Name: Rhodococcus pedocola KACC 18499
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141076

Type strain:

Species: Rhodococcus pedocola

Culture col. no.: KACC 18499, NBRC 111580, UC 12

NCBI tax ID(s): 1769755 (species)

Section

Rhodococcus pedocola KACC 18499 is an aerobe, Gram-positive, rod-shaped prokaryote that forms irregular colonies and was isolated from forest topsoil on Kyonggi University campus in Suwon, Gyeonggi-Do, South Korea.

colony-forming
Gram-positive
rod-shaped
aerobe
16S sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	*Rhodococcus*
	Species	**Rhodococcus pedocola**
	Full Scientific Name (LPSN)	Rhodococcus pedocola Nguyen and Kim 2016

Information on morphological and physiological properties Morphology

[Ref.: #43970]	Gram stain	positive

[Ref.: #43970]	Cell length	1.0-1.5 µm

[Ref.: #43970]	Cell width	0.7-1.0 µm

[Ref.: #43970]	Cell shape	rod-shaped

[Ref.: #43970]	Motility	no

[Ref.: #43970]	Colony color	pale yellowish
[Ref.: #43970]	Colony shape	irregular
[Ref.: #43970]	Cultivation medium used	Tryptone soy agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Tryptone soy agar

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43970]			growth	10-40 °C
[Ref.: #43970]			optimum	28-30 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43970]			optimum	7.0-8.0
[Ref.: #43970]			growth	4.0-10.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43970]		NaCl		growth	0-6	%(w/v)
[Ref.: #43970]		NaCl		optimum	0-3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43970]	esculin ChEBI	+	degradation
[Ref.: #43970]	esculin ferric citrate	+	builds acid from
[Ref.: #43970]	hydrogen sulfide ChEBI	+/-	degradation
[Ref.: #43970]	starch ChEBI	-	degradation
[Ref.: #43970]	tween 40 ChEBI	-	degradation
[Ref.: #43970]	tween 60 ChEBI	-	degradation
[Ref.: #43970]	tween 80 ChEBI	+/-	degradation

	Metabolite production	Metabolite	Production
[Ref.: #43970]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43970]	acid phosphatase	+	3.1.3.2
[Ref.: #43970]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43970]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43970]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43970]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43970]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43970]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43970]	beta-galactosidase	+	3.2.1.23
[Ref.: #43970]	beta-glucosidase	+	3.2.1.21
[Ref.: #43970]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43970]	catalase	+	1.11.1.6
[Ref.: #43970]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43970]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43970]	DNase	-
[Ref.: #43970]	esterase (C 4)	+
[Ref.: #43970]	esterase Lipase (C 8)	+
[Ref.: #43970]	lipase (C 14)	+
[Ref.: #43970]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43970]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43970]	trypsin	+	3.4.21.4
[Ref.: #43970]	urease	-	3.5.1.5
[Ref.: #43970]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43970]

Fatty acid	Percentage
C16:0	33.5
C16:1ω7c / C16:1ω6c	28.8
C18:1ω9c	19.2
10-methyl C18:0	6
C17:1ω8c	3.4
C14:0	2.9
C18:0	1.7
C17:0	1.5
C17:1 iso ω9c / C16:0 10-methyl	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43970]	Sample type/isolated from	forest topsoil on Kyonggi University campus in Suwon, Gyeonggi-Do, South Korea
[Ref.: #43970]	Sampling date	2015-06
[Ref.: #43970]	Geographic location (country and/or sea, region)	Suwon, Gyeonggi-Do
[Ref.: #43970]	Country	Republic of Korea
[Ref.: #43970]	Country ISO 3 Code	KOR
[Ref.: #43970]	Continent	Asia
[Ref.: #43970]	Geographic location	37.3164°/127.0190°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43970]	16S rRNA gene sequence	KT301938		GenBank

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GC-content

72.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43970]

Culture collection no.

KACC 18499, NBRC 111580, UC 12

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodococcus olei sp. nov., with the ability to degrade petroleum oil, isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002750	2018	*
Phylogeny	Rhodococcus pedocola sp. nov. and Rhodococcus humicola sp. nov., two antibiotic-producing actinomycetes isolated from soil.	Nguyen TM, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001039	2016	*
Phylogeny	Rhodococcus gannanensis sp. nov., a novel endophytic actinobacterium isolated from root of sunflower (Helianthus annuus L.).	Ma J, Zhang L, Wang G, Zhang S, Zhang X, Wang Y, Shi C, Si L, Zhao H, Liu F, Zhang B, Huang X	Antonie Van Leeuwenhoek	10.1007/s10482-017-0884-9	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43970

Tuan Manh Nguyen, Jaisoo Kim: Rhodococcus pedocola sp. nov. and Rhodococcus humicola sp. nov., two antibiotic-producing actinomycetes isolated from soil. IJSEM 66: 2362 - 2369 2016 ( DOI 10.1099/ijsem.0.001039 , PubMed 27031370 )

* These data were automatically processed and therefore are not curated

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