Sphingomonas jatrophae (DSM 27345, KACC 17593, S5-249)

Name: Sphingomonas jatrophae (DSM 27345, KACC 17593, S5-249)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141165

Type strain

Strain Designation S5-249

Culture col. no. DSM 27345 KACC 17593 S5-249

NCBI tax ID(s) 1166337

Special Collections DSMZ Literature strains

History DSMZ <- M. Madhaiyan, Temasek Life Sciences Laboratory, Univ. Singapore; S5-249

Links

Sphingomonas jatrophae S5-249 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from endophyte of surface-sterilized leaf tissue of Jatropha curcas.

Gram-negative rod-shaped colony-forming obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405139

DSM 27345

@ref 20215

Last LPSN update 2026-05-29 08:39:53

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Species Sphingomonas jatrophae

Full scientific name Sphingomonas jatrophae Madhaiyan et al. 2017

Synonyms (1)

Pararhizorhabdus jatrophae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
44084	negative	1.8-2.1 µm	0.5-0.8 µm	rod-shaped
125439	negative				94.663

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
44084	1.1-1.4 mm	yellow	circular	2 days	2xYT

Multimedia

@ref:	64987
multimedia content:	DSM_27345.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_27345.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
44084	2xYT
44084	Reasoner's 2A agar (R2A)
64987	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
44084	positive	growth	15-37
44084	positive	optimum	28-30
64987	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
44084	positive	optimum	6.0-7.0
44084	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
44084	obligate aerobe
125439	obligate aerobe	97.996

Spore formation

@ref	Spore formation	Confidence
44084
125439		98.975

Halophily

@ref	Salt	Growth	Tested relation	Concentration
44084	NaCl	positive	growth	0-6 %(w/v)
44084	NaCl	positive	optimum	4 %(w/v)

Observation

44084

Observationsphingolipid-producing

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
44084	16193 ChEBI	3-hydroxybenzoate	-	assimilation
44084	37054 ChEBI	3-hydroxybutyrate	+	assimilation
44084	17879 ChEBI	4-hydroxybenzoate	-	assimilation
44084	17128 ChEBI	adipate	-	assimilation
44084	27613 ChEBI	amygdalin	-	builds acid from
44084	18305 ChEBI	arbutin	-	builds acid from
44084	85146 ChEBI	carboxymethylcellulose	+	hydrolysis
44084		casein	+	hydrolysis
44084	17057 ChEBI	cellobiose	-	builds acid from
44084	17108 ChEBI	D-arabinose	-	builds acid from
44084	18333 ChEBI	D-arabitol	-	builds acid from
44084	15824 ChEBI	D-fructose	-	builds acid from
44084	28847 ChEBI	D-fucose	-	builds acid from
44084	12936 ChEBI	D-galactose	-	builds acid from
44084	17634 ChEBI	D-glucose	-	builds acid from
44084	17634 ChEBI	D-glucose	+	assimilation
44084	16899 ChEBI	D-mannitol	-	assimilation
44084	16899 ChEBI	D-mannitol	-	builds acid from
44084	16024 ChEBI	D-mannose	-	builds acid from
44084	16024 ChEBI	D-mannose	+	assimilation
44084	16988 ChEBI	D-ribose	-	assimilation
44084	16988 ChEBI	D-ribose	-	builds acid from
44084	17924 ChEBI	D-sorbitol	-	assimilation
44084	17924 ChEBI	D-sorbitol	-	builds acid from
44084	16443 ChEBI	D-tagatose	-	builds acid from
44084	65327 ChEBI	D-xylose	-	builds acid from
44084	27689 ChEBI	decanoate	-	assimilation
44084	17113 ChEBI	erythritol	-	builds acid from
44084	4853 ChEBI	esculin	+	hydrolysis
44084		esculin ferric citrate	-	builds acid from
44084	16813 ChEBI	galactitol	-	builds acid from
44084	5291 ChEBI	gelatin	-	hydrolysis
44084	28066 ChEBI	gentiobiose	-	builds acid from
44084	17234 ChEBI	glucose	-	fermentation
44084	17754 ChEBI	glycerol	-	builds acid from
44084	28087 ChEBI	glycogen	-	assimilation
44084	28087 ChEBI	glycogen	-	builds acid from
44084	15443 ChEBI	inulin	-	builds acid from
44084	17240 ChEBI	itaconate	-	assimilation
44084	16977 ChEBI	L-alanine	-	assimilation
44084	30849 ChEBI	L-arabinose	+	assimilation
44084	30849 ChEBI	L-arabinose	+	builds acid from
44084	18403 ChEBI	L-arabitol	-	builds acid from
44084	18287 ChEBI	L-fucose	-	assimilation
44084	18287 ChEBI	L-fucose	-	builds acid from
44084	15971 ChEBI	L-histidine	-	assimilation
44084	17203 ChEBI	L-proline	+	assimilation
44084	62345 ChEBI	L-rhamnose	-	assimilation
44084	62345 ChEBI	L-rhamnose	-	builds acid from
44084	17115 ChEBI	L-serine	-	assimilation
44084	17266 ChEBI	L-sorbose	-	builds acid from
44084	65328 ChEBI	L-xylose	-	builds acid from
44084	24996 ChEBI	lactate	-	assimilation
44084	17716 ChEBI	lactose	-	builds acid from
44084	25115 ChEBI	malate	-	assimilation
44084	17306 ChEBI	maltose	-	assimilation
44084	17306 ChEBI	maltose	-	builds acid from
44084	17306 ChEBI	maltose	+	assimilation
44084	6731 ChEBI	melezitose	-	builds acid from
44084	28053 ChEBI	melibiose	-	assimilation
44084	28053 ChEBI	melibiose	-	builds acid from
44084	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
44084	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
44084	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
44084	17268 ChEBI	myo-inositol	-	assimilation
44084	17268 ChEBI	myo-inositol	-	builds acid from
44084	506227 ChEBI	N-acetylglucosamine	-	builds acid from
44084	506227 ChEBI	N-acetylglucosamine	+	assimilation
44084	17632 ChEBI	nitrate	-	reduction
44084	16301 ChEBI	nitrite	-	reduction
44084	18401 ChEBI	phenylacetate	-	assimilation
44084		potassium 2-dehydro-D-gluconate	-	assimilation
44084		potassium 2-dehydro-D-gluconate	-	builds acid from
44084		potassium 5-dehydro-D-gluconate	-	assimilation
44084		potassium 5-dehydro-D-gluconate	-	builds acid from
44084	32032 ChEBI	potassium gluconate	-	assimilation
44084	32032 ChEBI	potassium gluconate	-	builds acid from
44084	17272 ChEBI	propionate	+	assimilation
44084	16634 ChEBI	raffinose	-	builds acid from
44084	15963 ChEBI	ribitol	-	builds acid from
44084	17814 ChEBI	salicin	-	assimilation
44084	17814 ChEBI	salicin	-	builds acid from
44084	32954 ChEBI	sodium acetate	-	assimilation
44084	53258 ChEBI	sodium citrate	-	assimilation
44084	62983 ChEBI	sodium malonate	-	assimilation
44084	28017 ChEBI	starch	-	builds acid from
44084	28017 ChEBI	starch	-	hydrolysis
44084	9300 ChEBI	suberic acid	-	assimilation
44084	17992 ChEBI	sucrose	-	assimilation
44084	17992 ChEBI	sucrose	-	builds acid from
44084	27082 ChEBI	trehalose	-	builds acid from
44084	32528 ChEBI	turanose	-	builds acid from
44084	18186 ChEBI	tyrosine	-	hydrolysis
44084	31011 ChEBI	valerate	+	assimilation
44084	37166 ChEBI	xylan	-	hydrolysis
44084	17151 ChEBI	xylitol	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
44084	28971	ampicillin	25 µg/mL
44084	3393	carbenicillin		100 µg/mL
44084	17698	chloramphenicol	25 µg/mL
44084	24753	hygromycin		50 µg/mL
44084	6104	kanamycin		250 µg/mL
44084	100147	nalidixic acid	25 µg/mL
44084	28077	rifampicin	25 µg/mL
44084	9215	spectinomycin	25 µg/mL
44084	27902	tetracycline	25 µg/mL

Metabolite production

@ref	Chebi-ID	Metabolite	Production
44084	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
44084	acid phosphatase	+	3.1.3.2
44084	alkaline phosphatase	+	3.1.3.1
44084	alpha-chymotrypsin	-	3.4.21.1
44084	alpha-fucosidase	-	3.2.1.51
44084	alpha-galactosidase	-	3.2.1.22
44084	alpha-glucosidase	-	3.2.1.20
44084	alpha-mannosidase	-	3.2.1.24
44084	arginine dihydrolase	-	3.5.3.6
44084	beta-galactosidase	+/-	3.2.1.23
44084	beta-glucosidase	-	3.2.1.21
44084	beta-glucuronidase	-	3.2.1.31
44084	catalase	+	1.11.1.6
44084	cystine arylamidase	-	3.4.11.3
44084	cytochrome oxidase	+	1.9.3.1
44084	esterase (C 4)	+
44084	esterase Lipase (C 8)	+
44084	leucine arylamidase	+	3.4.11.1
44084	lipase (C 14)	-
44084	N-acetyl-beta-glucosaminidase	-	3.2.1.52
44084	naphthol-AS-BI-phosphohydrolase	+
44084	trypsin	+	3.4.21.4
44084	urease	-	3.5.1.5
44084	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	biotin biosynthesis	100	4 of 4
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	methylglyoxal degradation	100	5 of 5
66794	Entner Doudoroff pathway	100	10 of 10
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	suberin monomers biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	phenylalanine metabolism	92.31	12 of 13
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	propanol degradation	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	citric acid cycle	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	pentose phosphate pathway	81.82	9 of 11
66794	purine metabolism	80.85	76 of 94
66794	threonine metabolism	80	8 of 10
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	propionate fermentation	80	8 of 10
66794	factor 420 biosynthesis	80	4 of 5
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	alanine metabolism	75.86	22 of 29
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	toluene degradation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	methionine metabolism	73.08	19 of 26
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	leucine metabolism	69.23	9 of 13
66794	flavin biosynthesis	66.67	10 of 15
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	enterobactin biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	acetoin degradation	66.67	2 of 3
66794	tryptophan metabolism	65.79	25 of 38
66794	glutathione metabolism	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	polyamine pathway	60.87	14 of 23
66794	myo-inositol biosynthesis	60	6 of 10
66794	3-phenylpropionate degradation	60	9 of 15
66794	glycogen metabolism	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	histidine metabolism	58.62	17 of 29
66794	arginine metabolism	58.33	14 of 24
66794	lipid metabolism	58.06	18 of 31
66794	tyrosine metabolism	57.14	8 of 14
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	degradation of sugar alcohols	56.25	9 of 16
66794	cysteine metabolism	55.56	10 of 18
66794	phenol degradation	55	11 of 20
66794	metabolism of disaccharids	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	glycogen biosynthesis	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	ascorbate metabolism	50	11 of 22
66794	vitamin E metabolism	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	lysine metabolism	47.62	20 of 42
66794	degradation of pentoses	46.43	13 of 28
66794	sulfate reduction	46.15	6 of 13
66794	degradation of hexoses	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	carotenoid biosynthesis	40.91	9 of 22
66794	oxidative phosphorylation	40.66	37 of 91
66794	vitamin K metabolism	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	glycine metabolism	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	carnitine metabolism	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	vitamin B12 metabolism	35.29	12 of 34
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	chlorophyll metabolism	33.33	6 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	degradation of sugar acids	32	8 of 25
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	starch degradation	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	cholesterol biosynthesis	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	catecholamine biosynthesis	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12

Fatty acid profile

Metadata FA analysis

@ref

44084

Fatty acid	Percentage
C18:1ω7c / C18:1ω9t / C18:1ω12t	66.5
C16:1	8.5
C16:1ω7t / iso-C15:0 2-OH /C16:1ω7c	7.5
C14:0 2OH	7.2
C17:1ω6c	3.2
C18:1ω6c	1.9
C16:1ω5c	1.8
C18:0	1.7
C14:0	1.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
44084	endophyte of surface-sterilized leaf tissue of Jatropha curcas	2009-09	Agrotechnology Experimental Station	Singapore	SGP	Asia	1.43667	103.709 1.43667/103.709	R2A/Nfb medium	N-free semi-solid medium	3 days	30
64987	surface-sterilized stem tissue of the Jatropha curcas L. cultivar (‘B1-2')		Agrotechnology Experimental Station (1° 26' 12'' N 103° 42' 34'' E)	Singapore	SGP	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64987	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2654588199 annotated assembly for Sphingomonas jatrophae S5-249	contig	GCA_900113315	1166337.4	2654588199	1166337	77.75

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64987	Sphingomonas jatrophae strain S5-249 16S ribosomal RNA gene, partial sequence	JQ660172	1412		1166337

GC content

@ref	GC-content (mol%)	Method
44084	68.5	genome sequence analysis
64987	66.9	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2654588199 annotated assembly for Sphingomonas jatrophae S5-249
NCBI: GCA_900113315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.00	no
125439	motility	BacteriaNetⓘ	yes	65.27	no
125439	gram_stain	BacteriaNetⓘ	negative	94.66	no
125439	spore_formation	BacteriaNetⓘ	no	98.98	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas jatrophae sp. nov. and Sphingomonas carotinifaciens sp. nov., two yellow-pigmented endophytes isolated from stem tissues of Jatropha curcas L.	Madhaiyan M, Alex THH, Cho H, Kim SJ, Weon HY, Kwon SW, Whitman WB, Ji L	Int J Syst Evol Microbiol	10.1099/ijsem.0.002434	2017
Phylogeny	Sphingomonas montanisoli sp. nov., isolated from mountain soil.	Xu Z, Zhang Y, Muhammad Y, Wang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.004187	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44084	Munusamy Madhaiyan, Tan Hian Hwee Alex, Hayoung Cho, Soo-Jin Kim, Hang-Yeon Weon, Soon-Wo Kwon, William B. Whitman and Lianghui Ji: Sphingomonas jatrophae sp. nov. and Sphingomonas carotinifaciens sp. nov., two yellow-pigmented endophytes isolated from stem tissues of Jatropha curcas L.. IJSEM 67: 5150 - 5158 2017 ( DOI 10.1099/ijsem.0.002434 , PubMed 29087271 )
#64987	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27345
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Sphingomonas jatrophae (DSM 27345, KACC 17593, S5-249)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Pathway annotation

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900113315

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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