Name: Flavobacterium suaedae G16-7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141075

Type strain:

Species: Flavobacterium suaedae

Strain Designation: G16-7

Culture col. no.: CGMCC 1.15461, KCTC 42947

NCBI tax ID(s): 1767027 (species)

Section

Flavobacterium suaedae G16-7 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from surface sterilized root of Suaeda corniculata from banks of Wuliangsuhai lake, Bayannaoer, inner Mongolia, northern China.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium suaedae**
	Full Scientific Name (LPSN)	Flavobacterium suaedae Sun et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43969]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #43969]	Cell length	0.9-1.2 µm

[Ref.: #43969]	Cell width	0.4-0.6 µm

[Ref.: #43969]	Cell shape	rod-shaped

[Ref.: #43969]	Colony size	3.0-4.0 mm
[Ref.: #43969]	Colony color	yellow
[Ref.: #43969]	Colony shape	circular
[Ref.: #43969]	Incubation period	2 days
[Ref.: #43969]	Cultivation medium used	Luria-Bertani agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Trypticase soy agar

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43969]			growth	15-40 °C
[Ref.: #43969]			optimum	30-33 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43969]			optimum	6
[Ref.: #43969]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #43969]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43969]		NaCl		growth	1.0-8.0	%(w/v)
[Ref.: #43969]		NaCl		optimum	4	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43969]	2-oxoglutarate ChEBI	-	assimilation
[Ref.: #43969]	D-fructose ChEBI	-	assimilation
[Ref.: #43969]	D-galactose ChEBI	-	assimilation
[Ref.: #43969]	D-glucose ChEBI	-	assimilation
[Ref.: #43969]	D-mannitol ChEBI	-	assimilation
[Ref.: #43969]	D-mannose ChEBI	-	assimilation
[Ref.: #43969]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43969]	D-xylose ChEBI	-	assimilation
[Ref.: #43969]	decanoate ChEBI	-	assimilation
[Ref.: #43969]	esculin ChEBI	-	hydrolysis
[Ref.: #43969]	ethanol ChEBI	-	assimilation
[Ref.: #43969]	gelatin ChEBI	-	hydrolysis
[Ref.: #43969]	glucose ChEBI	-	fermentation
[Ref.: #43969]	glucose ChEBI	+	fermentation
[Ref.: #43969]	glutamate ChEBI	-	assimilation
[Ref.: #43969]	L-arabinose ChEBI	-	assimilation
[Ref.: #43969]	L-arginine ChEBI	-	assimilation
[Ref.: #43969]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43969]	L-tartrate ChEBI	-	assimilation
[Ref.: #43969]	lactose ChEBI	-	assimilation
[Ref.: #43969]	malate ChEBI	-	assimilation
[Ref.: #43969]	maltose ChEBI	-	assimilation
[Ref.: #43969]	methanol ChEBI	-	assimilation
[Ref.: #43969]	myo-inositol ChEBI	-	assimilation
[Ref.: #43969]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43969]	nitrate ChEBI	-	reduction
[Ref.: #43969]	phenylacetate ChEBI	-	assimilation
[Ref.: #43969]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43969]	propionate ChEBI	-	assimilation
[Ref.: #43969]	raffinose ChEBI	-	assimilation
[Ref.: #43969]	sodium citrate ChEBI	-	assimilation
[Ref.: #43969]	starch ChEBI	+	hydrolysis
[Ref.: #43969]	succinate ChEBI	-	assimilation
[Ref.: #43969]	sucrose ChEBI	-	assimilation
[Ref.: #43969]	xylitol ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43969]	amoxicillin ChEBI	yes	10	µg (disc)
[Ref.: #43969]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43969]	bacitracin ChEBI	yes	0.04	Unit (disc)
[Ref.: #43969]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43969]	cephradine ChEBI	yes	30	µg (disc)
[Ref.: #43969]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43969]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #43969]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43969]	lincomycin ChEBI	yes	2	µg (disc)
[Ref.: #43969]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #43969]	penicillin g ChEBI				yes	10	Unit (disc)
[Ref.: #43969]	polymyxin ChEBI	yes	300	Unit (disc)
[Ref.: #43969]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43969]	roxithromycin ChEBI	yes	15	µg (disc)
[Ref.: #43969]	spectinomycin ChEBI	yes	100	µg (disc)
[Ref.: #43969]	streptomycin ChEBI				yes	10	µg (disc)
[Ref.: #43969]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43969]	trimethoprim ChEBI	yes	5	µg (disc)
[Ref.: #43969]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43969]		indole ChEBI	no

	Physiological tests	Metabolite	Methylred-test
[Ref.: #43969]		glucose ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43969]	acid phosphatase	+	3.1.3.2
[Ref.: #43969]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43969]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43969]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43969]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43969]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43969]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43969]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43969]	beta-galactosidase	-	3.2.1.23
[Ref.: #43969]	beta-glucosidase	-	3.2.1.21
[Ref.: #43969]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43969]	catalase	-	1.11.1.6
[Ref.: #43969]	cystine arylamidase	-	3.4.11.3
[Ref.: #43969]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43969]	esterase (C 4)	+
[Ref.: #43969]	esterase Lipase (C 8)	+
[Ref.: #43969]	leucine arylamidase	+	3.4.11.1
[Ref.: #43969]	lipase (C 14)	-
[Ref.: #43969]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43969]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43969]	trypsin	-	3.4.21.4
[Ref.: #43969]	urease	-	3.5.1.5
[Ref.: #43969]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43969]	Sample type/isolated from	surface sterilized root of Suaeda corniculata from banks of Wuliangsuhai lake, Bayannaoer, inner Mongolia, northern China
[Ref.: #43969]	Geographic location (country and/or sea, region)	Wuliangsuhai lake, Bayannaoer, inner Mongolia
[Ref.: #43969]	Country	China
[Ref.: #43969]	Country ISO 3 Code	CHN
[Ref.: #43969]	Continent	Asia
[Ref.: #43969]	Geographic location	40.9000°/108.7000°
[Ref.: #43969]	Enrichment culture	Luria-Bertani agar
[Ref.: #43969]	Enrichment culture duration	5 days
[Ref.: #43969]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Condition	#Saline	-
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43969]	16S rRNA gene sequence	KT284905		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium suaedae CGMCC 1.15461	GCA_014642915	contig	GenBank	1767027 tax ID	*
[Ref.: #66792]	Flavobacterium suaedae strain CGMCC 1.15461	1767027.3	wgs	PATRIC	1767027 tax ID	*

[Ref.: #43969]

GC-content

34.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium suaedae strain CGMCC 1.15461 PATRIC: 1767027.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium suaedae strain CGMCC 1.15461 PATRIC: 1767027.3
[Ref.: #69480]	motile	no	88.186	no
[Ref.: #69480]	gram-positive	no	98.666	yes
[Ref.: #69480]	anaerobic	no	98.556	yes
[Ref.: #69480]	aerobic	yes	82.809	yes
[Ref.: #69480]	halophile	no	75.173	no
[Ref.: #69480]	spore-forming	no	94.751	yes
[Ref.: #69480]	glucose-util	yes	76.633	yes
[Ref.: #69480]	flagellated	no	95.595	no
[Ref.: #69480]	thermophile	no	98.158	yes
[Ref.: #69480]	glucose-ferment	no	90.521	no

Availability in culture collections External links

[Ref.: #43969]

Culture collection no.

CGMCC 1.15461, KCTC 42947

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium coralii sp. nov., a marine bacterium isolated from coral culture seawater.	Sun H, Zheng H, Wang X, Jiang Y, Liao B, Li A, Xiao B	Int J Syst Evol Microbiol	10.1099/ijsem.0.005201	2022	*
Phylogeny	Flavobacterium suaedae sp. nov., an endophyte isolated from the root of Suaeda corniculata.	Sun JQ, Xu L, Liu M, Wang XY, Wu XL	Int J Syst Evol Microbiol	10.1099/ijsem.0.000967	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43969

Ji-Quan Sun, Lian Xu, Min Liu, Xin-Ying Wang, Xiao-Lei Wu: Flavobacterium suaedae sp. nov., an endophyte isolated from the root of Suaeda corniculata. IJSEM 66: 1943 - 1949 2016 ( DOI 10.1099/ijsem.0.000967 , PubMed 26868635 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Flavobacterium suaedae strain CGMCC 1.15461

Flavobacterium suaedae strain CGMCC 1.15461

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