Lysobacter sediminicola (JCM 18205, KACC 16617, 7C-9)

Name: Lysobacter sediminicola (JCM 18205, KACC 16617, 7C-9)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141139

Type strain

Strain Designation 7C-9

Culture col. no. JCM 18205 KACC 16617 7C-9

NCBI tax ID(s) 1176534

Special Collections JCM Literature strains

History W.-T. Im 7C-09.

Links

Lysobacter sediminicola 7C-9 is an aerobe, non-halophilic, Gram-negative bacterium that forms circular colonies and was isolated from freshwater sediment.

Gram-negative rod-shaped colony-forming aerobe non-halophilic 16S sequence Bacteria

Name and taxonomic classification

SI-ID 131902

JCM 18205

@ref 20215

Last LPSN update 2026-02-09 11:33:49

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Lysobacter

Species Lysobacter sediminicola

Full scientific name Lysobacter sediminicola Siddiqi and Im 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
44056	negative	1.5-3.0 µm	0.4-0.6 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
44056	0.5-2 mm	yellowish	circular	2 days	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
44056	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)
44056	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
44056	positive	optimum	6.5-7.5

Physiology and metabolism

Oxygen tolerance

44056

Oxygen toleranceaerobe

Spore formation

@ref	Type of spore	Spore formation
44056	spore

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
44056	non-halophilic	NaCl	positive	optimum	0 %(w/v)
44056		NaCl		growth	0.5 %(w/v)

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
44056	16193 ChEBI	3-hydroxybenzoate	-	assimilation
44056	37054 ChEBI	3-hydroxybutyrate	-	assimilation
44056	17879 ChEBI	4-hydroxybenzoate	+	assimilation
44056	17128 ChEBI	adipate	+	assimilation
44056	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
44056		casein	-	hydrolysis
44056	17634 ChEBI	D-glucose	-	assimilation
44056	16899 ChEBI	D-mannitol	-	assimilation
44056	16024 ChEBI	D-mannose	-	assimilation
44056	16988 ChEBI	D-ribose	-	assimilation
44056	17924 ChEBI	D-sorbitol	-	assimilation
44056	27689 ChEBI	decanoate	-	assimilation
44056	16991 ChEBI	dna	-	hydrolysis
44056	4853 ChEBI	esculin	-	hydrolysis
44056	5291 ChEBI	gelatin	+	hydrolysis
44056	28087 ChEBI	glycogen	-	assimilation
44056	17240 ChEBI	itaconate	+	assimilation
44056	30849 ChEBI	L-arabinose	-	assimilation
44056	18287 ChEBI	L-fucose	-	assimilation
44056	15971 ChEBI	L-histidine	-	assimilation
44056	17203 ChEBI	L-proline	+	assimilation
44056	62345 ChEBI	L-rhamnose	-	assimilation
44056	17115 ChEBI	L-serine	-	assimilation
44056	24996 ChEBI	lactate	-	assimilation
44056	17306 ChEBI	maltose	+	assimilation
44056	28053 ChEBI	melibiose	-	assimilation
44056	17268 ChEBI	myo-inositol	-	assimilation
44056	506227 ChEBI	N-acetylglucosamine	-	assimilation
44056	17632 ChEBI	nitrate	-	reduction
44056		olive oil	-	hydrolysis
44056		potassium 2-dehydro-D-gluconate	-	assimilation
44056		potassium 5-dehydro-D-gluconate	+	assimilation
44056	32032 ChEBI	potassium gluconate	+	assimilation
44056	17272 ChEBI	propionate	-	assimilation
44056	17814 ChEBI	salicin	-	assimilation
44056	32954 ChEBI	sodium acetate	+	assimilation
44056	53258 ChEBI	sodium citrate	-	assimilation
44056	62983 ChEBI	sodium malonate	-	assimilation
44056	28017 ChEBI	starch	+	hydrolysis
44056	9300 ChEBI	suberic acid	+	assimilation
44056	17992 ChEBI	sucrose	+	assimilation
44056	16199 ChEBI	urea	+	hydrolysis
44056	31011 ChEBI	valerate	+	assimilation
44056	37166 ChEBI	xylan	-	hydrolysis

Enzymes

@ref	Value	Activity	Ec
44056	acid phosphatase	-	3.1.3.2
44056	alpha-chymotrypsin	-	3.4.21.1
44056	alpha-fucosidase	+	3.2.1.51
44056	alpha-galactosidase	+	3.2.1.22
44056	alpha-glucosidase	+	3.2.1.20
44056	beta-galactosidase	+	3.2.1.23
44056	beta-glucosidase	+	3.2.1.21
44056	catalase	-	1.11.1.6
44056	cystine arylamidase	+	3.4.11.3
44056	cytochrome oxidase	-	1.9.3.1
44056	esterase (C 4)	+
44056	esterase Lipase (C 8)	+
44056	leucine arylamidase	-	3.4.11.1
44056	lipase (C 14)	+
44056	naphthol-AS-BI-phosphohydrolase	-
44056	trypsin	-	3.4.21.4
44056	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

44056

Fatty acid	Percentage
C15:0 iso	28.6
C17:1 iso ω9c / C16:0 10-methyl	16.3
C16:0 iso	14.4
C17:0 iso	9.2
C16:1ω6c / C16:1ω7c	5.8
iso-C11:0-3-OH	4.7
C11:0 iso	4.5
C16:0	2.7
C15:0 anteiso	2.6
iso-C16:1-H	1.6
C17:0 anteiso	1.3
C15:1-H / C13:0-3-OH	1.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Freshwater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
44056	freshwater sediment	Gapcheon Stream, Daejeon City	Republic of Korea	KOR	Asia
67770	Freshwater sediment in South Korea

Taxonmaps

69479

Global distribution of 16S sequence JQ349048 (>99% sequence identity) for Lysobacter sediminicola subclade from Microbeatlas

Aquatic Samples	300
Soil Samples	112
Animal Samples	49
Plant Samples	13
Total Samples	474

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
44056	Lysobacter sediminicola 16S ribosomal RNA gene, partial sequence	JQ349048

GC content

@ref	GC-content (mol%)	Method
44056	71.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter hankyongensis sp. nov., isolated from activated sludge and Lysobacter sediminicola sp. nov., isolated from freshwater sediment.	Siddiqi MZ, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.000699	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44056	Muhammad Zubair Siddiqi and Wan-Taek Im: Lysobacter hankyongensis sp. nov., isolated from activated sludge and Lysobacter sediminicola sp. nov., isolated from freshwater sediment. IJSEM 66: 212 - 218 2016 ( DOI 10.1099/ijsem.0.000699 , PubMed 26498466 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lysobacter sediminicola (JCM 18205, KACC 16617, 7C-9)

Name and taxonomic classification