Name: Blastomonas ursincola KR-99
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14142

Type strain:

Species: Blastomonas ursincola

Strain Designation: KR-99, EY 4250

Culture col. no.: DSM 9006, JCM 13370, CIP 106843, JCM 10397

Strain history: CIP <- 2000, E. Yabuuchi, Osaka, Japan, strain EY 4250 <- DSMZ <- V.M. Gorlenko <- V. Yurkov: strain KR-99, Erythromicrobium ursincola

NCBI tax ID(s): 56361 (species)

SI-ID 44208

CIP 106843, DSM 9006, JCM 10397, JCM 13370

Section

Blastomonas ursincola KR-99 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater cyanobacterial mat developing in the thermal springs at 34 to 40°C.

Gram-negative
motile
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Blastomonas*
	Species	**Blastomonas ursincola**
	Full Scientific Name (LPSN)	Blastomonas ursincola (Yurkov et al. 1997) Hiraishi et al. 2000

	Synonym	"Erythromicrobium* ursincola"*
	Synonym	Erythromonas ursincola
	Synonym	Sphingomonas ursincola

Information on morphological and physiological properties Morphology

[Ref.: #123757]	Gram stain	negative

[Ref.: #123757]	Cell shape	rod-shaped

[Ref.: #123757]	Motility	yes

[Ref.: #123757]	Pigment production	no
[Ref.: #123757]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3460]

Culture medium

PYEA MEDIUM (DSMZ Medium 364)

[Ref.: #3460]

Culture medium growth

[Ref.: #3460]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3460]

Culture medium composition

expand / minimize

[Ref.: #3460]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #3460]

Culture medium growth

[Ref.: #3460]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3460]

Culture medium composition

expand / minimize

[Ref.: #33011]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33011]

Culture medium growth

[Ref.: #33011]

Culture medium composition

expand / minimize

[Ref.: #123757]

Culture medium

CIP Medium 72

[Ref.: #123757]

Culture medium growth

[Ref.: #123757]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3460]		growth	26 °C
[Ref.: #33011]		growth	25 °C
[Ref.: #67770]		growth	26 °C
[Ref.: #123757]		growth	25-37 °C
[Ref.: #123757]	no	growth	5 °C
[Ref.: #123757]	no	growth	10 °C
[Ref.: #123757]	no	growth	41 °C

[Ref.: #3460]	Temperature range	mesophilic
[Ref.: #33011]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #123757]	Temperature range	mesophilic
[Ref.: #123757]	Temperature range	psychrophilic
[Ref.: #123757]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123757]

Oxygen tolerance

obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #123757]	NaCl		growth	0-6	%
[Ref.: #123757]	NaCl	no	growth	8	%
[Ref.: #123757]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123757]	esculin ChEBI	-	hydrolysis
[Ref.: #123757]	nitrate ChEBI	-	reduction
[Ref.: #123757]	nitrate ChEBI	-	respiration
[Ref.: #123757]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123757]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #123757]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #123757]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #123757]	amylase	-
[Ref.: #123757]	beta-galactosidase	+	3.2.1.23
[Ref.: #123757]	caseinase	-	3.4.21.50
[Ref.: #123757]	catalase	+	1.11.1.6
[Ref.: #123757]	DNase	-
[Ref.: #123757]	gelatinase	-
[Ref.: #123757]	lecithinase	-
[Ref.: #123757]	lipase	-
[Ref.: #123757]	lysine decarboxylase	-	4.1.1.18
[Ref.: #123757]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123757]	oxidase	+
[Ref.: #123757]	protease	-
[Ref.: #123757]	tryptophan deaminase	-
[Ref.: #123757]	tween esterase	+
[Ref.: #123757]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123757]	1872	not determinedn.d.	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3460]	Sample type/isolated from	freshwater cyanobacterial mat developing in the thermal springs at 34 to 40°C
[Ref.: #3460]	Geographic location (country and/or sea, region)	Kamchatka Island
[Ref.: #3460]	Country	Russia
[Ref.: #3460]	Country ISO 3 Code	RUS
[Ref.: #3460]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Freshwater cyanobacterial mat

[Ref.: #123757]	Sample type/isolated from	Cyanobacterial mat
* marker position based on {}

Isolation sources categories

#Host	#Microbial	#Bacteria
#Environmental	#Aquatic	#Freshwater
#Environmental	#Microbial community	#Microbial mat
#Environmental	#Aquatic	#Thermal spring

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y10677 (>99% sequence identity) for Blastomonas from Microbeatlas

Aquatic Samples	21935
Soil Samples	10685
Animal Samples	16529
Plant Samples	4469
Total Samples	53618

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3460]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123757]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Erythromonas ursincola gene for 16S ribosomal RNA	AB024289	1476	ENA	56361 tax ID	*
[Ref.: #20218]	E.ursincola 16S rRNA gene, partial	Y10677	1430	ENA	56361 tax ID	*

[Ref.: #67770]

GC-content

65.4 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #3460]

Culture collection no.

DSM 9006, JCM 13370, CIP 106843, JCM 10397

[Ref.: #83307]

SI-ID 44208

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Blastomonas fulva sp. nov., aerobic photosynthetic bacteria isolated from a Microcystis culture.	Lee HG, Ko SR, Lee JW, Lee CS, Ahn CY, Oh HM, Jin L	Int J Syst Evol Microbiol	10.1099/ijsem.0.002084	2017	*
Phylogeny	Blastomonas quesadae sp. nov., isolated from a saline soil by dilution-to-extinction cultivation.	Castro DJ, Llamas I, Bejar V, Martinez-Checa F	Int J Syst Evol Microbiol	10.1099/ijsem.0.001902	2017	*
Phylogeny	Binariimonas pacifica gen. nov., sp. nov., a Novel Marine Bacterium of Family Sphingomonadaceae Isolated from East Pacific Ocean Surface Seawater.	Zhao Z, Sun J, Zhang R, Jiao N	Curr Microbiol	10.1007/s00284-015-0948-x	2015	*
Phylogeny	Blastomonas aquatica sp. nov., a bacteriochlorophyll-containing bacterium isolated from lake water.	Xiao N, Liu Y, Liu X, Gu Z, Jiao N, Liu H, Zhou Y, Shen L	Int J Syst Evol Microbiol	10.1099/ijs.0.000153	2015	*
Phylogeny	Emendation of the description of Blastomonas natatoria (Sly 1985) Sly and Cahill 1997 as an aerobic photosynthetic bacterium and reclassification of Erythromonas ursincola Yurkov et al. 1997 as Blastomonas ursincola comb. nov.	Hiraishi A, Kuraishi H, Kawahara K	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1113	2000	*
Phylogeny	Proposal of Sphingomonas suberifaciens (van Bruggen, Jochimsen and Brown 1990) comb. nov., sphingomonas natatoria (Sly 1985) comb. nov., Sphingomonas ursincola (Yurkov et al. 1997) comb. nov., and emendation of the genus Sphingomonas.	Yabuuchi E, Kosako Y, Naka T, Suzuki S, Yano I	Microbiol Immunol	10.1111/j.1348-0421.1999.tb02414.x	1999	*

References

#3460

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9006

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33011 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83307

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44208.1 )

#123757 Collection of Institut Pasteur ; Curators of the CIP; CIP 106843
* These data were automatically processed and therefore are not curated

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