Name: Devosia humi THG-MM1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141130

Type strain:

Species: Devosia humi

Strain Designation: THG-MM1

Culture col. no.: KACC 18281, CCTCC AB 2015121

NCBI tax ID(s): 1591105 (species)

Section

Devosia humi THG-MM1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from soil of Korean pine garden.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Devosiaceae*
	Genus	*Devosia*
	Species	**Devosia humi**
	Full Scientific Name (LPSN)	Devosia humi Du et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #44042]	Gram stain	negative

[Ref.: #44042]	Cell length	1.3-3.0 µm

[Ref.: #44042]	Cell width	0.41-0.67 µm

[Ref.: #44042]	Cell shape	rod-shaped

[Ref.: #44042]	Motility	no

[Ref.: #44042]	Colony size	0.5-2.0 mm
[Ref.: #44042]	Colony color	pinkish-white
[Ref.: #44042]	Colony shape	circular
[Ref.: #44042]	Incubation period	5 days
[Ref.: #44042]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

TSA agar

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #44042]			growth	18-30 °C
[Ref.: #44042]			optimum	28 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #44042]			optimum	6.5
[Ref.: #44042]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44042]		NaCl		growth	0-1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44042]	adipate ChEBI	-	carbon source
[Ref.: #44042]	D-mannitol ChEBI	-	carbon source
[Ref.: #44042]	D-mannose ChEBI	-	carbon source
[Ref.: #44042]	decanoate ChEBI	-	carbon source
[Ref.: #44042]	dna ChEBI	-	hydrolysis
[Ref.: #44042]	gelatin ChEBI	-	hydrolysis
[Ref.: #44042]	glucose ChEBI	-	carbon source
[Ref.: #44042]	L-arabinose ChEBI	-	carbon source
[Ref.: #44042]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #44042]	malate ChEBI	-	carbon source
[Ref.: #44042]	maltose ChEBI	-	carbon source
[Ref.: #44042]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #44042]	nitrate ChEBI	-	reduction
[Ref.: #44042]	phenylacetate ChEBI	-	carbon source
[Ref.: #44042]	potassium gluconate ChEBI	-	carbon source
[Ref.: #44042]	sodium citrate ChEBI	-	carbon source
[Ref.: #44042]	starch ChEBI	-	hydrolysis
[Ref.: #44042]	tween 20 ChEBI	-	hydrolysis
[Ref.: #44042]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #44042]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #44042]	acid phosphatase	+/-	3.1.3.2
[Ref.: #44042]	alkaline phosphatase	-	3.1.3.1
[Ref.: #44042]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #44042]	alpha-fucosidase	-	3.2.1.51
[Ref.: #44042]	alpha-galactosidase	-	3.2.1.22
[Ref.: #44042]	alpha-glucosidase	-	3.2.1.20
[Ref.: #44042]	alpha-mannosidase	+	3.2.1.24
[Ref.: #44042]	arginine dihydrolase	-	3.5.3.6
[Ref.: #44042]	beta-galactosidase	+	3.2.1.23
[Ref.: #44042]	beta-glucosidase	+/-	3.2.1.21
[Ref.: #44042]	beta-glucuronidase	-	3.2.1.31
[Ref.: #44042]	catalase	+	1.11.1.6
[Ref.: #44042]	cystine arylamidase	-	3.4.11.3
[Ref.: #44042]	cytochrome oxidase	+	1.9.3.1
[Ref.: #44042]	esterase (C 4)	+
[Ref.: #44042]	esterase Lipase (C 8)	+
[Ref.: #44042]	leucine arylamidase	+	3.4.11.1
[Ref.: #44042]	lipase (C 14)	+/-
[Ref.: #44042]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #44042]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #44042]	trypsin	-	3.4.21.4
[Ref.: #44042]	urease	-	3.5.1.5
[Ref.: #44042]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44042]

Fatty acid	Percentage
C16:0	27.8
C18:1ω7c / C18:1ω6c	12.8
C18:0	11
iso-C11:0-3-OH	9.9
C17:0 iso	9.8
C10:0 3OH	8.4
11-methyl-C18:1ω7c	8.1
C18:3ω6c(6,9,12)	2.2
C18:1ω9c	1.6
C19:0-cyclo-ω8c	1.6
C15:0 anteiso	1.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44042]	Sample type/isolated from	soil of Korean pine (Pinus koraiensis) garden
[Ref.: #44042]	Geographic location (country and/or sea, region)	Kyung Hee University, Yongin City, Gyeonggi-Do
[Ref.: #44042]	Country	Republic of Korea
[Ref.: #44042]	Country ISO 3 Code	KOR
[Ref.: #44042]	Continent	Asia
[Ref.: #44042]	Geographic location	37.2408°/127.1770°
[Ref.: #44042]	Enrichment culture	R2A agar
[Ref.: #44042]	Enrichment culture duration	5 days
[Ref.: #44042]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Garden
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #44042]	16S rRNA gene sequence	KM598259		GenBank

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GC-content

63.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

KACC 18281, CCTCC AB 2015121

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Devosia humi sp. nov., isolated from soil of a Korean pine (Pinus koraiensis) garden.	Du J, Kook M, Akter S, Singh H, Won K, Ngo HTT, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000724	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44042

Juan Du, MooChang Kook, Shahina Akter, Hina Singh, KyungHwa Won, Hien T. T. Ngo and Tae-Hoo Yi: Devosia humi sp. nov., isolated from soil of a Korean pine (Pinus koraiensis) garden. IJSEM 66: 341 - 346 2016 ( DOI 10.1099/ijsem.0.000724 , PubMed 26514816 )

* These data were automatically processed and therefore are not curated

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