Lacimicrobium alkaliphilum (CGMCC 1.12923, KCTC 42674, X13M-12)

Name: Lacimicrobium alkaliphilum (CGMCC 1.12923, KCTC 42674, X13M-12)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141137

Type strain

Strain Designation X13M-12

Culture col. no. CGMCC 1.12923 KCTC 42674 X13M-12

NCBI tax ID(s) 1526571

Special Collections KCTC Literature strains

Links

Lacimicrobium alkaliphilum X13M-12 is a facultative aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from surface water sample of a salt lake.

Gram-negative motile curved-shaped colony-forming facultative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27654

KCTC 42674

@ref 20215

Last LPSN update 2026-02-09 11:33:49

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Lacimicrobium

Species Lacimicrobium alkaliphilum

Full scientific name Lacimicrobium alkaliphilum Zhong et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
44053	negative	1.2-2.3 µm	0.5-0.8 µm	curved-shaped	polar
125438	negative					99.494
125439	negative					98.4

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
44053	2.0-3.0 mm	yellow	circular	3 days	MA agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
44053	Marine agar (MA)
44053	MB
44053	LB (Luria-Bertani) MEDIUM
44053	trypticase soy broth (TSB)

Culture temp

@ref	Growth	Type	Temperature (°C)
44053	positive	growth	4-40
44053	positive	optimum	25-30

Culture pH

@ref	Ability	Type	PH	PH range
44053	positive	optimum	8.5
44053	positive	growth	6.0-11.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
44053	facultative aerobe
125439	obligate aerobe	93.1

Spore formation

@ref	Spore formation	Confidence
125438		90.543
125439		97.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
44053	NaCl	positive	growth	0-15.0 %(w/v)
44053	NaCl	positive	optimum	3.0-5.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
44053		casein	-	hydrolysis
44053	16947 ChEBI	citrate	+	carbon source
44053	16947 ChEBI	citrate	+	energy source
44053	15824 ChEBI	D-fructose	-	carbon source
44053	15824 ChEBI	D-fructose	-	energy source
44053	12936 ChEBI	D-galactose	-	carbon source
44053	12936 ChEBI	D-galactose	-	energy source
44053	17634 ChEBI	D-glucose	+	carbon source
44053	17634 ChEBI	D-glucose	+	energy source
44053	17634 ChEBI	D-glucose	+	fermentation
44053	16024 ChEBI	D-mannose	-	carbon source
44053	16024 ChEBI	D-mannose	-	energy source
44053	17924 ChEBI	D-sorbitol	+	carbon source
44053	17924 ChEBI	D-sorbitol	+	energy source
44053	65327 ChEBI	D-xylose	-	carbon source
44053	65327 ChEBI	D-xylose	-	energy source
44053	4853 ChEBI	esculin	+	hydrolysis
44053	5291 ChEBI	gelatin	+	hydrolysis
44053	29987 ChEBI	glutamate	-	carbon source
44053	29987 ChEBI	glutamate	-	energy source
44053	15428 ChEBI	glycine	-	carbon source
44053	15428 ChEBI	glycine	-	energy source
44053	16467 ChEBI	L-arginine	-	hydrolysis
44053	17561 ChEBI	L-cysteine	-	carbon source
44053	17561 ChEBI	L-cysteine	-	energy source
44053	18019 ChEBI	L-lysine	-	carbon source
44053	18019 ChEBI	L-lysine	-	energy source
44053	17895 ChEBI	L-tyrosine	+	hydrolysis
44053	17716 ChEBI	lactose	-	carbon source
44053	17716 ChEBI	lactose	-	energy source
44053	17306 ChEBI	maltose	-	carbon source
44053	17306 ChEBI	maltose	-	energy source
44053	17790 ChEBI	methanol	+	carbon source
44053	17790 ChEBI	methanol	+	energy source
44053	17632 ChEBI	nitrate	+	reduction
44053	15361 ChEBI	pyruvate	+	carbon source
44053	15361 ChEBI	pyruvate	+	energy source
44053	28017 ChEBI	starch	-	hydrolysis
44053	30031 ChEBI	succinate	-	carbon source
44053	30031 ChEBI	succinate	-	energy source
44053	17992 ChEBI	sucrose	+	carbon source
44053	17992 ChEBI	sucrose	+	energy source
44053	27082 ChEBI	trehalose	+	carbon source
44053	27082 ChEBI	trehalose	+	energy source
44053	53424 ChEBI	tween 20	+	hydrolysis
44053	53423 ChEBI	tween 40	+	hydrolysis
44053	53425 ChEBI	tween 60	+	hydrolysis
44053	53426 ChEBI	tween 80	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
44053	28971	ampicillin	10 µg (disc)
44053	17698	chloramphenicol	30 µg (disc)
44053	3732	clarithromycin	15 µg (disc)
44053	3745	clindamycin		2 µg (disc)
44053	48923	erythromycin	15 µg (disc)
44053	17833	gentamicin	10 µg (disc)
44053	6104	kanamycin		30 µg (disc)
44053	100246	norfloxacin	10 µg (disc)
44053	17076	streptomycin	10 µg (disc)
44053	9332	sulfamethoxazole	300 µg (disc)
44053	27902	tetracycline		30 µg (disc)
44053	28001	vancomycin		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
44053	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
44053	acid phosphatase	+	3.1.3.2
44053	alkaline phosphatase	+	3.1.3.1
44053	alpha-chymotrypsin	+	3.4.21.1
44053	alpha-fucosidase	-	3.2.1.51
44053	alpha-galactosidase	-	3.2.1.22
44053	alpha-glucosidase	-	3.2.1.20
44053	alpha-mannosidase	-	3.2.1.24
44053	beta-galactosidase	-	3.2.1.23
44053	beta-glucosidase	-	3.2.1.21
44053	beta-glucuronidase	-	3.2.1.31
44053	catalase	+	1.11.1.6
44053	cystine arylamidase	-	3.4.11.3
44053	cytochrome oxidase	+	1.9.3.1
44053	esterase (C 4)	+
44053	esterase Lipase (C 8)	+
44053	leucine arylamidase	+	3.4.11.1
44053	lipase (C 14)	-
44053	N-acetyl-beta-glucosaminidase	+	3.2.1.52
44053	naphthol-AS-BI-phosphohydrolase	+
44053	trypsin	-	3.4.21.4
44053	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	ethanol fermentation	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	teichoic acid biosynthesis	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	octane oxidation	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	biotin biosynthesis	100	4 of 4
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	palmitate biosynthesis	100	22 of 22
66794	glutathione metabolism	92.86	13 of 14
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	starch degradation	90	9 of 10
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	pyrimidine metabolism	86.67	39 of 45
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	photosynthesis	85.71	12 of 14
66794	NAD metabolism	83.33	15 of 18
66794	alanine metabolism	82.76	24 of 29
66794	d-xylose degradation	81.82	9 of 11
66794	purine metabolism	80.85	76 of 94
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	tryptophan metabolism	78.95	30 of 38
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	tyrosine metabolism	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	phenylalanine metabolism	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	lactate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	vitamin B6 metabolism	72.73	8 of 11
66794	citric acid cycle	71.43	10 of 14
66794	arginine metabolism	70.83	17 of 24
66794	glycolysis	70.59	12 of 17
66794	methionine metabolism	69.23	18 of 26
66794	lipid metabolism	67.74	21 of 31
66794	methane metabolism	66.67	2 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	lysine metabolism	66.67	28 of 42
66794	IAA biosynthesis	66.67	2 of 3
66794	sulfoquinovose degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	histidine metabolism	65.52	19 of 29
66794	non-pathway related	63.16	24 of 38
66794	ketogluconate metabolism	62.5	5 of 8
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	urea cycle	61.54	8 of 13
66794	polyamine pathway	60.87	14 of 23
66794	degradation of sugar acids	60	15 of 25
66794	myo-inositol biosynthesis	60	6 of 10
66794	creatinine degradation	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	propanol degradation	57.14	4 of 7
66794	degradation of pentoses	57.14	16 of 28
66794	phenol degradation	55	11 of 20
66794	pantothenate biosynthesis	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	suberin monomers biosynthesis	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	isoprenoid biosynthesis	50	13 of 26
66794	catecholamine biosynthesis	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	sulfate reduction	46.15	6 of 13
66794	oxidative phosphorylation	46.15	42 of 91
66794	aspartate and asparagine metabolism	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	degradation of sugar alcohols	43.75	7 of 16
66794	lipoate biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	carnitine metabolism	37.5	3 of 8
66794	metabolism of disaccharids	36.36	4 of 11
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	degradation of hexoses	33.33	6 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	acetoin degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	ascorbate metabolism	27.27	6 of 22
66794	vitamin E metabolism	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	allantoin degradation	22.22	2 of 9
66794	4-hydroxymandelate degradation	22.22	2 of 9

Fatty acid profile

Metadata FA analysis

@ref

44053

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	21
C16:0	16.5
C18:1ω6c / C18:1ω7c	16.1
C12:0 3OH	9.6
C17:1ω8c	6
10-methyl C19:0	4.7
C17:0-cyclo	3.8
C16:0-3-OH	3.1
C12:1 3OH	2
C17:0	1.8
C14:0	1.8
C12:0	1.5
C11:0-3-OH	1.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Condition	#Saline	-
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Surface water

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture temperature
44053	surface water sample of a salt lake	Lake Xiaochaidan, Qaidam basin, Qinghai Province	China	CHN	Asia	37.4944	95.5239 37.4944/95.5239	marine agar 2216 (MA, Difco)	30

Taxonmaps

69479

Global distribution of 16S sequence KJ782426 (>99% sequence identity) for Lacimicrobium alkaliphilum from Microbeatlas

Aquatic Samples	2054
Soil Samples	179
Animal Samples	1411
Plant Samples	135
Total Samples	3779

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM259189v1 assembly for Lacimicrobium alkaliphilum X13M-12	contig	GCA_002591895	1526571.4	2832081228	1526571	69.55
66792	ASM1464013v1 assembly for Lacimicrobium alkaliphilum CGMCC 1.12923	scaffold	GCA_014640135	1526571.11	8062951069	1526571	69

16S sequences

@ref	Description	Accession	Database
44053	Lacimicrobium alkaliphilum strain X13M-12 16S ribosomal RNA gene, partial sequence	KJ782426

GC content

@ref	GC-content (mol%)	Method
44053	49	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lacimicrobium alkaliphilum CGMCC 1.12923
NCBI: GCA_014640135

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.80	no
125439	motility	BacteriaNetⓘ	yes	70.70	no
125439	gram_stain	BacteriaNetⓘ	negative	98.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lacimicrobium alkaliphilum CGMCC 1.12923
NCBI: GCA_014640135.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.49	yes
125438	anaerobic	anaerobicⓘ	no	94.20	yes
125438	aerobic	aerobicⓘ	yes	71.19	no
125438	spore-forming	spore-formingⓘ	no	90.54	no
125438	thermophilic	thermophileⓘ	no	96.00	no
125438	flagellated	motile2+ⓘ	yes	88.80	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saliniradius amylolyticus gen. nov., sp. nov., isolated from solar saltern sediment.	Kang H, Cha I, Kim H, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.003748	2020
Phylogeny	Lacimicrobium alkaliphilum gen. nov., sp. nov., a member of the family Alteromonadaceae isolated from a salt lake.	Zhong ZP, Liu Y, Wang F, Zhou YG, Liu HC, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijsem.0.000735	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44053	Zhi-Ping Zhong, Ying Liu, Fang Wang, Yu-Guang Zhou, Hong-Can Liu and Zhi-Pei Liu: Lacimicrobium alkaliphilum gen. nov., sp. nov., a member of the family Alteromonadaceae isolated from a salt lake. IJSEM 66: 422 - 429 2016 ( DOI 10.1099/ijsem.0.000735 , PubMed 26537772 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Lacimicrobium alkaliphilum (CGMCC 1.12923, KCTC 42674, X13M-12)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Pathway annotation

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002591895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media