Lysobacter hankyongensis (JCM 18204, KACC 16618, KTCe-2)

Name: Lysobacter hankyongensis (JCM 18204, KACC 16618, KTCe-2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141138

Type strain

Strain Designation KTCe-2

Culture col. no. JCM 18204 KACC 16618 KTCe-2

NCBI tax ID(s) 1176535

Special Collections JCM Literature strains

History W.-T. Im KTCe-2.

Links

Lysobacter hankyongensis KTCe-2 is an aerobe, non-halophilic, Gram-negative prokaryote that forms circular colonies and was isolated from activated sludge.

Gram-negative rod-shaped colony-forming aerobe non-halophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132525

JCM 18204

@ref 20215

Last LPSN update 2026-02-09 11:33:49

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Lysobacter

Species Lysobacter hankyongensis

Full scientific name Lysobacter hankyongensis Siddiqi and Im 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
44056	negative	1.0-1.5 µm	0.3-0.4 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
44056	0.5-2 mm	dark orange	circular	2 days	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
44056	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
44056	positive	growth	10-30
44056	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
44056	positive	optimum	6.0-7.0
44056	positive	growth	6-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

44056

Oxygen toleranceaerobe

Spore formation

@ref	Type of spore	Spore formation
44056	spore

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
44056	non-halophilic	NaCl	positive	optimum	0 %(w/v)

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
44056	16193 ChEBI	3-hydroxybenzoate	+	assimilation
44056	37054 ChEBI	3-hydroxybutyrate	+	assimilation
44056	17879 ChEBI	4-hydroxybenzoate	+	assimilation
44056	17128 ChEBI	adipate	-	assimilation
44056	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
44056		casein	-	hydrolysis
44056	16899 ChEBI	D-mannitol	+	assimilation
44056	16024 ChEBI	D-mannose	-	assimilation
44056	16988 ChEBI	D-ribose	+	assimilation
44056	17924 ChEBI	D-sorbitol	+	assimilation
44056	27689 ChEBI	decanoate	-	assimilation
44056	16991 ChEBI	dna	-	hydrolysis
44056	4853 ChEBI	esculin	+	hydrolysis
44056	5291 ChEBI	gelatin	+	hydrolysis
44056	17234 ChEBI	glucose	+	assimilation
44056	28087 ChEBI	glycogen	+	assimilation
44056	17240 ChEBI	itaconate	+	assimilation
44056	30849 ChEBI	L-arabinose	+	assimilation
44056	18287 ChEBI	L-fucose	+	assimilation
44056	15971 ChEBI	L-histidine	+	assimilation
44056	17203 ChEBI	L-proline	+	assimilation
44056	62345 ChEBI	L-rhamnose	-	assimilation
44056	17115 ChEBI	L-serine	+	assimilation
44056	24996 ChEBI	lactate	+	assimilation
44056	17306 ChEBI	maltose	+	assimilation
44056	28053 ChEBI	melibiose	+	assimilation
44056	17268 ChEBI	myo-inositol	-	assimilation
44056	506227 ChEBI	N-acetylglucosamine	+	assimilation
44056	17632 ChEBI	nitrate	-	reduction
44056		olive oil	-	hydrolysis
44056		potassium 2-dehydro-D-gluconate	+	assimilation
44056		potassium 5-dehydro-D-gluconate	-	assimilation
44056	32032 ChEBI	potassium gluconate	-	assimilation
44056	17272 ChEBI	propionate	+	assimilation
44056	17814 ChEBI	salicin	+	assimilation
44056	32954 ChEBI	sodium acetate	-	assimilation
44056	53258 ChEBI	sodium citrate	+	assimilation
44056	62983 ChEBI	sodium malonate	+	assimilation
44056	28017 ChEBI	starch	+	hydrolysis
44056	9300 ChEBI	suberic acid	+	assimilation
44056	17992 ChEBI	sucrose	+	assimilation
44056	16199 ChEBI	urea	+	hydrolysis
44056	31011 ChEBI	valerate	+	assimilation
44056	37166 ChEBI	xylan	-	hydrolysis

Enzymes

@ref	Value	Activity	Ec
44056	acid phosphatase	-	3.1.3.2
44056	alpha-chymotrypsin	+	3.4.21.1
44056	alpha-fucosidase	-	3.2.1.51
44056	alpha-galactosidase	-	3.2.1.22
44056	alpha-glucosidase	-	3.2.1.20
44056	beta-glucosidase	-	3.2.1.21
44056	catalase	+	1.11.1.6
44056	cystine arylamidase	+	3.4.11.3
44056	cytochrome oxidase	-	1.9.3.1
44056	esterase (C 4)	-
44056	esterase Lipase (C 8)	-
44056	leucine arylamidase	+	3.4.11.1
44056	lipase (C 14)	-
44056	naphthol-AS-BI-phosphohydrolase	-
44056	trypsin	+	3.4.21.4
44056	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

44056

Fatty acid	Percentage
C16:1ω6c / C16:1ω7c	19
C16:0 iso	18.1
C14:0 iso	13.8
C15:0 iso	13
iso-C11:0-3-OH	7.4
C11:0 iso	5.3
C17:1 iso ω9c / C16:0 10-methyl	4.3
C14:0	3
C16:0	1.6
iso-C16:1-H	1.4
iso-C15:1-F	1.3
iso-C12:0-3-OH	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Activated sludge

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
44056	activated sludge	Daejeon City	Republic of Korea	KOR	Asia
67770	Activated sludge in South Korea

Taxonmaps

69479

Global distribution of 16S sequence JQ349049 (>99% sequence identity) for Lysobacter from Microbeatlas

Aquatic Samples	93
Soil Samples	159
Animal Samples	18
Plant Samples	10
Total Samples	280

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954314v1 assembly for Lysobacter hankyongensis JCM 18204	scaffold	GCA_039543145	1176535	39.58

16S sequences

@ref	Description	Accession	Database
44056	Lysobacter hankyongensis 16S ribosomal RNA gene, partial sequence	JQ349049

GC content

@ref	GC-content (mol%)	Method
44056	68.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ahniella affigens gen. nov., sp. nov., a gammaproteobacterium isolated from sandy soil near a stream.	Hwang WM, Ko Y, Kim JH, Kang K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002859	2018
Phylogeny	Lysobacter solanacearum sp. nov., isolated from rhizosphere of tomato.	Kim SJ, Ahn JH, Weon HY, Joa JH, Hong SB, Seok SJ, Kim JS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.001729	2017
Phylogeny	Lysobacter hankyongensis sp. nov., isolated from activated sludge and Lysobacter sediminicola sp. nov., isolated from freshwater sediment.	Siddiqi MZ, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.000699	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44056	Muhammad Zubair Siddiqi and Wan-Taek Im: Lysobacter hankyongensis sp. nov., isolated from activated sludge and Lysobacter sediminicola sp. nov., isolated from freshwater sediment. IJSEM 66: 212 - 218 2016 ( DOI 10.1099/ijsem.0.000699 , PubMed 26498466 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lysobacter hankyongensis (JCM 18204, KACC 16618, KTCe-2)

Name and taxonomic classification