Name: Sphingomonas faucium E62-3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 141059

Type strain:

Species: Sphingomonas faucium

Strain Designation: E62-3

Culture col. no.: KCTC 42834, CCTCC AB 2015300

NCBI tax ID(s): 1762886 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Sphingomonas faucium E62-3 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from soil of Enshi Grand Canyon, Hubei province, PR China.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas faucium**
	Full Scientific Name (LPSN)	Sphingomonas faucium Liu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43938]	Gram stain	negative

[Ref.: #43938]	Cell length	0.7-1.1 µm

[Ref.: #43938]	Cell width	0.4-0.5 µm

[Ref.: #43938]	Cell shape	rod-shaped

[Ref.: #43938]	Motility	no

[Ref.: #43938]	Colony color	yellow
[Ref.: #43938]	Colony shape	circular
[Ref.: #43938]	Incubation period	3 days
[Ref.: #43938]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

1/10 tryptic soy agar

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43938]			growth	15-37 °C
[Ref.: #43938]			optimum	28 °C

	pH	Kind of pH		pH
[Ref.: #43938]			optimum	7
[Ref.: #43938]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43938]		NaCl		growth	0-0.5	%(w/v)

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Observation

quinone Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43938]	acetate ChEBI	-	assimilation
[Ref.: #43938]	casein	-	hydrolysis
[Ref.: #43938]	D-glucose ChEBI	+	assimilation
[Ref.: #43938]	D-ribose ChEBI	+	builds acid from
[Ref.: #43938]	D-xylose ChEBI	+	builds acid from
[Ref.: #43938]	dna ChEBI	+	hydrolysis
[Ref.: #43938]	esculin ChEBI	+	hydrolysis
[Ref.: #43938]	ethanol ChEBI	-	builds acid from
[Ref.: #43938]	gelatin ChEBI	-	hydrolysis
[Ref.: #43938]	gluconate ChEBI	-	assimilation
[Ref.: #43938]	glucose ChEBI	-	fermentation
[Ref.: #43938]	L-alanine ChEBI	-	assimilation
[Ref.: #43938]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43938]	L-histidine ChEBI	-	assimilation
[Ref.: #43938]	L-proline ChEBI	-	assimilation
[Ref.: #43938]	L-rhamnose ChEBI	+	assimilation
[Ref.: #43938]	lactate ChEBI	-	assimilation
[Ref.: #43938]	lactose ChEBI	-	builds acid from
[Ref.: #43938]	maltose ChEBI	-	assimilation
[Ref.: #43938]	melibiose ChEBI	+	assimilation
[Ref.: #43938]	nitrate ChEBI	-	reduction
[Ref.: #43938]	propionate ChEBI	-	assimilation
[Ref.: #43938]	salicin ChEBI	-	assimilation
[Ref.: #43938]	starch ChEBI	-	hydrolysis
[Ref.: #43938]	sucrose ChEBI	-	assimilation
[Ref.: #43938]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43938]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43938]	valerate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #43938]	carbenicillin ChEBI	yes
[Ref.: #43938]	cefoperazone ChEBI	yes
[Ref.: #43938]	ceftazidime ChEBI	yes
[Ref.: #43938]	ceftriaxone ChEBI	yes
[Ref.: #43938]	cefuroxime ChEBI	yes
[Ref.: #43938]	cephalosporin ChEBI	yes
[Ref.: #43938]	clindamycin ChEBI		yes
[Ref.: #43938]	doxycycline ChEBI	yes
[Ref.: #43938]	erythromycin ChEBI	yes
[Ref.: #43938]	furazolidone ChEBI		yes
[Ref.: #43938]	minocycline ChEBI	yes
[Ref.: #43938]	neomycin ChEBI	yes
[Ref.: #43938]	norfloxacin ChEBI	yes
[Ref.: #43938]	ofloxacin ChEBI	yes
[Ref.: #43938]	oxacillin ChEBI		yes
[Ref.: #43938]	penicillin ChEBI	yes
[Ref.: #43938]	piperacillin ChEBI	yes
[Ref.: #43938]	sulfamethoxazole ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43938]	acetoin ChEBI	no
[Ref.: #43938]	hydrogen sulfide ChEBI	no
[Ref.: #43938]	indole ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43938]		acetoin ChEBI	-
[Ref.: #43938]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43938]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43938]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43938]	beta-galactosidase	+	3.2.1.23
[Ref.: #43938]	beta-glucosidase	-	3.2.1.21
[Ref.: #43938]	catalase	+	1.11.1.6
[Ref.: #43938]	cystine arylamidase	-	3.4.11.3
[Ref.: #43938]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43938]	lipase (C 14)	-
[Ref.: #43938]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43938]	trypsin	-	3.4.21.4
[Ref.: #43938]	urease	+	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43938]

Fatty acid	Percentage
C18:1ω7c	36.4
C16:1ω7c / C15:0 iso 2OH	24.5
C16:0	14.7
C14:0 2OH	8.9
11-methyl C18:1ω7c	6.4
C14:0	2.3
C16:1ω5c	1.8
C17:1ω6c	1.7
C19:0ω8c cyclo	1.2
C18:1ω5c	0.5
C15:0	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43938]	Sample type/isolated from	soil of Enshi Grand Canyon, Hubei province, PR China
[Ref.: #43938]	Geographic location (country and/or sea, region)	Enshi Grand Canyon, Hubei province
[Ref.: #43938]	Country	China
[Ref.: #43938]	Country ISO 3 Code	CHN
[Ref.: #43938]	Continent	Asia
[Ref.: #43938]	Geographic location	30.4000°/109.3000°
[Ref.: #43938]	Enrichment culture	1/10 tryptic soy agar
[Ref.: #43938]	Enrichment culture duration	1 week
[Ref.: #43938]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU179043 (>99% sequence identity) for Sphingomonas from Microbeatlas

Aquatic Samples	13
Soil Samples	19
Animal Samples	14
Plant Samples	19
Total Samples	65

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43938]	Sphingomonas faucium strain E62-3 16S ribosomal RNA gene, partial sequence	KU179043		GenBank ENA

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GC-content

66.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43938]

Culture collection no.

KCTC 42834, CCTCC AB 2015300

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas montis sp. nov., Isolated from Forest Soil of Low-Altitude Mountain.	Chaudhary DK, Dahal RH, Kim J	Curr Microbiol	10.1007/s00284-018-1524-y	2018	*
Phylogeny	Sphingomonas colocasiae sp. nov., isolated from taro (Colocasia esculanta).	Lin SY, Hameed A, Hsu YH, Liu YC, Hung MH, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.002471	2017	*
Phylogeny	Sphingomonas faucium sp. nov., isolated from canyon soil.	Liu D, Jin X, Sun X, Song Y, Feng L, Wang G, Li M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001064	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43938

Dongmei Liu, Xin Jin, Xuelian Sun, Yali Song, Liling Feng, Gejiao Wang, Mingshun Li: Sphingomonas faucium sp. nov., isolated from canyon soil. IJSEM 66: 2847 - 2852 2016 ( DOI 10.1099/ijsem.0.001064 , PubMed 27054358 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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