Flavobacterium collinsense (LMG 28257, CCTCC AB 2014004, 4-T-2)

Name: Flavobacterium collinsense (LMG 28257, CCTCC AB 2014004, 4-T-2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141133

Type strain

Strain Designation 4-T-2

Culture col. no. LMG 28257 CCTCC AB 2014004 4-T-2

NCBI tax ID(s) 1535303

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Flavobacterium collinsense 4-T-2 is an aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from till sample of a glacier front.

Gram-negative rod-shaped colony-forming aerobe 16S sequence

Name and taxonomic classification

SI-ID 393804

LMG 28257

@ref 20215

Last LPSN update 2025-12-16 10:03:46

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium collinsense

Full scientific name Flavobacterium collinsense Zhang et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
44048	negative	0.5-1.0 µm	0.2-0.3 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
44048	0.5-1.0 mm	yellow	circular	3 days	R2A agar

Pigmentation

@ref	Production	Name
44048		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
44048	Nutrient agar (NA)
44048	Reasoner's 2A agar (R2A)
44048	TSB agar
44048	LB (Luria-Bertani) MEDIUM
44048	MB

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
44048	positive	growth	4-28
44048	positive	optimum	18-20	psychrophilic

Culture pH

@ref	Ability	Type	PH	PH range
44048	positive	optimum	9
44048	positive	growth	7.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

44048

Oxygen toleranceaerobe

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
44048		NaCl	positive	growth	0-1.0 %(w/v)
44048	non-halophilic	NaCl	positive	optimum	0 %(w/v)

Observation

44048

Observationsurrounded by a multilayer capsule

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
44048	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
44048		casein	+	hydrolysis
44048	16988 ChEBI	D-ribose	+	carbon source
44048	4853 ChEBI	esculin	+	builds acid from
44048	28087 ChEBI	glycogen	+	builds acid from
44048	16235 ChEBI	guanine	-	hydrolysis
44048	17368 ChEBI	hypoxanthine	-	hydrolysis
44048	17716 ChEBI	lactose	+	builds acid from
44048	17306 ChEBI	maltose	+	builds acid from
44048		potassium 5-dehydro-D-gluconate	+	carbon source
44048	28017 ChEBI	starch	-	hydrolysis
44048	28017 ChEBI	starch	+	builds acid from
44048	53424 ChEBI	tween 20	+	hydrolysis
44048	53423 ChEBI	tween 40	+	hydrolysis
44048	53425 ChEBI	tween 60	+	hydrolysis
44048	53426 ChEBI	tween 80	+	hydrolysis
44048	15318 ChEBI	xanthine	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Is sensitive	Sensitivity conc.
44048	28971	ampicillin		10 µg (disc)
44048	6104	kanamycin		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
44048	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
44048	acid phosphatase	+	3.1.3.2
44048	alkaline phosphatase	+	3.1.3.1
44048	alpha-chymotrypsin	-	3.4.21.1
44048	alpha-galactosidase	-	3.2.1.22
44048	alpha-glucosidase	+/-	3.2.1.20
44048	alpha-mannosidase	-	3.2.1.24
44048	beta-D-fucosidase	-	3.2.1.38
44048	beta-galactosidase	+/-	3.2.1.23
44048	beta-galactosidase	-	3.2.1.23
44048	beta-glucosidase	-	3.2.1.21
44048	beta-glucuronidase	-	3.2.1.31
44048	catalase	-	1.11.1.6
44048	cystine arylamidase	+/-	3.4.11.3
44048	cytochrome oxidase	+	1.9.3.1
44048	esterase (C 4)	+/-
44048	esterase Lipase (C 8)	+
44048	gelatinase	+
44048	leucine arylamidase	+	3.4.11.1
44048	lipase (C 14)	-
44048	N-acetyl-beta-glucosaminidase	-	3.2.1.52
44048	naphthol-AS-BI-phosphohydrolase	+
44048	trypsin	-	3.4.21.4
44048	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

44048

Fatty acid	Percentage
C15:0 iso	14.4
C16:0 iso	13.9
iso-C15:1-G	10.7
C17:1ω9c / C16:0-10-methyl	10
iso-C16:0-3-OH	8.8
iso-C16:1-H	8.4
C15:0 anteiso	5.9
iso-C15:0-3-OH	5.6
C17:0 2OH	2.9
iso-C17:0-3-OH	2.4
C18:1ω5c	2.2
C16:1ω7c / C16:1ω6c	2.1
anteiso-C15:1-A	1.9
C15:1ω6c	1.8
C14:0 iso	1.5
C17:1 anteiso ω9c	1.4
C17:1ω8c	1.1
iso-C14:0-3-OH	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Climate	#Cold	#Polar
#Environmental	#Terrestrial	#Glacier

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture temperature
44048	till sample of a glacier front	Collins Glacier, King George Island	Antarctica	ATA	Australia and Oceania	-62.1823	-58.8667 -62.1823/-58.8667	R2A	4

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
44048	Flavobacterium collinsense 16S ribosomal RNA gene, partial sequence	KM288594

GC content

@ref	GC-content (mol%)	Method
44048	36.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium knui sp. nov., a novel member of the family Flavobacteriaceae.	Kim SY, Ten LN, Lee SY, Kim SH, Kang IK, Jung HY	Antonie Van Leeuwenhoek	10.1007/s10482-018-1128-3	2018
Phylogeny	Flavobacterium collinsense sp. nov., isolated from a till sample of an Antarctic glacier.	Zhang Y, Jiang F, Chang X, Qiu X, Ren L, Qu Z, Deng S, Da X, Fang C, Peng F	Int J Syst Evol Microbiol	10.1099/ijsem.0.000688	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44048	Yumin Zhang, Fan Jiang, Xulu Chang, Xia Qiu, Lvzhi Ren, Zhihao Qu, Sangsang Deng, Xuyang Da, Chengxiang Fang and Fang Peng: Flavobacterium collinsense sp. nov., isolated from a till sample of an Antarctic glacier. IJSEM 66: 172 - 177 2016 ( DOI 10.1099/ijsem.0.000688 , PubMed 26475320 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium collinsense (LMG 28257, CCTCC AB 2014004, 4-T-2)

Name and taxonomic classification