145X	2012	*
Enzymology	Crystallization and preliminary X-ray analysis of CYP153C1 from Novosphingobium aromaticivorans DSM12444.	Zhou R, Huang C, Zhang A, Bell SG, Zhou W, Wong LL	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S174430911102464X	2011	*
Metabolism	Structural Analysis of CYP101C1 from Novosphingobium aromaticivorans DSM12444.	Ma M, Bell SG, Yang W, Hao Y, Rees NH, Bartlam M, Zhou W, Wong LL, Rao Z	Chembiochem	10.1002/cbic.201000537	2011	*
Metabolism	The structure of CYP101D2 unveils a potential path for substrate entry into the active site.	Yang W, Bell SG, Wang H, Zhou W, Bartlam M, Wong LL, Rao Z	Biochem J	10.1042/BJ20101017	2011	*
Enzymology	Molecular characterization of a class I P450 electron transfer system from Novosphingobium aromaticivorans DSM12444.	Yang W, Bell SG, Wang H, Zhou W, Hoskins N, Dale A, Bartlam M, Wong LL, Rao Z	J Biol Chem	10.1074/jbc.M110.118349	2010	*
Phylogeny	[Predominant strains of polycyclic aromatic hydrocarbon-degrading consortia from deep sea of the Middle Atlantic Ridge].	Cui Z, Shao Z	Wei Sheng Wu Xue Bao		2009	*
Enzymology	Purification, crystallization and preliminary X-ray analysis of cytochrome P450 219A1 from Novosphingobium aromaticivorans DSM 12444.	Hong C, Bell SG, Yang W, Wang H, Hao Y, Li X, Zhou W, Bartlam M, Wong LL	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309109005648	2009	*
Metabolism	Identification of bacterial carotenoid cleavage dioxygenase homologues that cleave the interphenyl alpha,beta double bond of stilbene derivatives via a monooxygenase reaction.	Marasco EK, Schmidt-Dannert C	Chembiochem	10.1002/cbic.200700724	2008	*
Metabolism	Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov.	Balkwill DL, Drake GR, Reeves RH, Fredrickson JK, White DC, Ringelberg DB, Chandler DP, Romine MF, Kennedy DW, Spadoni CM	Int J Syst Bacteriol	10.1099/00207713-47-1-191	1997	*
	Genome-Wide Identification of Transcription Start Sites in Two Alphaproteobacteria, Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444.	Myers KS, Vera JM, Lemmer KC, Linz AM, Landick R, Noguera DR, Donohue TJ	Microbiol Resour Announc	10.1128/MRA.00880-20	2020	*
	Rearrangement-Free Hydroxylation of Methylcubanes by a Cytochrome P450: The Case for Dynamical Coupling of C-H Abstraction and Rebound.	Sarkar MR, Houston SD, Savage GP, Williams CM, Krenske EH, Bell SG, De Voss JJ	J Am Chem Soc	10.1021/jacs.9b08064	2019	*

References

#4720

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12444

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38534 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Search for species Novosphingobium aromaticivorans in external resources:
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Novosphingobium aromaticivorans DSM 12444 DSM 12444

Novosphingobium aromaticivorans DSM 12444 DSM 12444

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