Name: Roseivirga thermotolerans A4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141117

Type strain:

Species: Roseivirga thermotolerans

Strain Designation: A4

Culture col. no.: KCTC 42507, CGMCC 1.15111

NCBI tax ID(s): 1758176 (species)

Section

Roseivirga thermotolerans A4 is an aerobe, chemoorganotroph, Gram-negative bacterium that forms circular colonies and was isolated from aquatic sample from a culture pond of a marine cyanobacterium Plectonema sp..

colony-forming
Gram-negative
motile
rod-shaped
aerobe
chemoorganotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Roseivirgaceae*
	Genus	*Roseivirga*
	Species	**Roseivirga thermotolerans**
	Full Scientific Name (LPSN)	Roseivirga thermotolerans (Tang et al. 2016) García-López et al. 2020

Synonym

Fabivirga thermotolerans

Information on morphological and physiological properties Morphology

[Ref.: #44028]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #44028]	Cell length	2.0-9.0 µm

[Ref.: #44028]	Cell width	0.4-1.0 µm

[Ref.: #44028]	Cell shape	rod-shaped

[Ref.: #44028]	Motility	yes

[Ref.: #44028]	Flagellum arrangement	gliding

[Ref.: #44028]	Colony color	pink or red
[Ref.: #44028]	Colony shape	circular
[Ref.: #44028]	Cultivation medium used	MA agar

[Ref.: #44028]	Pigment production	no
[Ref.: #44028]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #44028]

Culture medium

Marine agar (MA)

[Ref.: #44028]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #44028]			growth	25-50 °C
[Ref.: #44028]			optimum	30 °C

[Ref.: #44028]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #44028]			optimum	7.5-8.0
[Ref.: #44028]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44028]

Oxygen tolerance

aerobe

[Ref.: #44028]

Nutrition type

chemoorganotroph

[Ref.: #44028]	Type of spore	spore
[Ref.: #44028]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

[Ref.: #44028]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44028]		NaCl		growth	0-14	%(w/v)
[Ref.: #44028]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44028]	adipate ChEBI	+	assimilation
[Ref.: #44028]	casein	+	hydrolysis
[Ref.: #44028]	chitin ChEBI	-	hydrolysis
[Ref.: #44028]	D-glucose ChEBI	+	assimilation
[Ref.: #44028]	D-mannitol ChEBI	+	assimilation
[Ref.: #44028]	D-mannose ChEBI	+	assimilation
[Ref.: #44028]	D-xylose ChEBI	-	assimilation
[Ref.: #44028]	decanoate ChEBI	-	assimilation
[Ref.: #44028]	gelatin ChEBI	+	hydrolysis
[Ref.: #44028]	glutamate ChEBI	+	assimilation
[Ref.: #44028]	glycine ChEBI	-	assimilation
[Ref.: #44028]	L-arabinose ChEBI	+	assimilation
[Ref.: #44028]	L-arginine ChEBI	+	assimilation
[Ref.: #44028]	L-histidine ChEBI	-	assimilation
[Ref.: #44028]	L-proline ChEBI	+	assimilation
[Ref.: #44028]	L-tryptophan ChEBI	+	assimilation
[Ref.: #44028]	L-tyrosine ChEBI	-	assimilation
[Ref.: #44028]	lactose ChEBI	-	assimilation
[Ref.: #44028]	malate ChEBI	+	assimilation
[Ref.: #44028]	maleic acid ChEBI	-	assimilation
[Ref.: #44028]	maltose ChEBI	+	assimilation
[Ref.: #44028]	myo-inositol ChEBI	+	assimilation
[Ref.: #44028]	nitrate ChEBI	+	reduction
[Ref.: #44028]	phenylacetate ChEBI	+	assimilation
[Ref.: #44028]	potassium gluconate ChEBI	+	assimilation
[Ref.: #44028]	pyruvate ChEBI	-	assimilation
[Ref.: #44028]	sodium citrate ChEBI	-	assimilation
[Ref.: #44028]	starch ChEBI	+	hydrolysis
[Ref.: #44028]	sucrose ChEBI	+	assimilation
[Ref.: #44028]	trehalose ChEBI	+	assimilation
[Ref.: #44028]	tween 20 ChEBI	+	hydrolysis
[Ref.: #44028]	tween 40 ChEBI	-	hydrolysis
[Ref.: #44028]	tween 80 ChEBI	-	hydrolysis
[Ref.: #44028]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #44028]		hydrogen sulfide ChEBI	no
[Ref.: #44028]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #44028]	arginine dihydrolase	-	3.5.3.6
[Ref.: #44028]	beta-galactosidase	+	3.2.1.23
[Ref.: #44028]	beta-glucosidase	+	3.2.1.21
[Ref.: #44028]	catalase	+	1.11.1.6
[Ref.: #44028]	cytochrome oxidase	+	1.9.3.1
[Ref.: #44028]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44028]	Sample type/isolated from	aquatic sample from a culture pond of a marine cyanobacterium Plectonema sp.
[Ref.: #44028]	Sampling date	2014-12-25
[Ref.: #44028]	Geographic location (country and/or sea, region)	Guangzhou
[Ref.: #44028]	Country	China
[Ref.: #44028]	Country ISO 3 Code	CHN
[Ref.: #44028]	Continent	Asia
[Ref.: #44028]	Enrichment culture	marine agar 2216 (MA, Difco)
[Ref.: #44028]	Enrichment culture duration	10 days
[Ref.: #44028]	Enrichment culture temperature	25 ̊C
[Ref.: #44028]	Isolation/enrichment procedure	Further puried by streaking three times on new MA plates.
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Pond (small)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT229616 (>99% sequence identity) for Roseivirga thermotolerans subclade from Microbeatlas

Aquatic Samples	899
Soil Samples	15
Animal Samples	18
Plant Samples	2
Total Samples	934

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #44028]	16S rRNA gene sequence	KT229616		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Roseivirga thermotolerans CGMCC 1.15111	GCA_014653175	scaffold	GenBank	1758176 tax ID	*
[Ref.: #66792]	Roseivirga thermotolerans strain CGMCC 1.15111	1758176.3	wgs	PATRIC	1758176 tax ID	*

[Ref.: #44028]

GC-content

40.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Roseivirga thermotolerans CGMCC 1.15111 NCBI: GCA_014653175.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Roseivirga thermotolerans CGMCC 1.15111 NCBI: GCA_014653175.1
[Ref.: #69480]	motile	no	90.69	no
[Ref.: #69480]	flagellated	no	97.61	yes
[Ref.: #69480]	gram-positive	no	97.744	yes
[Ref.: #69480]	anaerobic	no	98.44	yes
[Ref.: #69480]	aerobic	yes	88.602	yes
[Ref.: #69480]	halophile	no	86.389	yes
[Ref.: #69480]	spore-forming	no	95.637	yes
[Ref.: #69480]	thermophile	no	96.685	yes
[Ref.: #69480]	glucose-util	yes	88.304	yes
[Ref.: #69480]	glucose-ferment	no	89.289	no

Availability in culture collections External links

[Ref.: #44028]

Culture collection no.

KCTC 42507, CGMCC 1.15111

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44028

M. Tang, C. Chen, J. Li, W. Xiang, H. Wu, J. Wu, S. Dai, H. Wu, T. Li and G. Wang: Fabivirga thermotolerans gen. nov., sp. nov., a novel marine bacterium isolated from culture broth of a marine cyanobacterium. IJSEM 66: 1095 - 1099 2016 ( DOI 10.1099/ijsem.0.000839 , PubMed 26652750 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Roseivirga thermotolerans CGMCC 1.15111

Roseivirga thermotolerans CGMCC 1.15111

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