Name: Christiangramia sediminilitoris GHTF-27
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 141066

Type strain:

Species: Christiangramia sediminilitoris

Strain Designation: GHTF-27

Culture col. no.: KCTC 52208, NBRC 111992

Strain history: <- Jung-Hoon Yoon, Sungkyunkwan Univ.

NCBI tax ID(s): 1820335 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Christiangramia sediminilitoris GHTF-27 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from tidal flat at Goheung, South Sea, South Korea.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Christiangramia*
	Species	**Christiangramia sediminilitoris**
	Full Scientific Name (LPSN)	Christiangramia sediminilitoris (Park et al. 2016) Deshmukh and Oren 2023

Synonym

Gramella sediminilitoris

Information on morphological and physiological properties Morphology

[Ref.: #43952]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43952]	Cell length	0.3-10.0 µm

[Ref.: #43952]	Cell width	0.2-0.5 µm

[Ref.: #43952]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	ovoid-shaped

[Ref.: #43952]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #43952]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #43952]	Colony size	1.0-1.5 mm
[Ref.: #43952]	Colony color	vivid yellow
[Ref.: #43952]	Colony shape	circular
[Ref.: #43952]	Incubation period	5 days
[Ref.: #43952]	Cultivation medium used	Marine agar 2216

[Ref.: #43952]	Pigment production	no
[Ref.: #43952]	Pigment name	Flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43952]

Culture medium

Marine agar (MA)

[Ref.: #43952]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #43952]		optimum	30 °C
[Ref.: #43952]		growth	4-40 °C
[Ref.: #43952]	negative	growth	45 °C
[Ref.: #67771]		growth	30 °C

	Kind of pH		pH
[Ref.: #43952]		optimum	7.0-8.0
[Ref.: #43952]		growth	5.5
[Ref.: #43952]	no	growth	5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43952]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43952]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43952]		NaCl		growth	0.5-11	%(w/v)
[Ref.: #43952]		NaCl		optimum	2.0-5.0	%(w/v)

[Ref.: #43952]	Observation	quinone Mk-6
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43952]	acetate ChEBI	-	carbon source
[Ref.: #43952]	benzoate ChEBI	-	carbon source
[Ref.: #43952]	casein	+	hydrolysis
[Ref.: #43952]	cellobiose ChEBI	+	carbon source
[Ref.: #43952]	citrate ChEBI	-	carbon source
[Ref.: #43952]	D-fructose ChEBI	+	carbon source
[Ref.: #43952]	D-galactose ChEBI	+	carbon source
[Ref.: #43952]	D-glucose ChEBI	+	carbon source
[Ref.: #43952]	D-mannose ChEBI	-	carbon source
[Ref.: #43952]	D-xylose ChEBI	-	carbon source
[Ref.: #43952]	esculin ChEBI	+	hydrolysis
[Ref.: #43952]	formate ChEBI	-	carbon source
[Ref.: #43952]	gelatin ChEBI	+	hydrolysis
[Ref.: #43952]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43952]	L-arabinose ChEBI	-	carbon source
[Ref.: #43952]	L-glutamate ChEBI	-	carbon source
[Ref.: #43952]	L-malate ChEBI	+	carbon source
[Ref.: #43952]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #43952]	magnesium(2+) ChEBI	+	growth
[Ref.: #43952]	maltose hydrate	+	carbon source
[Ref.: #43952]	nitrate ChEBI	-	reduction
[Ref.: #43952]	pyruvate ChEBI	-	carbon source
[Ref.: #43952]	salicin ChEBI	-	carbon source
[Ref.: #43952]	starch ChEBI	+	hydrolysis
[Ref.: #43952]	succinate ChEBI	-	carbon source
[Ref.: #43952]	sucrose ChEBI	+	carbon source
[Ref.: #43952]	trehalose ChEBI	+	carbon source
[Ref.: #43952]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43952]	urea ChEBI	-	hydrolysis
[Ref.: #43952]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43952]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #43952]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43952]	cefalotin ChEBI	yes	30	µg (disc)
[Ref.: #43952]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #43952]	gentamicin ChEBI				yes	30	µg (disc)
[Ref.: #43952]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43952]	lincomycin ChEBI	yes	15	µg (disc)
[Ref.: #43952]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43952]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #43952]	oleandomycin ChEBI	yes	15	µg (disc)
[Ref.: #43952]	penicillin g ChEBI				yes	20	Unit (disc)
[Ref.: #43952]	polymyxin b ChEBI				yes	100	Unit (disc)
[Ref.: #43952]	streptomycin ChEBI				yes	50	µg (disc)
[Ref.: #43952]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43952]	acid phosphatase	+	3.1.3.2
[Ref.: #43952]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43952]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43952]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43952]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43952]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43952]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43952]	beta-galactosidase	-	3.2.1.23
[Ref.: #43952]	beta-glucosidase	-	3.2.1.21
[Ref.: #43952]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43952]	catalase	+	1.11.1.6
[Ref.: #43952]	cystine arylamidase	-	3.4.11.3
[Ref.: #43952]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43952]	esterase (C 4)	+
[Ref.: #43952]	esterase Lipase (C 8)	+
[Ref.: #43952]	leucine arylamidase	+	3.4.11.1
[Ref.: #43952]	lipase (C 14)	-
[Ref.: #43952]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43952]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43952]	trypsin	-	3.4.21.4
[Ref.: #43952]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43952]

Fatty acid	Percentage
C15:0 iso	38
C17:0 iso 3OH	12
C16:1ω7c / C16:1ω6c	9.6
C15:0 anteiso	8.3
C17:1 iso ω9c	6.6
C17:0 2OH	3.1
C16:0	2.3
C15:0 iso 3OH	2.2
C16:0 iso	1.9
C15:1 iso	1.7
C15:0 2OH	1.5
C16:0 iso 3OH	1.5
C17:1 anteiso ω9c	1.3
C17:0 iso	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43952]	Sample type/isolated from	tidal flat at Goheung, South Sea, South Korea
[Ref.: #43952]	Geographic location (country and/or sea, region)	Goheung, South Sea
[Ref.: #43952]	Country	Republic of Korea
[Ref.: #43952]	Country ISO 3 Code	KOR
[Ref.: #43952]	Continent	Asia
[Ref.: #43952]	Enrichment culture	Marine agar 2216
[Ref.: #43952]	Enrichment culture temperature	25 ̊C

[Ref.: #67771]	Sample type/isolated from	From tidal flat sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	Goheung-gun on the South Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU696541 (>99% sequence identity) for Gramella from Microbeatlas

Aquatic Samples	163
Soil Samples	24
Animal Samples	1
Plant Samples
Total Samples	188

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43952]	Christiangramia sediminilitoris strain GHTF-27 16S ribosomal RNA gene, partial sequence	KU696541		GenBank ENA

[Ref.: #43952]	GC-content	39.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	39.7 mol%

Availability in culture collections External links

[Ref.: #43952]

Culture collection no.

KCTC 52208, NBRC 111992

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gramella bathymodioli sp. nov., isolated from a mussel inhabiting a hydrothermal field in the Okinawa Trough.	Liu L, Wang S, Zhou S, Sun W, Fu T, Zhang Y, Zhang XH, Yu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004488	2020	*
Phylogeny	Gramella sediminilitoris sp. nov., isolated from a tidal flat.	Park S, Yoon SY, Jung YT, Won SM, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001111	2016	*
Phylogeny	Gramella salexigens sp. nov., isolated from seawater.	Shin SK, Kim E, Yi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002850	2018	*
Phylogeny	Gramella sediminis sp. nov., isolated from a tidal flat of the Yellow Sea.	Niu HJ, Dong KS, Guan L, Sun LP, Wang Q, Zhang YJ, Li Y, Xia CQ, Pei CX	Int J Syst Evol Microbiol	10.1099/ijsem.0.005621	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43952

Sooyeon Park, Sun Young Yoon, Yong-Taek Jung, Sung-Min Won, Jung-Hoon Yoon: Gramella sediminilitoris sp. nov., isolated from a tidal flat. IJSEM 66: 2704 - 2710 2016 ( DOI 10.1099/ijsem.0.001111 , PubMed 27117540 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Gramella sediminilitoris in external resources:
SILVA
BRENDA
PANGAEA
GBIF