Name: Pseudofulvibacter gastropodicola KCCM 43046
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 141090

Type strain:

Species: Pseudofulvibacter gastropodicola

Culture col. no.: KCCM 43046, JCM 30369, MEBiC 08749

Strain history: K. K. Kwon; Korea Inst. of Ocean Sci. & Technol., South Korea; MEBiC08749.

NCBI tax ID(s): 1524960 (species)

Special Collections

Section

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Pseudofulvibacter gastropodicola KCCM 43046 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from marine conch.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Pseudofulvibacter*
	Species	**Pseudofulvibacter gastropodicola**
	Full Scientific Name (LPSN)	Pseudofulvibacter gastropodicola Yang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43997]	Gram stain	negative

[Ref.: #43997]	Cell length	1.8-2.3 µm

[Ref.: #43997]	Cell width	0.4-0.6 µm

[Ref.: #43997]	Cell shape	rod-shaped

[Ref.: #43997]	Motility	no

[Ref.: #43997]	Colony size	0.5-1.0 mm

[Ref.: #43997]	Colony color	yellow
[Ref.: #43997]	Colony shape	circular
[Ref.: #43997]	Cultivation medium used	solid marine agar 2216

[Ref.: #43997]	Incubation period	2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43997]

Culture medium

solid marine agar 2216

[Ref.: #43997]

Culture medium growth

		Temperature
[Ref.: #43997]	optimum	25 °C
[Ref.: #43997]	growth	5-31 °C
[Ref.: #67770]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #43997]			optimum	7.5
[Ref.: #43997]			growth	6.0-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43997]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43997]		NaCl		growth	0-6.0	%
[Ref.: #43997]		NaCl		optimum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43997]	3-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #43997]	acetate ChEBI	+	oxidation
[Ref.: #43997]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #43997]	cis-aconitate ChEBI	+	oxidation
[Ref.: #43997]	citrate ChEBI	+	oxidation
[Ref.: #43997]	D-alanine ChEBI	+	oxidation
[Ref.: #43997]	D-arabitol ChEBI	+	oxidation
[Ref.: #43997]	D-fructose ChEBI	+	oxidation
[Ref.: #43997]	D-glucarate ChEBI	+	oxidation
[Ref.: #43997]	D-gluconate ChEBI	+	oxidation
[Ref.: #43997]	D-mannitol ChEBI	+	oxidation
[Ref.: #43997]	D-mannose ChEBI	+	oxidation
[Ref.: #43997]	formate ChEBI	+	oxidation
[Ref.: #43997]	gamma-aminobutyric acid ChEBI	+	oxidation
[Ref.: #43997]	L-alaninamide ChEBI	+	oxidation
[Ref.: #43997]	L-alanine ChEBI	+	oxidation
[Ref.: #43997]	L-arabinose ChEBI	+	oxidation
[Ref.: #43997]	L-asparagine ChEBI	+	oxidation
[Ref.: #43997]	L-aspartate ChEBI	+	oxidation
[Ref.: #43997]	L-glutamate ChEBI	+	oxidation
[Ref.: #43997]	L-proline ChEBI	+	oxidation
[Ref.: #43997]	L-serine ChEBI	+	oxidation
[Ref.: #43997]	lactate ChEBI	+	oxidation
[Ref.: #43997]	methyl pyruvate ChEBI	+	oxidation
[Ref.: #43997]	monomethyl succinate ChEBI	+	oxidation
[Ref.: #43997]	nitrate ChEBI	-	reduction
[Ref.: #43997]	propionate ChEBI	+	oxidation
[Ref.: #43997]	putrescine ChEBI	+	oxidation
[Ref.: #43997]	quinate ChEBI	+	oxidation
[Ref.: #43997]	starch ChEBI	-	degradation
[Ref.: #43997]	succinamate ChEBI	+	oxidation
[Ref.: #43997]	tween 40 ChEBI	+	oxidation
[Ref.: #43997]	tween 80 ChEBI	+	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43997]		acetoin ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43997]	acid phosphatase	+	3.1.3.2
[Ref.: #43997]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43997]	catalase	+	1.11.1.6
[Ref.: #43997]	cystine arylamidase	+	3.4.11.3
[Ref.: #43997]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43997]	esterase (C 4)	+
[Ref.: #43997]	esterase Lipase (C 8)	+
[Ref.: #43997]	gelatinase	+
[Ref.: #43997]	leucine arylamidase	+	3.4.11.1
[Ref.: #43997]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43997]	trypsin	+	3.4.21.4
[Ref.: #43997]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43997]

Fatty acid	Percentage
C15:0 iso	28.5
C17:0 iso 3OH	16.4
10-methyl C16:0 and/or iso-C17:1ω9c	9.7
C16:1ω6c and/or C16:1ω7c	9.5
C15:1 iso G	9.1
C15:0 iso 3OH	6.8
C16:0 3OH	4.7
C13:1at12-13	4.1
C14:0	2.4
C16:0	1.9
C13:0 iso	1.8
C16:0 iso 3OH	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43997]	Sample type/isolated from	marine conch
[Ref.: #43997]	Geographic location (country and/or sea, region)	Samcheok Port in the East Sea, Sea of Japan
[Ref.: #43997]	Country	Republic of Korea
[Ref.: #43997]	Country ISO 3 Code	KOR
[Ref.: #43997]	Continent	Asia
[Ref.: #43997]	Geographic location	36.0796°/129.1940°

[Ref.: #67770]	Sample type/isolated from	Marine conch collected at Samcheok Port
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43997]	Pseudofulvibacter gastropodicola 16S ribosomal RNA gene, partial sequence	KJ918743		GenBank ENA

[Ref.: #43997]

GC-content

30 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43997]

Culture collection no.

KCCM 43046, JCM 30369, MEBiC 08749

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudofulvibacter gastropodicola sp. nov., isolated from a marine conch and emended descriptions of the genus Pseudofulvibacter Yoon et al. 2013 and Pseudofulvibacter geojedonensis.	Yang SH, Seo HS, Lee JH, Kim SJ, Kyoung Kwon K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000734	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43997

Sung-Hyun Yang, Hyun-Seok Seo, Jung-Hyun Lee, Sang-Jin Kim, Kae Kyoung Kwon: Pseudofulvibacter gastropodicola sp. nov., isolated from a marine conch and emended descriptions of the genus Pseudofulvibacter Yoon et al. 2013 and Pseudofulvibacter geojedonensis. IJSEM 66: 430 - 434 2016 ( DOI 10.1099/ijsem.0.000734 , PubMed 26537663 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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