Name: Christiangramia sediminilitoris GHTF-27
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141066

Type strain:

Species: Christiangramia sediminilitoris

Strain Designation: GHTF-27

Culture col. no.: KCTC 52208, NBRC 111992

Strain history: <- Jung-Hoon Yoon, Sungkyunkwan Univ.

NCBI tax ID(s): 1820335 (species)

Section

Christiangramia sediminilitoris GHTF-27 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from tidal flat at Goheung, South Sea, South Korea.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Christiangramia*
	Species	**Christiangramia sediminilitoris**
	Full Scientific Name (LPSN)	Christiangramia sediminilitoris (Park et al. 2016) Deshmukh and Oren 2023

Synonym

Gramella sediminilitoris

Information on morphological and physiological properties Morphology

[Ref.: #43952]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43952]	Cell length	0.3-10.0 µm

[Ref.: #43952]	Cell width	0.2-0.5 µm

[Ref.: #43952]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	ovoid-shaped

[Ref.: #43952]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #43952]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #43952]	Colony size	1.0-1.5 mm
[Ref.: #43952]	Colony color	vivid yellow
[Ref.: #43952]	Colony shape	circular
[Ref.: #43952]	Incubation period	5 days
[Ref.: #43952]	Cultivation medium used	Marine agar 2216

[Ref.: #43952]	Pigment production	no
[Ref.: #43952]	Pigment name	Flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43952]

Culture medium

Marine agar (MA)

[Ref.: #43952]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #43952]		optimum	30 °C
[Ref.: #43952]		growth	4-40 °C
[Ref.: #43952]	no	growth	45 °C
[Ref.: #67771]		growth	30 °C

[Ref.: #43952]	Temperature range	mesophilic
[Ref.: #43952]	Temperature range	thermophilic
[Ref.: #67771]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #43952]		optimum	7.0-8.0
[Ref.: #43952]		growth	5.5
[Ref.: #43952]	no	growth	5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43952]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43952]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43952]		NaCl		growth	0.5-11	%(w/v)
[Ref.: #43952]		NaCl		optimum	2.0-5.0	%(w/v)

[Ref.: #43952]	Observation	quinone Mk-6
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43952]	acetate ChEBI	-	carbon source
[Ref.: #43952]	benzoate ChEBI	-	carbon source
[Ref.: #43952]	casein	+	hydrolysis
[Ref.: #43952]	cellobiose ChEBI	+	carbon source
[Ref.: #43952]	citrate ChEBI	-	carbon source
[Ref.: #43952]	D-fructose ChEBI	+	carbon source
[Ref.: #43952]	D-galactose ChEBI	+	carbon source
[Ref.: #43952]	D-glucose ChEBI	+	carbon source
[Ref.: #43952]	D-mannose ChEBI	-	carbon source
[Ref.: #43952]	D-xylose ChEBI	-	carbon source
[Ref.: #43952]	esculin ChEBI	+	hydrolysis
[Ref.: #43952]	formate ChEBI	-	carbon source
[Ref.: #43952]	gelatin ChEBI	+	hydrolysis
[Ref.: #43952]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43952]	L-arabinose ChEBI	-	carbon source
[Ref.: #43952]	L-glutamate ChEBI	-	carbon source
[Ref.: #43952]	L-malate ChEBI	+	carbon source
[Ref.: #43952]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #43952]	magnesium(2+) ChEBI	+	growth
[Ref.: #43952]	maltose hydrate	+	carbon source
[Ref.: #43952]	nitrate ChEBI	-	reduction
[Ref.: #43952]	pyruvate ChEBI	-	carbon source
[Ref.: #43952]	salicin ChEBI	-	carbon source
[Ref.: #43952]	starch ChEBI	+	hydrolysis
[Ref.: #43952]	succinate ChEBI	-	carbon source
[Ref.: #43952]	sucrose ChEBI	+	carbon source
[Ref.: #43952]	trehalose ChEBI	+	carbon source
[Ref.: #43952]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43952]	urea ChEBI	-	hydrolysis
[Ref.: #43952]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43952]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #43952]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43952]	cefalotin ChEBI	yes	30	µg (disc)
[Ref.: #43952]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #43952]	gentamicin ChEBI				yes	30	µg (disc)
[Ref.: #43952]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43952]	lincomycin ChEBI	yes	15	µg (disc)
[Ref.: #43952]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43952]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #43952]	oleandomycin ChEBI	yes	15	µg (disc)
[Ref.: #43952]	penicillin g ChEBI				yes	20	Unit (disc)
[Ref.: #43952]	polymyxin b ChEBI				yes	100	Unit (disc)
[Ref.: #43952]	streptomycin ChEBI				yes	50	µg (disc)
[Ref.: #43952]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43952]	acid phosphatase	+	3.1.3.2
[Ref.: #43952]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43952]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43952]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43952]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43952]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43952]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43952]	beta-galactosidase	-	3.2.1.23
[Ref.: #43952]	beta-glucosidase	-	3.2.1.21
[Ref.: #43952]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43952]	catalase	+	1.11.1.6
[Ref.: #43952]	cystine arylamidase	-	3.4.11.3
[Ref.: #43952]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43952]	esterase (C 4)	+
[Ref.: #43952]	esterase Lipase (C 8)	+
[Ref.: #43952]	leucine arylamidase	+	3.4.11.1
[Ref.: #43952]	lipase (C 14)	-
[Ref.: #43952]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43952]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43952]	trypsin	-	3.4.21.4
[Ref.: #43952]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43952]

Fatty acid	Percentage
C15:0 iso	38
C17:0 iso 3OH	12
C16:1ω7c / C16:1ω6c	9.6
C15:0 anteiso	8.3
C17:1 iso ω9c	6.6
C17:0 2OH	3.1
C16:0	2.3
C15:0 iso 3OH	2.2
C16:0 iso	1.9
C15:1 iso	1.7
C15:0 2OH	1.5
C16:0 iso 3OH	1.5
C17:1 anteiso ω9c	1.3
C17:0 iso	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43952]	Sample type/isolated from	tidal flat at Goheung, South Sea, South Korea
[Ref.: #43952]	Geographic location (country and/or sea, region)	Goheung, South Sea
[Ref.: #43952]	Country	Republic of Korea
[Ref.: #43952]	Country ISO 3 Code	KOR
[Ref.: #43952]	Continent	Asia
[Ref.: #43952]	Enrichment culture	Marine agar 2216
[Ref.: #43952]	Enrichment culture temperature	25 ̊C

[Ref.: #67771]	Sample type/isolated from	From tidal flat sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	Goheung-gun on the South Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU696541 (>99% sequence identity) for Gramella from Microbeatlas

Aquatic Samples	163
Soil Samples	24
Animal Samples	1
Plant Samples
Total Samples	188

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43952]	16S rRNA gene sequence	KU696541		GenBank

[Ref.: #43952]	GC-content	39.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	39.7 mol%

Availability in culture collections External links

[Ref.: #43952]

Culture collection no.

KCTC 52208, NBRC 111992

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gramella bathymodioli sp. nov., isolated from a mussel inhabiting a hydrothermal field in the Okinawa Trough.	Liu L, Wang S, Zhou S, Sun W, Fu T, Zhang Y, Zhang XH, Yu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004488	2020	*
Phylogeny	Gramella sediminilitoris sp. nov., isolated from a tidal flat.	Park S, Yoon SY, Jung YT, Won SM, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001111	2016	*
Phylogeny	Gramella salexigens sp. nov., isolated from seawater.	Shin SK, Kim E, Yi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002850	2018	*
Phylogeny	Gramella sediminis sp. nov., isolated from a tidal flat of the Yellow Sea.	Niu HJ, Dong KS, Guan L, Sun LP, Wang Q, Zhang YJ, Li Y, Xia CQ, Pei CX	Int J Syst Evol Microbiol	10.1099/ijsem.0.005621	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43952

Sooyeon Park, Sun Young Yoon, Yong-Taek Jung, Sung-Min Won, Jung-Hoon Yoon: Gramella sediminilitoris sp. nov., isolated from a tidal flat. IJSEM 66: 2704 - 2710 2016 ( DOI 10.1099/ijsem.0.001111 , PubMed 27117540 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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