Sphingobacterium griseoflavum (KCTC 42158, CGMCC 1.12966, SCU-B140)

Name: Sphingobacterium griseoflavum (KCTC 42158, CGMCC 1.12966, SCU-B140)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141086

Type strain

Strain Designation SCU-B140

Culture col. no. KCTC 42158 CGMCC 1.12966 SCU-B140

NCBI tax ID(s) 1474952

Special Collections KCTC Literature strains

Links

Sphingobacterium griseoflavum SCU-B140 is an aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from insect Teleogryllus occipitalis captured from a deserted cropland in Chengdu, China.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 25070

KCTC 42158

@ref 20215

Last LPSN update 2025-12-16 10:03:46

Domain Pseudomonadati

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Sphingobacterium

Species Sphingobacterium griseoflavum

Full scientific name Sphingobacterium griseoflavum Long et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
43986	negative	1.1-2.0 µm	0.4-0.6 µm	rod-shaped
67771				rod-shaped
67771	negative
125439	negative				95.5
125438	negative				98.604

Colony morphology

@ref	Colony color	Colony shape	Medium used
43986	greyish-yellow	circular	Tryptose soya agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43986	Tryptose soya agar

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43986	positive	growth	10-40
43986	positive	optimum	30	mesophilic
67771	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43986	positive	optimum	7.2
43986	positive	growth	6.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43986	aerobe
67771	aerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43986	NaCl	positive	growth	0-4 %(w/v)
43986	NaCl	positive	optimum	1 %(w/v)

Observation

@ref	Observation
43986	quinone MK-7
67771	quinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43986	62064 ChEBI	2,3-butanediol	-	assimilation
43986	64552 ChEBI	2-hydroxybutyrate	-	assimilation
43986	16763 ChEBI	2-oxobutanoate	-	assimilation
43986	30916 ChEBI	2-oxoglutarate	-	assimilation
43986	18240 ChEBI	4-hydroxy-L-proline	-	assimilation
43986	18101 ChEBI	4-hydroxyphenylacetic acid	-	assimilation
43986	40585 ChEBI	alpha-cyclodextrin	-	assimilation
43986	17925 ChEBI	alpha-D-glucose	+	assimilation
43986	36219 ChEBI	alpha-lactose	+	assimilation
43986	8295 ChEBI	beta-hydroxybutyrate	-	assimilation
43986	73706 ChEBI	bromosuccinate	-	assimilation
43986	17057 ChEBI	cellobiose	+	assimilation
43986	17057 ChEBI	cellobiose	+	builds acid from
43986	16383 ChEBI	cis-aconitate	-	assimilation
43986	16947 ChEBI	citrate	-	assimilation
43986	15570 ChEBI	D-alanine	-	assimilation
43986	17108 ChEBI	D-arabinose	+	builds acid from
43986	18333 ChEBI	D-arabitol	-	builds acid from
43986	15824 ChEBI	D-fructose	+	assimilation
43986	15824 ChEBI	D-fructose	+	builds acid from
43986	28847 ChEBI	D-fucose	-	builds acid from
43986	15895 ChEBI	D-galactonic acid lactone	-	assimilation
43986	12936 ChEBI	D-galactose	+	assimilation
43986	12936 ChEBI	D-galactose	+	builds acid from
43986	17784 ChEBI	D-glucosaminic acid	-	assimilation
43986	17634 ChEBI	D-glucose	+	builds acid from
43986	14314 ChEBI	D-glucose 6-phosphate	-	assimilation
43986	16899 ChEBI	D-mannitol	-	assimilation
43986	16024 ChEBI	D-mannose	+	assimilation
43986	16024 ChEBI	D-mannose	+	builds acid from
43986	16988 ChEBI	D-ribose	+	builds acid from
43986	33801 ChEBI	D-saccharate	-	assimilation
43986	16523 ChEBI	D-serine	-	assimilation
43986	17924 ChEBI	D-sorbitol	-	assimilation
43986	17924 ChEBI	D-sorbitol	+	builds acid from
43986	65327 ChEBI	D-xylose	-	builds acid from
43986	17126 ChEBI	DL-carnitine	-	assimilation
43986	17113 ChEBI	erythritol	-	assimilation
43986	16000 ChEBI	ethanolamine	-	assimilation
43986	16813 ChEBI	galactitol	-	builds acid from
43986	16865 ChEBI	gamma-aminobutyric acid	-	assimilation
43986	495056 ChEBI	gamma-cyclodextrin	+	assimilation
43986	5291 ChEBI	gelatin	-	hydrolysis
43986	28066 ChEBI	gentiobiose	+	assimilation
43986	17234 ChEBI	glucose	-	fermentation
43986	29042 ChEBI	glucose 1-phosphate	-	assimilation
43986	32323 ChEBI	glucuronamide	-	assimilation
43986	14336 ChEBI	glycerol 1-phosphate	-	assimilation
43986	15978 ChEBI	glycerol 3-phosphate	-	assimilation
43986	28087 ChEBI	glycogen	+	builds acid from
43986	73804 ChEBI	glycyl L-aspartic acid	-	assimilation
43986	73784 ChEBI	glycyl-l-glutamate	+	assimilation
43986	16411 ChEBI	indole-3-acetic acid	+	assimilation
43986	17596 ChEBI	inosine	-	assimilation
43986	15443 ChEBI	inulin	+	builds acid from
43986	17240 ChEBI	itaconate	-	assimilation
43986	30849 ChEBI	L-arabinose	+	assimilation
43986	30849 ChEBI	L-arabinose	+	builds acid from
43986	18403 ChEBI	L-arabitol	-	builds acid from
43986	29991 ChEBI	L-aspartate	-	assimilation
43986	18287 ChEBI	L-fucose	-	assimilation
43986	18287 ChEBI	L-fucose	-	builds acid from
43986	29985 ChEBI	L-glutamate	-	assimilation
43986	15971 ChEBI	L-histidine	-	assimilation
43986	15603 ChEBI	L-leucine	-	assimilation
43986	15729 ChEBI	L-ornithine	-	assimilation
43986	17295 ChEBI	L-phenylalanine	-	assimilation
43986	17203 ChEBI	L-proline	-	assimilation
43986	18183 ChEBI	L-pyroglutamic acid	-	assimilation
43986	62345 ChEBI	L-rhamnose	-	builds acid from
43986	62345 ChEBI	L-rhamnose	+	assimilation
43986	17115 ChEBI	L-serine	+	assimilation
43986	17266 ChEBI	L-sorbose	-	builds acid from
43986	16857 ChEBI	L-threonine	+	assimilation
43986	65328 ChEBI	L-xylose	-	builds acid from
43986	24996 ChEBI	lactate	-	assimilation
43986	6359 ChEBI	lactulose	+	assimilation
43986	17306 ChEBI	maltose	+	builds acid from
43986		maltose hydrate	+	assimilation
43986	28053 ChEBI	melibiose	-	builds acid from
43986	28053 ChEBI	melibiose	+	assimilation
43986	320055 ChEBI	methyl beta-D-glucopyranoside	+	assimilation
43986	30860 ChEBI	methylmalonic acid	-	assimilation
43986	17268 ChEBI	myo-inositol	+	builds acid from
43986	28037 ChEBI	N-acetylgalactosamine	+	assimilation
43986	50048 ChEBI	phenylethylamine	-	assimilation
43986	17148 ChEBI	putrescine	-	assimilation
43986	16634 ChEBI	raffinose	+	assimilation
43986	16634 ChEBI	raffinose	+	builds acid from
43986	15963 ChEBI	ribitol	-	assimilation
43986	41865 ChEBI	sebacic acid	-	assimilation
43986	28017 ChEBI	starch	-	hydrolysis
43986	28017 ChEBI	starch	+	builds acid from
43986	143136 ChEBI	succinamate	-	assimilation
43986	30031 ChEBI	succinate	-	assimilation
43986	17992 ChEBI	sucrose	+	assimilation
43986	17748 ChEBI	thymidine	-	assimilation
43986	27082 ChEBI	trehalose	+	assimilation
43986	27082 ChEBI	trehalose	+	builds acid from
43986	32528 ChEBI	turanose	-	builds acid from
43986	32528 ChEBI	turanose	+	assimilation
43986	53424 ChEBI	tween 20	+	hydrolysis
43986	53423 ChEBI	tween 40	+	assimilation
43986	53426 ChEBI	tween 80	+	assimilation
43986	53426 ChEBI	tween 80	+	hydrolysis
43986	27248 ChEBI	urocanic acid	-	assimilation
43986	17151 ChEBI	xylitol	-	assimilation
43986	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
43986	15688 ChEBI	acetoin
43986	16136 ChEBI	hydrogen sulfide
43986	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
43986	15688 ChEBI	acetoin	-
43986	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
43986	catalase	+	1.11.1.6
43986	cytochrome oxidase	+	1.9.3.1
43986	nitrate reductase	+	1.7.99.4
43986	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
43986	insect Teleogryllus occipitalis captured from a deserted cropland in Chengdu, China	Chengdu	China	CHN	Asia	30.55	103.967 30.55/103.967	Tryptose soya agar	7 days	30
67771	From insect(cricket) `Teleogryllus occipitalis` in deserted cropland	Chengdu	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KJ000806 (>99% sequence identity) for Sphingobacterium griseoflavum subclade from Microbeatlas

Aquatic Samples	22
Soil Samples	22
Animal Samples	81
Plant Samples	20
Total Samples	145

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1465315v1 assembly for Sphingobacterium griseoflavum CGMCC 1.12966	scaffold	GCA_014653155	1474952.3	2996002540	1474952	69.49
124043	ASM4268472v1 assembly for Sphingobacterium griseoflavum KCTC 42158	scaffold	GCA_042684725			1474952	60.39

16S sequences

@ref	Description	Accession	Database
43986	Sphingobacterium griseoflavum strain SCU-B140 16S ribosomal RNA gene, partial sequence	KJ000806

GC content

@ref	GC-content (mol%)	Method
43986	41.2	high performance liquid chromatography (HPLC)
67771	41.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphingobacterium griseoflavum CGMCC 1.12966
NCBI: GCA_014653155

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.50	no
125439	motility	BacteriaNetⓘ	yes	51.70	no
125439	gram_stain	BacteriaNetⓘ	negative	95.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	75.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingobacterium griseoflavum CGMCC 1.12966
NCBI: GCA_014653155.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.60	no
125438	anaerobic	anaerobicⓘ	no	97.39	yes
125438	aerobic	aerobicⓘ	yes	83.47	yes
125438	spore-forming	spore-formingⓘ	no	89.81	no
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	no	88.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium oryzagri sp. nov., isolated from rice paddy soil.	Kim S, Heo J, Choi H, Lee D, Kwon SW, Kim Y.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006371	2024
Phylogeny	Sphingobacterium solani sp. nov., isolated from potato stems.	Niu X, Cui W, Cui M, Zhang X, Zhang S, Xu B, Gao M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002605	2018
Phylogeny	Sphingobacterium griseoflavum sp. nov., isolated from the insect Teleogryllus occipitalis living in deserted cropland.	Long X, Liu B, Zhang S, Zhang Y, Zeng Z, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.000970	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43986	Xiufeng Long, Bo Liu, Shuai Zhang, Yuqin Zhang, Zhigang Zeng, Yongqiang Tian: Sphingobacterium griseoflavum sp. nov., isolated from the insect Teleogryllus occipitalis living in deserted cropland. IJSEM 66: 1956 - 1961 2016 ( DOI 10.1099/ijsem.0.000970 , PubMed 26873062 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingobacterium griseoflavum (KCTC 42158, CGMCC 1.12966, SCU-B140)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014653155

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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