Name: Frondibacter mangrovi 02OK1/10-76
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141097

Type strain:

Species: Frondibacter mangrovi

Strain Designation: 02OK1/10-76

Culture col. no.: KCTC 52666, NBRC 112695

Strain history: <- Hiroaki Kasai, Kitasato Univ.

NCBI tax ID(s): 1968282 (species)

Section

Frondibacter mangrovi 02OK1/10-76 is an obligate aerobe, chemoheterotroph, Gram-negative bacterium that forms circular colonies and has a light-yellow pigmentation.

colony-forming
Gram-negative
pigmented
rod-shaped
chemoheterotroph
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Frondibacter*
	Species	**Frondibacter mangrovi**
	Full Scientific Name (LPSN)	Frondibacter mangrovi Yoon et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #44006]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #44006]	Cell length	1.2-1.3 µm

[Ref.: #44006]	Cell width	0.5-0.6 µm

[Ref.: #44006]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #44006]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #44006]	Colony color	light-yellow
[Ref.: #44006]	Colony shape	circular
[Ref.: #44006]	Incubation period	3 days
[Ref.: #44006]	Cultivation medium used	marine agar 2216

[Ref.: #44006]	Pigment production	yes
[Ref.: #44006]	Pigmentation color	light-yellow
[Ref.: #44006]	Pigment production	no
[Ref.: #44006]	Pigment name	flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #44006]

Culture medium

Marine agar (MA)

[Ref.: #44006]

Culture medium growth

		Temperature
[Ref.: #44006]	growth	10-37 °C
[Ref.: #44006]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #44006]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #44006]			optimum	7
[Ref.: #44006]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44006]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #44006]

Nutrition type

chemoheterotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44006]		NaCl		growth	0-7	%
[Ref.: #44006]		NaCl		optimum	2	%

[Ref.: #44006]	Observation	the major respiratory menaquinone is MK-6
[Ref.: #44006]	Observation	the major polar lipids are phosphatidylethanolamine
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44006]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #44006]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #44006]	agar ChEBI	-	hydrolysis
[Ref.: #44006]	amygdalin ChEBI	-	builds acid from
[Ref.: #44006]	arbutin ChEBI	+	builds acid from
[Ref.: #44006]	casein	-	hydrolysis
[Ref.: #44006]	cellobiose ChEBI	-	builds acid from
[Ref.: #44006]	D-arabinose ChEBI	-	builds acid from
[Ref.: #44006]	D-arabitol ChEBI	-	builds acid from
[Ref.: #44006]	D-fucose ChEBI	-	builds acid from
[Ref.: #44006]	D-tagatose ChEBI	-	builds acid from
[Ref.: #44006]	D-xylose ChEBI	+	builds acid from
[Ref.: #44006]	dna ChEBI	+	hydrolysis
[Ref.: #44006]	erythritol ChEBI	-	builds acid from
[Ref.: #44006]	esculin ferric citrate	+	builds acid from
[Ref.: #44006]	fructose ChEBI	+	builds acid from
[Ref.: #44006]	galactitol ChEBI	+/-	builds acid from
[Ref.: #44006]	galactose ChEBI	-	builds acid from
[Ref.: #44006]	gelatin ChEBI	+	hydrolysis
[Ref.: #44006]	gentiobiose ChEBI	-	builds acid from
[Ref.: #44006]	gluconate ChEBI	-	builds acid from
[Ref.: #44006]	glucose ChEBI	-	builds acid from
[Ref.: #44006]	glycerol ChEBI	-	builds acid from
[Ref.: #44006]	glycogen ChEBI	-	builds acid from
[Ref.: #44006]	inulin ChEBI	-	builds acid from
[Ref.: #44006]	L-arabinose ChEBI	-	builds acid from
[Ref.: #44006]	L-arabitol ChEBI	-	builds acid from
[Ref.: #44006]	L-fucose ChEBI	-	builds acid from
[Ref.: #44006]	L-lyxose ChEBI	-	builds acid from
[Ref.: #44006]	L-xylose ChEBI	-	builds acid from
[Ref.: #44006]	lactose ChEBI	-	builds acid from
[Ref.: #44006]	maltose ChEBI	-	builds acid from
[Ref.: #44006]	mannitol ChEBI	-	builds acid from
[Ref.: #44006]	mannose ChEBI	-	builds acid from
[Ref.: #44006]	melezitose ChEBI	+	builds acid from
[Ref.: #44006]	melibiose ChEBI	-	builds acid from
[Ref.: #44006]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #44006]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #44006]	myo-inositol ChEBI	-	builds acid from
[Ref.: #44006]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #44006]	nitrate ChEBI	-	reduction
[Ref.: #44006]	rhamnose ChEBI	-	builds acid from
[Ref.: #44006]	ribitol ChEBI	-	builds acid from
[Ref.: #44006]	ribose ChEBI	+	builds acid from
[Ref.: #44006]	salicin ChEBI	+	builds acid from
[Ref.: #44006]	sodium citrate ChEBI	+	assimilation
[Ref.: #44006]	sorbitol ChEBI	-	builds acid from
[Ref.: #44006]	sorbose ChEBI	-	builds acid from
[Ref.: #44006]	starch ChEBI	-	builds acid from
[Ref.: #44006]	starch ChEBI	-	hydrolysis
[Ref.: #44006]	sucrose ChEBI	-	builds acid from
[Ref.: #44006]	trehalose ChEBI	-	builds acid from
[Ref.: #44006]	turanose ChEBI	+	builds acid from
[Ref.: #44006]	tween 20 ChEBI	+	hydrolysis
[Ref.: #44006]	tween 80 ChEBI	+	hydrolysis
[Ref.: #44006]	tyrosine ChEBI	-	hydrolysis
[Ref.: #44006]	urea ChEBI	+	hydrolysis
[Ref.: #44006]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #44006]	acetoin ChEBI	yes
[Ref.: #44006]	hydrogen sulfide ChEBI	no
[Ref.: #44006]	indole-3-acetate ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #44006]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #44006]	acid phosphatase	+	3.1.3.2
[Ref.: #44006]	alkaline phosphatase	+	3.1.3.1
[Ref.: #44006]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #44006]	alpha-fucosidase	-	3.2.1.51
[Ref.: #44006]	alpha-galactosidase	-	3.2.1.22
[Ref.: #44006]	alpha-glucosidase	+	3.2.1.20
[Ref.: #44006]	alpha-mannosidase	-	3.2.1.24
[Ref.: #44006]	arginine dihydrolase	+	3.5.3.6
[Ref.: #44006]	beta-galactosidase	-	3.2.1.23
[Ref.: #44006]	beta-galactosidase	+	3.2.1.23
[Ref.: #44006]	beta-glucosidase	+	3.2.1.21
[Ref.: #44006]	beta-glucuronidase	-	3.2.1.31
[Ref.: #44006]	catalase	+	1.11.1.6
[Ref.: #44006]	cystine arylamidase	-	3.4.11.3
[Ref.: #44006]	cytochrome oxidase	+	1.9.3.1
[Ref.: #44006]	esterase (C 4)	-
[Ref.: #44006]	esterase Lipase (C 8)	-
[Ref.: #44006]	leucine arylamidase	+	3.4.11.1
[Ref.: #44006]	lipase	-
[Ref.: #44006]	lysine decarboxylase	+	4.1.1.18
[Ref.: #44006]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #44006]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #44006]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #44006]	trypsin	-	3.4.21.4
[Ref.: #44006]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44006]

Fatty acid	Percentage
C15:0 iso	19.9
C17:0 iso 3OH	17.7
C16:0 iso 3OH	12.8
C15:1 iso G	8.5
C16:1ω7c and/or C16:1ω6c	8
C15:0 iso 3OH	7
C14:0 iso	3.3
C16:1 iso H	3.2
10-methyl C16:0 and/or iso-C17:1ω9c	3
C16:0 iso	2.7
C13:0 iso	2.3
C15:0 anteiso	2.1
C15:0 3OH	2
C15:1ω6C	1.7
C16:0	1.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44006]	Sample type/isolated from	seawater (by using an in situ cultivation technique)
[Ref.: #44006]	Geographic location (country and/or sea, region)	Gesashi Bay, Okinawa
[Ref.: #44006]	Country	Japan
[Ref.: #44006]	Country ISO 3 Code	JPN
[Ref.: #44006]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater in Gesashi Bay
[Ref.: #67771]	Geographic location (country and/or sea, region)	Okinawa
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #44006]	16S rRNA gene sequence	LC221831		GenBank

[Ref.: #44006]	GC-content	35 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	35.0 mol%

Availability in culture collections External links

[Ref.: #44006]

Culture collection no.

KCTC 52666, NBRC 112695

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Frondibacter mangrovi sp. nov., a member of the family Flavobacteriaceae isolated from seawater by in situ cultivation, and emended description of Frondibacter aureus.	Yoon J, Yasumoto-Hirose M, Kasai H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002404	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44006

Jaewoo Yoon, Mina Yasumoto-Hirose, Hiroaki Kasai: Frondibacter mangrovi sp. nov., a member of the family Flavobacteriaceae isolated from seawater by in situ cultivation, and emended description of Frondibacter aureus. IJSEM 67: 5013 - 5018 2017 ( DOI 10.1099/ijsem.0.002404 , PubMed 29022548 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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