Name: Mesorhizobium kowhaii ICMP 19512
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141122

Type strain:

Species: Mesorhizobium kowhaii

Culture col. no.: ICMP 19512, LMG 28222, HAMBI 3603

NCBI tax ID(s): 1300272 (species)

SI-ID 393609

LMG 28222, HAMBI 3603, ICMP 19512

Section

Mesorhizobium kowhaii ICMP 19512 is a Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from root nodules of Sophora microphylla from an alluvial greywacke river terrace.

colony-forming
Gram-negative
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Mesorhizobium*
	Species	**Mesorhizobium kowhaii**
	Full Scientific Name (LPSN)	Mesorhizobium kowhaii De Meyer et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #44033]	Gram stain	negative

[Ref.: #44033]	Cell length	1.5-2.0 µm

[Ref.: #44033]	Cell width	1 µm

[Ref.: #44033]	Cell shape	rod-shaped

[Ref.: #44033]	Colony size	0.7-1.2 mm
[Ref.: #44033]	Colony color	cream
[Ref.: #44033]	Colony shape	circular
[Ref.: #44033]	Cultivation medium used	YMA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #44033]

Culture medium

YMA

[Ref.: #44033]

Culture medium growth

[Ref.: #44033]

Culture medium

YMB

[Ref.: #44033]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #44033]		growth	15-30 °C
[Ref.: #44033]	no	growth	4 °C
[Ref.: #44033]	no	growth	7 °C
[Ref.: #44033]	no	growth	37 °C
[Ref.: #44033]		growth	28 °C

[Ref.: #44033]	Temperature range	psychrophilic
[Ref.: #44033]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #44033]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44033]		NaCl		growth	1-8	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44033]	1 % sodium lactate	+	respiration
[Ref.: #44033]	2-hydroxybutyrate ChEBI	-	respiration
[Ref.: #44033]	2-oxobutanoate ChEBI	-	respiration
[Ref.: #44033]	2-oxoglutarate ChEBI	+/-	respiration
[Ref.: #44033]	3-hydroxybutyrate ChEBI	+	respiration
[Ref.: #44033]	3-O-methyl-D-glucose ChEBI	+/-	respiration
[Ref.: #44033]	4-hydroxyphenylacetic acid ChEBI	+	respiration
[Ref.: #44033]	acetate ChEBI	+	respiration
[Ref.: #44033]	acetoacetate ChEBI	+	respiration
[Ref.: #44033]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #44033]	alpha-lactose ChEBI	+	respiration
[Ref.: #44033]	aztreonam ChEBI	+	respiration
[Ref.: #44033]	bromosuccinate ChEBI	-	respiration
[Ref.: #44033]	cellobiose ChEBI	+	respiration
[Ref.: #44033]	citrate ChEBI	-	respiration
[Ref.: #44033]	citrate ChEBI	+	assimilation
[Ref.: #44033]	D-arabitol ChEBI	+	respiration
[Ref.: #44033]	D-aspartate ChEBI	-	respiration
[Ref.: #44033]	D-fructose ChEBI	+	respiration
[Ref.: #44033]	D-fructose 6-phosphate ChEBI	+/-	respiration
[Ref.: #44033]	D-fucose ChEBI	+	respiration
[Ref.: #44033]	D-galactose ChEBI	+	respiration
[Ref.: #44033]	D-galacturonic acid ChEBI	+/-	respiration
[Ref.: #44033]	D-gluconate ChEBI	+/-	respiration
[Ref.: #44033]	D-glucose ChEBI	+	assimilation
[Ref.: #44033]	D-glucose 6-phosphate ChEBI	+/-	respiration
[Ref.: #44033]	D-glucuronate ChEBI	+/-	respiration
[Ref.: #44033]	D-malate ChEBI	+/-	respiration
[Ref.: #44033]	D-mannitol ChEBI	+	respiration
[Ref.: #44033]	D-mannitol ChEBI	+/-	assimilation
[Ref.: #44033]	D-mannose ChEBI	+	assimilation
[Ref.: #44033]	D-mannose ChEBI	+	respiration
[Ref.: #44033]	D-saccharate ChEBI	+/-	respiration
[Ref.: #44033]	D-serine ChEBI	-	respiration
[Ref.: #44033]	D-sorbitol ChEBI	+	respiration
[Ref.: #44033]	D-trehalose ChEBI	+	respiration
[Ref.: #44033]	dextrin ChEBI	+/-	respiration
[Ref.: #44033]	formate ChEBI	+/-	respiration
[Ref.: #44033]	fusidate ChEBI	+/-	respiration
[Ref.: #44033]	galactarate ChEBI	-	respiration
[Ref.: #44033]	gamma-aminobutyric acid ChEBI	+	respiration
[Ref.: #44033]	gelatin ChEBI	-	respiration
[Ref.: #44033]	gentiobiose ChEBI	+	respiration
[Ref.: #44033]	glucuronamide ChEBI	+/-	respiration
[Ref.: #44033]	glycerol ChEBI	+	respiration
[Ref.: #44033]	glycine-proline ChEBI	+	respiration
[Ref.: #44033]	guanidinium chloride ChEBI	-	respiration
[Ref.: #44033]	inosine ChEBI	+/-	respiration
[Ref.: #44033]	L-alanine ChEBI	-	respiration
[Ref.: #44033]	L-arabinose ChEBI	+	assimilation
[Ref.: #44033]	L-arginine ChEBI	+/-	respiration
[Ref.: #44033]	L-aspartate ChEBI	+	respiration
[Ref.: #44033]	L-fucose ChEBI	+	respiration
[Ref.: #44033]	L-galactonic acid gamma-lactone ChEBI	-	respiration
[Ref.: #44033]	L-glutamate ChEBI	+/-	respiration
[Ref.: #44033]	L-histidine ChEBI	-	respiration
[Ref.: #44033]	L-malate ChEBI	+	respiration
[Ref.: #44033]	L-pyroglutamic acid ChEBI	+/-	respiration
[Ref.: #44033]	L-rhamnose ChEBI	+	respiration
[Ref.: #44033]	L-serine ChEBI	-	respiration
[Ref.: #44033]	lactate ChEBI	+	respiration
[Ref.: #44033]	lincomycin ChEBI	+	respiration
[Ref.: #44033]	lithium chloride ChEBI	+/-	respiration
[Ref.: #44033]	malate ChEBI	+	assimilation
[Ref.: #44033]	maltose ChEBI	+	assimilation
[Ref.: #44033]	maltose ChEBI	+	respiration
[Ref.: #44033]	melibiose ChEBI	+	respiration
[Ref.: #44033]	methyl (R)-lactate ChEBI	+/-	respiration
[Ref.: #44033]	methyl D-glucoside ChEBI	+/-	respiration
[Ref.: #44033]	methyl pyruvate ChEBI	-	respiration
[Ref.: #44033]	minocycline ChEBI	+/-	respiration
[Ref.: #44033]	myo-inositol ChEBI	+	respiration
[Ref.: #44033]	N-acetyl-beta-D-mannosamine ChEBI	+/-	respiration
[Ref.: #44033]	N-acetylgalactosamine ChEBI	+	respiration
[Ref.: #44033]	N-acetylglucosamine ChEBI	+	respiration
[Ref.: #44033]	n-acetylneuraminate ChEBI	-	respiration
[Ref.: #44033]	nalidixic acid ChEBI	+	respiration
[Ref.: #44033]	niaproof ChEBI	-	respiration
[Ref.: #44033]	pectin ChEBI	-	respiration
[Ref.: #44033]	potassium tellurite ChEBI	+/-	respiration
[Ref.: #44033]	propionate ChEBI	+/-	respiration
[Ref.: #44033]	quinate ChEBI	+/-	respiration
[Ref.: #44033]	raffinose ChEBI	-	respiration
[Ref.: #44033]	rifamycin sv ChEBI	+	respiration
[Ref.: #44033]	salicin ChEBI	+/-	respiration
[Ref.: #44033]	sodium bromate ChEBI	-	respiration
[Ref.: #44033]	sodium butyrate ChEBI	+/-	respiration
[Ref.: #44033]	stachyose ChEBI	-	respiration
[Ref.: #44033]	sucrose ChEBI	+	respiration
[Ref.: #44033]	tetrazolium blue ChEBI	+/-	respiration
[Ref.: #44033]	tetrazolium violet ChEBI	+/-	respiration
[Ref.: #44033]	troleandomycin ChEBI	-	respiration
[Ref.: #44033]	turanose ChEBI	-	respiration
[Ref.: #44033]	tween 40 ChEBI	+/-	respiration
[Ref.: #44033]	vancomycin ChEBI	+/-	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #44033]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #44033]	chloramphenicol ChEBI				yes	15	µg (disc)
[Ref.: #44033]	erythromycin ChEBI				yes	15	µg (disc)
[Ref.: #44033]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #44033]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #44033]	streptomycin ChEBI	yes	25	µg (disc)

	Enzyme	Enzyme activity	EC number
[Ref.: #44033]	arginine dihydrolase	+	3.5.3.6
[Ref.: #44033]	catalase	-	1.11.1.6
[Ref.: #44033]	cytochrome oxidase	+	1.9.3.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44033]

Fatty acid	Percentage
C18:1ω7c	35.7
C19:0cycloω8c	17.9
C16:0	17
11-methyl-C18:1ω7c	12.2
C17:0 iso	5.2
C18:0	3.2
C17:0cyclo	1.7
C16:1ω7c / C15:0-iso-2-OH	1.5
10-methyl C19:0	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44033]	Sample type/isolated from	root nodules of Sophora microphylla from an alluvial greywacke river terrace
[Ref.: #44033]	Geographic location (country and/or sea, region)	upper Rakaia River, Canterbury
[Ref.: #44033]	Country	New Zealand
[Ref.: #44033]	Country ISO 3 Code	NZL
[Ref.: #44033]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC237394 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	5652
Soil Samples	18576
Animal Samples	4689
Plant Samples	1771
Total Samples	30688

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #44033]	16S rRNA gene sequence	KC237394		GenBank

[Ref.: #44033]

GC-content

62.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #44033]

Culture collection no.

ICMP 19512, LMG 28222, HAMBI 3603

[Ref.: #96862]

SI-ID 393609

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesorhizobium calcicola sp. nov., Mesorhizobium waitakense sp. nov., Mesorhizobium sophorae sp. nov., Mesorhizobium newzealandense sp. nov. and Mesorhizobium kowhaii sp. nov. isolated from Sophora root nodules.	De Meyer SE, Tan HW, Andrews M, Heenan PB, Willems A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000796	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44033

Soe E. De Meyer, Heng Wee Tan, Mitchell Andrews, Peter B. Heenan and Anne Willems: Mesorhizobium calcicola sp. nov., Mesorhizobium waitakense sp. nov., Mesorhizobium sophorae sp. nov., Mesorhizobium newzealandense sp. nov. and Mesorhizobium kowhaii sp. nov. isolated from Sophora root nodules. IJSEM 66: 786 - 795 2016 ( DOI 10.1099/ijsem.0.000796 , PubMed 26610329 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96862

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID393609.1 )

* These data were automatically processed and therefore are not curated

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