Name: Sphingobacterium griseoflavum SCU-B140
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141086

Type strain:

Species: Sphingobacterium griseoflavum

Strain Designation: SCU-B140

Culture col. no.: KCTC 42158, CGMCC 1.12966

Strain history: <- Xiufeng Long, Yongqiang Tian, Sichuan Univ.

NCBI tax ID(s): 1474952 (species)

Section

Sphingobacterium griseoflavum SCU-B140 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from insect Teleogryllus occipitalis captured from a deserted cropland in Chengdu, China.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Sphingobacterium*
	Species	**Sphingobacterium griseoflavum**
	Full Scientific Name (LPSN)	Sphingobacterium griseoflavum Long et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43986]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #43986]	Cell length	1.1-2.0 µm

[Ref.: #43986]	Cell width	0.4-0.6 µm

[Ref.: #43986]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43986]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #43986]	Colony color	greyish-yellow
[Ref.: #43986]	Colony shape	circular
[Ref.: #43986]	Cultivation medium used	Tryptose soya agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43986]

Culture medium

Tryptose soya agar

[Ref.: #43986]

Culture medium growth

		Temperature
[Ref.: #43986]	growth	10-40 °C
[Ref.: #43986]	optimum	30 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #43986]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43986]			optimum	7.2
[Ref.: #43986]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43986]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43986]		NaCl		growth	0-4	%(w/v)
[Ref.: #43986]		NaCl		optimum	1	%(w/v)

[Ref.: #43986]	Observation	quinone MK-7
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43986]	2,3-butanediol ChEBI	-	assimilation
[Ref.: #43986]	2-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #43986]	2-oxobutanoate ChEBI	-	assimilation
[Ref.: #43986]	2-oxoglutarate ChEBI	-	assimilation
[Ref.: #43986]	4-hydroxy-L-proline ChEBI	-	assimilation
[Ref.: #43986]	4-hydroxyphenylacetic acid ChEBI	-	assimilation
[Ref.: #43986]	alpha-cyclodextrin ChEBI	-	assimilation
[Ref.: #43986]	alpha-D-glucose ChEBI	+	assimilation
[Ref.: #43986]	alpha-lactose ChEBI	+	assimilation
[Ref.: #43986]	beta-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #43986]	bromosuccinate ChEBI	-	assimilation
[Ref.: #43986]	cellobiose ChEBI	+	assimilation
[Ref.: #43986]	cellobiose ChEBI	+	builds acid from
[Ref.: #43986]	cis-aconitate ChEBI	-	assimilation
[Ref.: #43986]	citrate ChEBI	-	assimilation
[Ref.: #43986]	D-alanine ChEBI	-	assimilation
[Ref.: #43986]	D-arabinose ChEBI	+	builds acid from
[Ref.: #43986]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43986]	D-fructose ChEBI	+	assimilation
[Ref.: #43986]	D-fructose ChEBI	+	builds acid from
[Ref.: #43986]	D-fucose ChEBI	-	builds acid from
[Ref.: #43986]	D-galactonic acid lactone ChEBI	-	assimilation
[Ref.: #43986]	D-galactose ChEBI	+	assimilation
[Ref.: #43986]	D-galactose ChEBI	+	builds acid from
[Ref.: #43986]	D-glucosaminic acid ChEBI	-	assimilation
[Ref.: #43986]	D-glucose ChEBI	+	builds acid from
[Ref.: #43986]	D-glucose 6-phosphate ChEBI	-	assimilation
[Ref.: #43986]	D-mannitol ChEBI	-	assimilation
[Ref.: #43986]	D-mannose ChEBI	+	assimilation
[Ref.: #43986]	D-mannose ChEBI	+	builds acid from
[Ref.: #43986]	D-ribose ChEBI	+	builds acid from
[Ref.: #43986]	D-saccharate ChEBI	-	assimilation
[Ref.: #43986]	D-serine ChEBI	-	assimilation
[Ref.: #43986]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43986]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #43986]	D-xylose ChEBI	-	builds acid from
[Ref.: #43986]	DL-carnitine ChEBI	-	assimilation
[Ref.: #43986]	erythritol ChEBI	-	assimilation
[Ref.: #43986]	ethanolamine ChEBI	-	assimilation
[Ref.: #43986]	galactitol ChEBI	-	builds acid from
[Ref.: #43986]	gamma-aminobutyric acid ChEBI	-	assimilation
[Ref.: #43986]	gamma-cyclodextrin ChEBI	+	assimilation
[Ref.: #43986]	gelatin ChEBI	-	hydrolysis
[Ref.: #43986]	gentiobiose ChEBI	+	assimilation
[Ref.: #43986]	glucose ChEBI	-	fermentation
[Ref.: #43986]	glucose 1-phosphate ChEBI	-	assimilation
[Ref.: #43986]	glucuronamide ChEBI	-	assimilation
[Ref.: #43986]	glycerol 1-phosphate ChEBI	-	assimilation
[Ref.: #43986]	glycerol 3-phosphate ChEBI	-	assimilation
[Ref.: #43986]	glycogen ChEBI	+	builds acid from
[Ref.: #43986]	glycyl L-aspartic acid ChEBI	-	assimilation
[Ref.: #43986]	glycyl-l-glutamate ChEBI	+	assimilation
[Ref.: #43986]	indole-3-acetic acid ChEBI	+	assimilation
[Ref.: #43986]	inosine ChEBI	-	assimilation
[Ref.: #43986]	inulin ChEBI	+	builds acid from
[Ref.: #43986]	itaconate ChEBI	-	assimilation
[Ref.: #43986]	L-arabinose ChEBI	+	assimilation
[Ref.: #43986]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43986]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43986]	L-aspartate ChEBI	-	assimilation
[Ref.: #43986]	L-fucose ChEBI	-	assimilation
[Ref.: #43986]	L-fucose ChEBI	-	builds acid from
[Ref.: #43986]	L-glutamate ChEBI	-	assimilation
[Ref.: #43986]	L-histidine ChEBI	-	assimilation
[Ref.: #43986]	L-leucine ChEBI	-	assimilation
[Ref.: #43986]	L-ornithine ChEBI	-	assimilation
[Ref.: #43986]	L-phenylalanine ChEBI	-	assimilation
[Ref.: #43986]	L-proline ChEBI	-	assimilation
[Ref.: #43986]	L-pyroglutamic acid ChEBI	-	assimilation
[Ref.: #43986]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43986]	L-rhamnose ChEBI	+	assimilation
[Ref.: #43986]	L-serine ChEBI	+	assimilation
[Ref.: #43986]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43986]	L-threonine ChEBI	+	assimilation
[Ref.: #43986]	L-xylose ChEBI	-	builds acid from
[Ref.: #43986]	lactate ChEBI	-	assimilation
[Ref.: #43986]	lactulose ChEBI	+	assimilation
[Ref.: #43986]	maltose ChEBI	+	builds acid from
[Ref.: #43986]	maltose hydrate	+	assimilation
[Ref.: #43986]	melibiose ChEBI	-	builds acid from
[Ref.: #43986]	melibiose ChEBI	+	assimilation
[Ref.: #43986]	methyl beta-D-glucopyranoside ChEBI	+	assimilation
[Ref.: #43986]	methylmalonic acid ChEBI	-	assimilation
[Ref.: #43986]	myo-inositol ChEBI	+	builds acid from
[Ref.: #43986]	N-acetylgalactosamine ChEBI	+	assimilation
[Ref.: #43986]	phenylethylamine ChEBI	-	assimilation
[Ref.: #43986]	putrescine ChEBI	-	assimilation
[Ref.: #43986]	raffinose ChEBI	+	assimilation
[Ref.: #43986]	raffinose ChEBI	+	builds acid from
[Ref.: #43986]	ribitol ChEBI	-	assimilation
[Ref.: #43986]	sebacic acid ChEBI	-	assimilation
[Ref.: #43986]	starch ChEBI	-	hydrolysis
[Ref.: #43986]	starch ChEBI	+	builds acid from
[Ref.: #43986]	succinamate ChEBI	-	assimilation
[Ref.: #43986]	succinate ChEBI	-	assimilation
[Ref.: #43986]	sucrose ChEBI	+	assimilation
[Ref.: #43986]	thymidine ChEBI	-	assimilation
[Ref.: #43986]	trehalose ChEBI	+	assimilation
[Ref.: #43986]	trehalose ChEBI	+	builds acid from
[Ref.: #43986]	turanose ChEBI	-	builds acid from
[Ref.: #43986]	turanose ChEBI	+	assimilation
[Ref.: #43986]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43986]	tween 40 ChEBI	+	assimilation
[Ref.: #43986]	tween 80 ChEBI	+	assimilation
[Ref.: #43986]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43986]	urocanic acid ChEBI	-	assimilation
[Ref.: #43986]	xylitol ChEBI	-	assimilation
[Ref.: #43986]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43986]	acetoin ChEBI	no
[Ref.: #43986]	hydrogen sulfide ChEBI	no
[Ref.: #43986]	indole ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43986]		acetoin ChEBI	-
[Ref.: #43986]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43986]	catalase	+	1.11.1.6
[Ref.: #43986]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43986]	nitrate reductase	+	1.7.99.4
[Ref.: #43986]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43986]	Sample type/isolated from	insect Teleogryllus occipitalis captured from a deserted cropland in Chengdu, China
[Ref.: #43986]	Geographic location (country and/or sea, region)	Chengdu
[Ref.: #43986]	Country	China
[Ref.: #43986]	Country ISO 3 Code	CHN
[Ref.: #43986]	Continent	Asia
[Ref.: #43986]	Geographic location	30.5500°/103.9670°
[Ref.: #43986]	Enrichment culture	Tryptose soya agar
[Ref.: #43986]	Enrichment culture duration	7 days
[Ref.: #43986]	Enrichment culture temperature	30 ̊C

[Ref.: #67771]	Sample type/isolated from	From insect(cricket) `Teleogryllus occipitalis` in deserted cropland
[Ref.: #67771]	Geographic location (country and/or sea, region)	Chengdu
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Insecta

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ000806 (>99% sequence identity) for Sphingobacterium griseoflavum subclade from Microbeatlas

Aquatic Samples	22
Soil Samples	22
Animal Samples	81
Plant Samples	20
Total Samples	145

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43986]	16S rRNA gene sequence	KJ000806		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingobacterium griseoflavum CGMCC 1.12966	GCA_014653155	scaffold	GenBank	1474952 tax ID	*
[Ref.: #66792]	Sphingobacterium griseoflavum strain CGMCC 1.12966	1474952.3	wgs	PATRIC	1474952 tax ID	*

[Ref.: #43986]	GC-content	41.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	41.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphingobacterium griseoflavum CGMCC 1.12966 NCBI: GCA_014653155.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingobacterium griseoflavum CGMCC 1.12966 NCBI: GCA_014653155.1
[Ref.: #69480]	motile	no	90.416	no
[Ref.: #69480]	flagellated	no	95.933	yes
[Ref.: #69480]	gram-positive	no	97.748	yes
[Ref.: #69480]	anaerobic	no	98.748	yes
[Ref.: #69480]	aerobic	yes	84.877	no
[Ref.: #69480]	halophile	no	92.049	yes
[Ref.: #69480]	spore-forming	no	96.167	no
[Ref.: #69480]	thermophile	no	99.244	yes
[Ref.: #69480]	glucose-util	yes	92.09	yes
[Ref.: #69480]	glucose-ferment	no	91.098	yes

Availability in culture collections External links

[Ref.: #43986]

Culture collection no.

KCTC 42158, CGMCC 1.12966

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium solani sp. nov., isolated from potato stems.	Niu X, Cui W, Cui M, Zhang X, Zhang S, Xu B, Gao M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002605	2018	*
Phylogeny	Sphingobacterium griseoflavum sp. nov., isolated from the insect Teleogryllus occipitalis living in deserted cropland.	Long X, Liu B, Zhang S, Zhang Y, Zeng Z, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.000970	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43986

Xiufeng Long, Bo Liu, Shuai Zhang, Yuqin Zhang, Zhigang Zeng, Yongqiang Tian: Sphingobacterium griseoflavum sp. nov., isolated from the insect Teleogryllus occipitalis living in deserted cropland. IJSEM 66: 1956 - 1961 2016 ( DOI 10.1099/ijsem.0.000970 , PubMed 26873062 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Sphingobacterium griseoflavum CGMCC 1.12966

Sphingobacterium griseoflavum CGMCC 1.12966

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