Name: Agromyces insulae KCTC 39117
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141074

Type strain:

Species: Agromyces insulae

Culture col. no.: KCTC 39117, CCTCC AB 2014301, CFH S0483, JCM 31741, BCRC 16983

Strain history: CCTCC AB 2014301 <-- G.-X. Nie; Henan Normal Univ., China; CFH S0483.

NCBI tax ID(s): 1644105 (species)

Section

Agromyces insulae KCTC 39117 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from soil sample collected from Catba island in Halong Bay, Vietnam.

colony-forming
Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Agromyces*
	Species	**Agromyces insulae**
	Full Scientific Name (LPSN)	Agromyces insulae Huang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43966]	Gram stain	positive

[Ref.: #43966]	Cell length	0.5-2.7 µm

[Ref.: #43966]	Cell width	0.2-0.3 µm

[Ref.: #43966]	Cell shape	rod-shaped

[Ref.: #43966]	Motility	no

[Ref.: #43966]	Colony color	cream white
[Ref.: #43966]	Colony shape	circular
[Ref.: #43966]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43966]			growth	10-37 °C
[Ref.: #67770]			growth	28 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43966]			growth	7.0-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43966]		NaCl		growth	0-2	%(w/v)

[Ref.: #43966]	Observation	quinone MK-12
[Ref.: #67770]	Observation	quinones: MK-12

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43966]	amygdalin ChEBI	-	carbon source
[Ref.: #43966]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43966]	casein	-	hydrolysis
[Ref.: #43966]	cellobiose ChEBI	+	carbon source
[Ref.: #43966]	chitin ChEBI	-	hydrolysis
[Ref.: #43966]	D-fructose ChEBI	+	carbon source
[Ref.: #43966]	D-galactose ChEBI	+	carbon source
[Ref.: #43966]	D-glucose ChEBI	+	carbon source
[Ref.: #43966]	D-mannitol ChEBI	+	carbon source
[Ref.: #43966]	D-mannose ChEBI	+	carbon source
[Ref.: #43966]	D-ribose ChEBI	-	carbon source
[Ref.: #43966]	D-xylose ChEBI	-	carbon source
[Ref.: #43966]	dextrin ChEBI	+	carbon source
[Ref.: #43966]	esculin ChEBI	+	carbon source
[Ref.: #43966]	esculin ChEBI	+	hydrolysis
[Ref.: #43966]	gelatin ChEBI	+	hydrolysis
[Ref.: #43966]	gentiobiose ChEBI	+	carbon source
[Ref.: #43966]	glucose ChEBI	-	fermentation
[Ref.: #43966]	glycerol ChEBI	+	carbon source
[Ref.: #43966]	glycine ChEBI	-	nitrogen source
[Ref.: #43966]	L-alanine ChEBI	-	nitrogen source
[Ref.: #43966]	L-arabinose ChEBI	-	carbon source
[Ref.: #43966]	L-asparagine ChEBI	-	nitrogen source
[Ref.: #43966]	L-fucose ChEBI	+	carbon source
[Ref.: #43966]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #43966]	L-histidine ChEBI	-	nitrogen source
[Ref.: #43966]	L-isoleucine ChEBI	+	nitrogen source
[Ref.: #43966]	L-proline ChEBI	+	nitrogen source
[Ref.: #43966]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43966]	L-threonine ChEBI	-	nitrogen source
[Ref.: #43966]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #43966]	L-valine ChEBI	-	nitrogen source
[Ref.: #43966]	lactose ChEBI	-	carbon source
[Ref.: #43966]	maltose ChEBI	+	carbon source
[Ref.: #43966]	melibiose ChEBI	-	carbon source
[Ref.: #43966]	myo-inositol ChEBI	-	carbon source
[Ref.: #43966]	nitrate ChEBI	-	reduction
[Ref.: #43966]	raffinose ChEBI	-	carbon source
[Ref.: #43966]	salicin ChEBI	+	carbon source
[Ref.: #43966]	sorbitol ChEBI	+	carbon source
[Ref.: #43966]	starch ChEBI	-	hydrolysis
[Ref.: #43966]	succinate ChEBI	-	carbon source
[Ref.: #43966]	sucrose ChEBI	+	carbon source
[Ref.: #43966]	trehalose ChEBI	+	carbon source
[Ref.: #43966]	turanose ChEBI	+	carbon source
[Ref.: #43966]	tween 20 ChEBI	-	degradation
[Ref.: #43966]	tween 40 ChEBI	-	degradation
[Ref.: #43966]	tween 60 ChEBI	-	degradation
[Ref.: #43966]	tween 80 ChEBI	-	degradation
[Ref.: #43966]	tyrosine ChEBI	-	hydrolysis
[Ref.: #43966]	xylan ChEBI	-	hydrolysis
[Ref.: #43966]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43966]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43966]	acid phosphatase	+	3.1.3.2
[Ref.: #43966]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43966]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43966]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43966]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43966]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43966]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43966]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43966]	beta-galactosidase	+	3.2.1.23
[Ref.: #43966]	beta-glucosidase	+	3.2.1.21
[Ref.: #43966]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43966]	catalase	-	1.11.1.6
[Ref.: #43966]	cystine arylamidase	+	3.4.11.3
[Ref.: #43966]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43966]	esterase (C 4)	+
[Ref.: #43966]	esterase Lipase (C 8)	+
[Ref.: #43966]	leucine arylamidase	+	3.4.11.1
[Ref.: #43966]	lipase (C 14)	-
[Ref.: #43966]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43966]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43966]	trypsin	+	3.4.21.4
[Ref.: #43966]	urease	-	3.5.1.5
[Ref.: #43966]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43966]

Fatty acid	Percentage
C15:0 anteiso	36.8
C17:0 anteiso	34.5
C16:0 iso	20.3
C15:0 iso	4.8
C14:0 iso	1.3
C17:0 iso	1.3
C16:0	0.5
C19:0 anteiso	0.3
C18:0 iso	0.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43966]	Sample type/isolated from	soil sample collected from Catba island in Halong Bay, Vietnam
[Ref.: #43966]	Sampling date	2012-03
[Ref.: #43966]	Geographic location (country and/or sea, region)	Halong Bay
[Ref.: #43966]	Country	Vietnam
[Ref.: #43966]	Country ISO 3 Code	VNM
[Ref.: #43966]	Continent	Asia
[Ref.: #43966]	Geographic location	20.7733°/107.1210°
[Ref.: #43966]	Enrichment culture	R2A agar

[Ref.: #67770]	Sample type/isolated from	Soil from Catba Island in Halong Bay
[Ref.: #67770]	Country	Vietnam
[Ref.: #67770]	Country ISO 3 Code	VNM
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43966]	16S rRNA gene sequence	KP232915		GenBank

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GC-content

71.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43966]

Culture collection no.

KCTC 39117, CCTCC AB 2014301, CFH S0483, JCM 31741, BCRC 16983

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces insulae sp. nov., an actinobacterium isolated from a soil sample.	Huang JR, Ming H, Li S, Meng XL, Zhang JX, Khieu TN, Tang Z, Li WJ, Nie GX	Int J Syst Evol Microbiol	10.1099/ijsem.0.000978	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43966

Jian-Rong Huang, Hong Ming, Shuai Li, Xiao-Lin Meng, Jian-Xin Zhang, Thi-Nhan Khieu, Zhong Tang, Wen-Jun Li, Guo-Xing Nie: Agromyces insulae sp. nov., an actinobacterium isolated from a soil sample. IJSEM 66: 2002 - 2007 2016 ( DOI 10.1099/ijsem.0.000978 , PubMed 26883212 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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