Name: Lysobacter sediminicola 7C-9
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 141139

Type strain:

Species: Lysobacter sediminicola

Strain Designation: 7C-9

Culture col. no.: JCM 18205, KACC 16617

Strain history: W.-T. Im 7C-09.

NCBI tax ID(s): 1176534 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Lysobacter sediminicola 7C-9 is an aerobe, non-halophilic, mesophilic bacterium that forms circular colonies and was isolated from freshwater sediment.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
non-halophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Lysobacter*
	Species	**Lysobacter sediminicola**
	Full Scientific Name (LPSN)	Lysobacter sediminicola Siddiqi and Im 2016

Information on morphological and physiological properties Morphology

[Ref.: #44056]	Gram stain	negative

[Ref.: #44056]	Cell length	1.5-3.0 µm

[Ref.: #44056]	Cell width	0.4-0.6 µm

[Ref.: #44056]	Cell shape	rod-shaped

[Ref.: #44056]	Motility	no

[Ref.: #44056]	Colony size	0.5-2 mm
[Ref.: #44056]	Colony color	yellowish
[Ref.: #44056]	Colony shape	circular
[Ref.: #44056]	Incubation period	2 days
[Ref.: #44056]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #44056]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #44056]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #44056]			optimum	30 °C
[Ref.: #67770]			growth	30 °C

	pH	Kind of pH		pH
[Ref.: #44056]			optimum	6.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44056]

Oxygen tolerance

aerobe

[Ref.: #44056]	Type of spore	spore
[Ref.: #44056]	Ability of spore formation	no

[Ref.: #44056]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44056]		NaCl		optimum	0	%(w/v)
[Ref.: #44056]		NaCl	no	growth	0.5	%(w/v)

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44056]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #44056]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #44056]	4-hydroxybenzoate ChEBI	+	assimilation
[Ref.: #44056]	adipate ChEBI	+	assimilation
[Ref.: #44056]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #44056]	casein	-	hydrolysis
[Ref.: #44056]	D-glucose ChEBI	-	assimilation
[Ref.: #44056]	D-mannitol ChEBI	-	assimilation
[Ref.: #44056]	D-mannose ChEBI	-	assimilation
[Ref.: #44056]	D-ribose ChEBI	-	assimilation
[Ref.: #44056]	D-sorbitol ChEBI	-	assimilation
[Ref.: #44056]	decanoate ChEBI	-	assimilation
[Ref.: #44056]	dna ChEBI	-	hydrolysis
[Ref.: #44056]	esculin ChEBI	-	hydrolysis
[Ref.: #44056]	gelatin ChEBI	+	hydrolysis
[Ref.: #44056]	glycogen ChEBI	-	assimilation
[Ref.: #44056]	itaconate ChEBI	+	assimilation
[Ref.: #44056]	L-arabinose ChEBI	-	assimilation
[Ref.: #44056]	L-fucose ChEBI	-	assimilation
[Ref.: #44056]	L-histidine ChEBI	-	assimilation
[Ref.: #44056]	L-proline ChEBI	+	assimilation
[Ref.: #44056]	L-rhamnose ChEBI	-	assimilation
[Ref.: #44056]	L-serine ChEBI	-	assimilation
[Ref.: #44056]	lactate ChEBI	-	assimilation
[Ref.: #44056]	maltose ChEBI	+	assimilation
[Ref.: #44056]	melibiose ChEBI	-	assimilation
[Ref.: #44056]	myo-inositol ChEBI	-	assimilation
[Ref.: #44056]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #44056]	nitrate ChEBI	-	reduction
[Ref.: #44056]	olive oil	-	hydrolysis
[Ref.: #44056]	potassium 2-dehydro-D-gluconate	-	assimilation
[Ref.: #44056]	potassium 5-dehydro-D-gluconate	+	assimilation
[Ref.: #44056]	potassium gluconate ChEBI	+	assimilation
[Ref.: #44056]	propionate ChEBI	-	assimilation
[Ref.: #44056]	salicin ChEBI	-	assimilation
[Ref.: #44056]	sodium acetate ChEBI	+	assimilation
[Ref.: #44056]	sodium citrate ChEBI	-	assimilation
[Ref.: #44056]	sodium malonate ChEBI	-	assimilation
[Ref.: #44056]	starch ChEBI	+	hydrolysis
[Ref.: #44056]	suberic acid ChEBI	+	assimilation
[Ref.: #44056]	sucrose ChEBI	+	assimilation
[Ref.: #44056]	urea ChEBI	+	hydrolysis
[Ref.: #44056]	valerate ChEBI	+	assimilation
[Ref.: #44056]	xylan ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #44056]	acid phosphatase	-	3.1.3.2
[Ref.: #44056]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #44056]	alpha-fucosidase	+	3.2.1.51
[Ref.: #44056]	alpha-galactosidase	+	3.2.1.22
[Ref.: #44056]	alpha-glucosidase	+	3.2.1.20
[Ref.: #44056]	beta-galactosidase	+	3.2.1.23
[Ref.: #44056]	beta-glucosidase	+	3.2.1.21
[Ref.: #44056]	catalase	-	1.11.1.6
[Ref.: #44056]	cystine arylamidase	+	3.4.11.3
[Ref.: #44056]	cytochrome oxidase	-	1.9.3.1
[Ref.: #44056]	esterase (C 4)	+
[Ref.: #44056]	esterase Lipase (C 8)	+
[Ref.: #44056]	leucine arylamidase	-	3.4.11.1
[Ref.: #44056]	lipase (C 14)	+
[Ref.: #44056]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #44056]	trypsin	-	3.4.21.4
[Ref.: #44056]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44056]

Fatty acid	Percentage
C15:0 iso	28.6
C17:1 iso ω9c / C16:0 10-methyl	16.3
C16:0 iso	14.4
C17:0 iso	9.2
C16:1ω6c / C16:1ω7c	5.8
iso-C11:0-3-OH	4.7
C11:0 iso	4.5
C16:0	2.7
C15:0 anteiso	2.6
iso-C16:1-H	1.6
C17:0 anteiso	1.3
C15:1-H / C13:0-3-OH	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44056]	Sample type/isolated from	freshwater sediment
[Ref.: #44056]	Geographic location (country and/or sea, region)	Gapcheon Stream, Daejeon City
[Ref.: #44056]	Country	Republic of Korea
[Ref.: #44056]	Country ISO 3 Code	KOR
[Ref.: #44056]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Freshwater sediment in South Korea
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ349048 (>99% sequence identity) for Lysobacter sediminicola subclade from Microbeatlas

Aquatic Samples	300
Soil Samples	112
Animal Samples	49
Plant Samples	13
Total Samples	474

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #44056]	Lysobacter sediminicola 16S ribosomal RNA gene, partial sequence	JQ349048		GenBank ENA

[Ref.: #44056]

GC-content

71.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #44056]

Culture collection no.

JCM 18205, KACC 16617

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter hankyongensis sp. nov., isolated from activated sludge and Lysobacter sediminicola sp. nov., isolated from freshwater sediment.	Siddiqi MZ, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.000699	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44056

Muhammad Zubair Siddiqi and Wan-Taek Im: Lysobacter hankyongensis sp. nov., isolated from activated sludge and Lysobacter sediminicola sp. nov., isolated from freshwater sediment. IJSEM 66: 212 - 218 2016 ( DOI 10.1099/ijsem.0.000699 , PubMed 26498466 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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