Name: Thalassobaculum fulvum HSF7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 141073

Type strain:

Species: Thalassobaculum fulvum

Strain Designation: HSF7

Culture col. no.: KCTC 42651, MCCC 1K01158

NCBI tax ID(s): 1633335 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Thalassobaculum fulvum HSF7 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from deep seawater of South China Sea.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Thalassobaculaceae*
	Genus	*Thalassobaculum*
	Species	**Thalassobaculum fulvum**
	Full Scientific Name (LPSN)	Thalassobaculum fulvum Su et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43965]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %99.344
[Ref.: #125439]	Gram stain	negative Confidence in %91.4

[Ref.: #43965]	Cell length	2.0-8.0 µm

[Ref.: #43965]	Cell width	1.0-1.2 µm

[Ref.: #43965]	Cell shape	rod-shaped

[Ref.: #43965]	Motility	no

[Ref.: #43965]	Colony size	1.0-2.0 mm
[Ref.: #43965]	Colony color	yellowish-brown
[Ref.: #43965]	Colony shape	circular
[Ref.: #43965]	Incubation period	4 days
[Ref.: #43965]	Cultivation medium used	Marine agar 2216

[Ref.: #43965]	Pigment production	no
[Ref.: #43965]	Pigment name	Bacteriochlorophyll alpha

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43965]

Culture medium

Marine agar (MA)

[Ref.: #43965]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43965]			growth	20-40 °C
[Ref.: #43965]			optimum	35 °C

	pH	Kind of pH		pH
[Ref.: #43965]			optimum	6.5
[Ref.: #43965]			growth	5.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43965]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99.8

[Ref.: #125439]

Ability of spore formation

no Confidence in %95.8

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43965]		NaCl		growth	0-10	%(w/v)
[Ref.: #43965]		NaCl		optimum	2	%(w/v)

[Ref.: #43965]

Observation

quinone Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43965]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #43965]	adipate ChEBI	-	assimilation
[Ref.: #43965]	arabinose ChEBI	-	assimilation
[Ref.: #43965]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43965]	casein	-	hydrolysis
[Ref.: #43965]	citrate ChEBI	-	assimilation
[Ref.: #43965]	citrate ChEBI	-	carbon source
[Ref.: #43965]	D-fructose ChEBI	-	carbon source
[Ref.: #43965]	D-galactose ChEBI	+	carbon source
[Ref.: #43965]	D-glucose ChEBI	-	fermentation
[Ref.: #43965]	D-glucose ChEBI	+	carbon source
[Ref.: #43965]	D-ribose ChEBI	-	carbon source
[Ref.: #43965]	decanoate ChEBI	-	assimilation
[Ref.: #43965]	erythritol ChEBI	+	carbon source
[Ref.: #43965]	esculin ChEBI	-	hydrolysis
[Ref.: #43965]	gelatin ChEBI	+	hydrolysis
[Ref.: #43965]	glucose ChEBI	-	assimilation
[Ref.: #43965]	glucose ChEBI	-	fermentation
[Ref.: #43965]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43965]	indole-3-acetic acid ChEBI	-	carbon source
[Ref.: #43965]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43965]	lactose ChEBI	-	carbon source
[Ref.: #43965]	malate ChEBI	-	assimilation
[Ref.: #43965]	maltose ChEBI	-	assimilation
[Ref.: #43965]	mannitol ChEBI	-	assimilation
[Ref.: #43965]	mannitol ChEBI	-	carbon source
[Ref.: #43965]	mannose ChEBI	-	assimilation
[Ref.: #43965]	myo-inositol ChEBI	-	carbon source
[Ref.: #43965]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43965]	nitrate ChEBI	+	reduction
[Ref.: #43965]	oxalate ChEBI	-	carbon source
[Ref.: #43965]	phenylacetate ChEBI	-	assimilation
[Ref.: #43965]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43965]	pyruvate ChEBI	+/-	carbon source
[Ref.: #43965]	raffinose ChEBI	-	carbon source
[Ref.: #43965]	salicin ChEBI	-	carbon source
[Ref.: #43965]	succinate ChEBI	+/-	carbon source
[Ref.: #43965]	sucrose ChEBI	-	carbon source
[Ref.: #43965]	trehalose ChEBI	+	carbon source
[Ref.: #43965]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43965]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43965]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43965]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43965]	tyrosine ChEBI	+	hydrolysis
[Ref.: #43965]	xanthine ChEBI	-	hydrolysis
[Ref.: #43965]	xylitol ChEBI	+	carbon source
[Ref.: #43965]	xylose ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43965]	amikacin ChEBI				yes	30	µg (disc)
[Ref.: #43965]	amoxicillin ChEBI	yes	10	µg (disc)
[Ref.: #43965]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43965]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43965]	cefalotin ChEBI	yes	30	µg (disc)
[Ref.: #43965]	cefoperazone ChEBI	yes	75	µg (disc)
[Ref.: #43965]	cefotaxime ChEBI	yes	30	µg (disc)
[Ref.: #43965]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #43965]	cephalexin ChEBI	yes	30	µg (disc)
[Ref.: #43965]	cephradine ChEBI				yes	30	µg (disc)
[Ref.: #43965]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43965]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43965]	co-trimoxazole ChEBI				yes	1.25	µg (disc)
[Ref.: #43965]	doxycycline ChEBI				yes	30	µg (disc)
[Ref.: #43965]	erythromycin ChEBI				yes	15	µg (disc)
[Ref.: #43965]	furazolidone ChEBI				yes	30	µg (disc)
[Ref.: #43965]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #43965]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43965]	minocycline ChEBI				yes	30	µg (disc)
[Ref.: #43965]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #43965]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43965]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #43965]	ofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43965]	penicillin g ChEBI	yes	10	Unit (disc)
[Ref.: #43965]	piperacillin ChEBI				yes	100	µg (disc)
[Ref.: #43965]	polymyxin b ChEBI				yes	30	Unit (disc)
[Ref.: #43965]	streptomycin ChEBI	yes	10	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43965]	acetoin ChEBI	no
[Ref.: #43965]	hydrogen sulfide ChEBI	no
[Ref.: #43965]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43965]		acetoin ChEBI	-
[Ref.: #43965]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43965]	acid phosphatase	+	3.1.3.2
[Ref.: #43965]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43965]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43965]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43965]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43965]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43965]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43965]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43965]	beta-galactosidase	-	3.2.1.23
[Ref.: #43965]	beta-glucosidase	-	3.2.1.21
[Ref.: #43965]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43965]	catalase	+	1.11.1.6
[Ref.: #43965]	cystine arylamidase	+	3.4.11.3
[Ref.: #43965]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43965]	esterase (C 4)	+
[Ref.: #43965]	esterase Lipase (C 8)	+
[Ref.: #43965]	gelatinase	+
[Ref.: #43965]	leucine arylamidase	+	3.4.11.1
[Ref.: #43965]	lipase (C 14)	+
[Ref.: #43965]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43965]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43965]	trypsin	-	3.4.21.4
[Ref.: #43965]	urease	+	3.5.1.5
[Ref.: #43965]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43965]	Sample type/isolated from	deep seawater of South China Sea
[Ref.: #43965]	Sampling date	2011-10
[Ref.: #43965]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #43965]	Country	China
[Ref.: #43965]	Country ISO 3 Code	CHN
[Ref.: #43965]	Continent	Asia
[Ref.: #43965]	Geographic location	19.3667°/115.6330°
[Ref.: #43965]	Enrichment culture	modified marine agar 2216
[Ref.: #43965]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43965]	Thalassobaculum fulvum strain HSF7 16S ribosomal RNA gene, partial sequence	KP976094		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thalassobaculum fulvum KCTC 42651	GCA_014652915	scaffold	GenBank ENA	1633335 tax ID	*
[Ref.: #66792]	Thalassobaculum fulvum strain KCTC 42651	1633335.3	wgs	PATRIC	1633335 tax ID	*

[Ref.: #43965]

GC-content

69 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thalassobaculum fulvum KCTC 42651 NCBI: GCA_014652915.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99.344	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	90.399	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	79.237	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	86.422	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.579	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	81.326	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thalassobaculum fulvum KCTC 42651 NCBI: GCA_014652915
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	95.8
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	68.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	91.4
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.8

Availability in culture collections External links

[Ref.: #43965]

Culture collection no.

KCTC 42651, MCCC 1K01158

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thalassobaculum fulvum sp. nov., isolated from deep seawater.	Su Y, Wang R, Sun C, Han S, Hu J, Wu D, Ma Z, Chen J, Wu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001008	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43965

Yue Su, Ruijun Wang, Cong Sun, Shuaibo Han, Jing Hu, Dildar. Wu, Zhongjun Ma, Jiawang Chen, Min Wu: Thalassobaculum fulvum sp. nov., isolated from deep seawater. IJSEM 66: 2186 - 2191 2016 ( DOI 10.1099/ijsem.0.001008 , PubMed 26956001 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Thalassobaculum fulvum KCTC 42651

Thalassobaculum fulvum KCTC 42651

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