Flavobacterium tyrosinilyticum (KCTC 42726, CCTCC AB 2015295, THG-DN8.8)

Name: Flavobacterium tyrosinilyticum (KCTC 42726, CCTCC AB 2015295, THG-DN8.8)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141064

Type strain

Strain Designation THG-DN8.8

Culture col. no. KCTC 42726 CCTCC AB 2015295 THG-DN8.8

NCBI tax ID(s) 1658740

Special Collections KCTC Literature strains

History <- Tae-Hoo Yi, Kyung Hee Univ.

Links

Flavobacterium tyrosinilyticum THG-DN8.8 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from rhizosphere of a wild strawberry plant, located on Gyeryong Mountain, Daejeon, Republic of Korea.

Gram-negative motile rod-shaped colony-forming facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 287905

KCTC 42726

@ref 20215

Last LPSN update 2026-02-09 11:33:48

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium tyrosinilyticum

Full scientific name Flavobacterium tyrosinilyticum Du and Yi 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
43950	negative	1.4-2.7 µm	0.3-0.5 µm	rod-shaped
67771				rod-shaped
67771	negative
125438					91
125438	negative				98.182

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
43950	0.5-1.5 mm	bright yellow	circular	Nutrient agar

Pigmentation

@ref	Production	Name
43950		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
43950	LB (Luria-Bertani) MEDIUM
43950	Nutrient agar (NA)
43950	Reasoner's 2A agar (R2A)
43950	Tryptone soya agar
43950	MacConkey agar
43950	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)
43950	positive	growth	4-33
43950	positive	optimum	24-28
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
43950	positive	growth	5.5-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43950	facultative anaerobe
67771	facultative anaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43950	NaCl	positive	growth	0-2 %(w/v)

Observation

67771

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43950	16808 ChEBI	2-dehydro-D-gluconate	-	carbon source
43950	16193 ChEBI	3-hydroxybenzoate	-	carbon source
43950	37054 ChEBI	3-hydroxybutyrate	-	carbon source
43950	17879 ChEBI	4-hydroxybenzoate	-	carbon source
43950	58143 ChEBI	5-dehydro-D-gluconate	-	carbon source
43950	17128 ChEBI	adipate	-	assimilation
43950	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43950		casein	+	hydrolysis
43950	17029 ChEBI	chitin	-	hydrolysis
43950	16947 ChEBI	citrate	-	assimilation
43950	17634 ChEBI	D-glucose	+	assimilation
43950	17634 ChEBI	D-glucose	+	carbon source
43950	16899 ChEBI	D-mannitol	-	assimilation
43950	16899 ChEBI	D-mannitol	-	carbon source
43950	16024 ChEBI	D-mannose	+	assimilation
43950	16988 ChEBI	D-ribose	-	carbon source
43950	17924 ChEBI	D-sorbitol	-	carbon source
43950	27689 ChEBI	decanoate	-	assimilation
43950	27689 ChEBI	decanoate	-	carbon source
43950	16991 ChEBI	dna	-	hydrolysis
43950	24265 ChEBI	gluconate	-	assimilation
43950	17234 ChEBI	glucose	-	builds acid from
43950	28087 ChEBI	glycogen	+	carbon source
43950	17240 ChEBI	itaconate	-	carbon source
43950		L-alanine 4-nitroanilide	-	carbon source
43950	30849 ChEBI	L-arabinose	+	assimilation
43950	30849 ChEBI	L-arabinose	+	carbon source
43950	18287 ChEBI	L-fucose	+	carbon source
43950	15971 ChEBI	L-histidine	-	carbon source
43950	17203 ChEBI	L-proline	+	carbon source
43950	62345 ChEBI	L-rhamnose	+	carbon source
43950	17115 ChEBI	L-serine	+	carbon source
43950	17895 ChEBI	L-tyrosine	+	hydrolysis
43950	24996 ChEBI	lactate	-	carbon source
43950	25115 ChEBI	malate	-	assimilation
43950	17306 ChEBI	maltose	+	assimilation
43950		maltose hydrate	+	carbon source
43950	28053 ChEBI	melibiose	+	carbon source
43950	17268 ChEBI	myo-inositol	-	carbon source
43950	506227 ChEBI	N-acetylglucosamine	+	assimilation
43950	506227 ChEBI	N-acetylglucosamine	+	carbon source
43950	17632 ChEBI	nitrate	-	reduction
43950	18401 ChEBI	phenylacetate	-	assimilation
43950	17272 ChEBI	propionate	-	carbon source
43950	17814 ChEBI	salicin	+	carbon source
43950	32954 ChEBI	sodium acetate	+	carbon source
43950	53258 ChEBI	sodium citrate	-	carbon source
43950	62983 ChEBI	sodium malonate	-	carbon source
43950	28017 ChEBI	starch	-	hydrolysis
43950	9300 ChEBI	suberic acid	-	carbon source
43950	17992 ChEBI	sucrose	-	carbon source
43950	53424 ChEBI	tween 20	+	hydrolysis
43950	53426 ChEBI	tween 80	-	hydrolysis
43950	31011 ChEBI	valerate	-	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43950	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43950	acid phosphatase	+	3.1.3.2
43950	alkaline phosphatase	+	3.1.3.1
43950	alpha-chymotrypsin	+	3.4.21.1
43950	alpha-fucosidase	-	3.2.1.51
43950	alpha-galactosidase	-	3.2.1.22
43950	alpha-glucosidase	+	3.2.1.20
43950	alpha-mannosidase	-	3.2.1.24
43950	arginine dihydrolase	-	3.5.3.6
43950	beta-galactosidase	+	3.2.1.23
43950	beta-glucosidase	+	3.2.1.21
43950	beta-glucuronidase	-	3.2.1.31
43950	catalase	+	1.11.1.6
43950	cystine arylamidase	+	3.4.11.3
43950	cytochrome oxidase	+	1.9.3.1
43950	esterase (C 4)	+
43950	esterase Lipase (C 8)	+
43950	leucine arylamidase	+	3.4.11.1
43950	lipase (C 14)	-
43950	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43950	naphthol-AS-BI-phosphohydrolase	+
43950	protease	-
43950	trypsin	+/-	3.4.21.4
43950	urease	-	3.5.1.5
43950	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
43950	rhizosphere of a wild strawberry plant, located on Gyeryong Mountain, Daejeon, Republic of Korea	Gyeryong Mountain, Daejeon	Republic of Korea	KOR	Asia	Nutrient agar	3 days	28
67771	From rhizosphere of a wild strawberry plant in the forest	Daejeon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KR232271 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	36
Soil Samples	27
Animal Samples	7
Plant Samples	8
Total Samples	78

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2365656v1 assembly for Flavobacterium tyrosinilyticum KCTC 42726	scaffold	GCA_023656565	1658740.3	8055419101	1658740	77.14

16S sequences

@ref	Description	Accession	Database
43950	Flavobacterium tyrosinilyticum strain THG-DN8.8 16S ribosomal RNA gene, partial sequence	KR232271

GC content

@ref	GC-content (mol%)	Method
43950	39.1	high performance liquid chromatography (HPLC)
67771	39.1

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium tyrosinilyticum KCTC 42726
NCBI: GCA_023656565.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.18	no
125438	anaerobic	anaerobicⓘ	no	98.51	yes
125438	aerobic	aerobicⓘ	yes	87.99	no
125438	spore-forming	spore-formingⓘ	no	85.77	no
125438	thermophilic	thermophileⓘ	no	98.97	no
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Flavobacterium humidisoli sp. nov., isolated from riverside soil.	Ra JS, Oh ET, Han JH, Kim SB.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005756	2023
Phylogeny	Flavobacterium chungangensis sp. nov., a Bacterium Isolated from Soil of Chinese Cabbage Garden.	Huq MA, Akter S, Lee SY	Curr Microbiol	10.1007/s00284-018-1456-6	2018
Phylogeny	Flavobacterium tyrosinilyticum sp. nov., isolated from the rhizosphere of wild strawberry.	Du J, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001104	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43950	Juan Du, Tae-Hoo Yi: Flavobacterium tyrosinilyticum sp. nov., isolated from the rhizosphere of wild strawberry. IJSEM 66: 2629 - 2634 2016 ( DOI 10.1099/ijsem.0.001104 , PubMed 27098975 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium tyrosinilyticum (KCTC 42726, CCTCC AB 2015295, THG-DN8.8)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_023656565

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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