Cypionkella aquatica (CGMCC 1.14433, KCTC 52040, DC2N1-10)

Name: Cypionkella aquatica (CGMCC 1.14433, KCTC 52040, DC2N1-10)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141058

Type strain

Strain Designation DC2N1-10

Culture col. no. CGMCC 1.14433 KCTC 52040 DC2N1-10

NCBI tax ID(s) 1756042

Special Collections KCTC Literature strains

Links

Cypionkella aquatica DC2N1-10 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Dichi Crater Lake of the Daxing´anling Mountains, northern China.

Gram-negative rod-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28046

KCTC 52040

@ref 20215

Last LPSN update 2026-02-09 11:33:48

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Cypionkella

Species Cypionkella aquatica

Full scientific name Cypionkella aquatica (Li et al. 2016) Hördt et al. 2020

Synonyms (1)

Pseudorhodobacter aquaticus

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43937	negative	1.6-2.0 µm	0.6-0.8 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
43937	2.0-2.5 mm	cream	circular	Peptone yeast glucose agar

Pigmentation

@ref	Production	Name
43937		bacteriochlorophyll a

Culture and growth conditions

Culture medium

@ref	Name	Growth
43937	Peptone yeast glucose agar

Culture temp

@ref	Growth	Type	Temperature (°C)
43937	positive	growth	4-30
43937	positive	optimum	20-25

Culture pH

@ref	Ability	Type	PH
43937	positive	optimum	7
43937	positive	growth	6.0-7.5

Physiology and metabolism

Oxygen tolerance

43937

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43937	NaCl	positive	growth	0-0.5 %(w/v)
43937	NaCl	positive	optimum	0 %(w/v)

Observation

43937

Observationquinone Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43937	16651 ChEBI	(S)-lactate	+	oxidation
43937	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
43937	64552 ChEBI	2-hydroxybutyrate	+	oxidation
43937	58143 ChEBI	5-dehydro-D-gluconate	-	builds acid from
43937	30089 ChEBI	acetate	+	oxidation
43937	13705 ChEBI	acetoacetate	+	oxidation
43937	27613 ChEBI	amygdalin	-	builds acid from
43937	18305 ChEBI	arbutin	-	builds acid from
43937	73706 ChEBI	bromosuccinate	+	oxidation
43937	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43937		casein	-	hydrolysis
43937	17057 ChEBI	cellobiose	+	builds acid from
43937	17057 ChEBI	cellobiose	+	oxidation
43937	16947 ChEBI	citrate	-	carbon source
43937	17108 ChEBI	D-arabinose	-	builds acid from
43937	18333 ChEBI	D-arabitol	-	builds acid from
43937	18333 ChEBI	D-arabitol	+	oxidation
43937	15824 ChEBI	D-fructose	+	builds acid from
43937	28847 ChEBI	D-fucose	+	oxidation
43937	28847 ChEBI	D-fucose	+/-	builds acid from
43937	12936 ChEBI	D-galactose	+/-	builds acid from
43937	17634 ChEBI	D-glucose	+	builds acid from
43937	62318 ChEBI	D-lyxose	+	builds acid from
43937	15588 ChEBI	D-malate	+	oxidation
43937	16899 ChEBI	D-mannitol	+	oxidation
43937	16024 ChEBI	D-mannose	-	builds acid from
43937	16988 ChEBI	D-ribose	+	builds acid from
43937	16523 ChEBI	D-serine	+	oxidation
43937	17924 ChEBI	D-sorbitol	+	oxidation
43937	16443 ChEBI	D-tagatose	-	builds acid from
43937	65327 ChEBI	D-xylose	+	builds acid from
43937	23652 ChEBI	dextrin	+	oxidation
43937	17113 ChEBI	erythritol	+	builds acid from
43937	4853 ChEBI	esculin	+/-	hydrolysis
43937		esculin ferric citrate	+	builds acid from
43937	15740 ChEBI	formate	+	oxidation
43937	16813 ChEBI	galactitol	-	builds acid from
43937	16865 ChEBI	gamma-aminobutyric acid	+	oxidation
43937	5291 ChEBI	gelatin	-	hydrolysis
43937	28066 ChEBI	gentiobiose	-	builds acid from
43937	28066 ChEBI	gentiobiose	+	oxidation
43937	24265 ChEBI	gluconate	-	builds acid from
43937	17234 ChEBI	glucose	-	fermentation
43937	15978 ChEBI	glycerol 3-phosphate	+	builds acid from
43937	70744 ChEBI	glycine-proline	+	oxidation
43937	28087 ChEBI	glycogen	-	builds acid from
43937	13643 ChEBI	glycol	-	builds acid from
43937	17596 ChEBI	inosine	+	oxidation
43937	16977 ChEBI	L-alanine	+	oxidation
43937	30849 ChEBI	L-arabinose	+	builds acid from
43937	18403 ChEBI	L-arabitol	-	builds acid from
43937	16467 ChEBI	L-arginine	+	oxidation
43937	29991 ChEBI	L-aspartate	+	oxidation
43937	18287 ChEBI	L-fucose	+	oxidation
43937	18287 ChEBI	L-fucose	+/-	builds acid from
43937	29985 ChEBI	L-glutamate	+	oxidation
43937	15971 ChEBI	L-histidine	+	oxidation
43937	15589 ChEBI	L-malate	+	oxidation
43937	62345 ChEBI	L-rhamnose	+	builds acid from
43937	62345 ChEBI	L-rhamnose	+	oxidation
43937	17115 ChEBI	L-serine	+	oxidation
43937	17266 ChEBI	L-sorbose	-	builds acid from
43937	65328 ChEBI	L-xylose	+/-	builds acid from
43937	17716 ChEBI	lactose	-	builds acid from
43937	17306 ChEBI	maltose	+	builds acid from
43937	17306 ChEBI	maltose	+	oxidation
43937	6731 ChEBI	melezitose	+/-	builds acid from
43937	28053 ChEBI	melibiose	+	builds acid from
43937	28053 ChEBI	melibiose	+	oxidation
43937	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
43937	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
43937	320055 ChEBI	methyl beta-D-glucopyranoside	+	oxidation
43937	74863 ChEBI	methyl beta-D-xylopyranoside	+/-	builds acid from
43937	51850 ChEBI	methyl pyruvate	+	oxidation
43937	17268 ChEBI	myo-inositol	-	builds acid from
43937	17268 ChEBI	myo-inositol	+	oxidation
43937	506227 ChEBI	N-acetylglucosamine	-	builds acid from
43937	17632 ChEBI	nitrate	+	reduction
43937	17309 ChEBI	pectin	+	oxidation
43937	17272 ChEBI	propionate	+	oxidation
43937	16634 ChEBI	raffinose	-	builds acid from
43937	15963 ChEBI	ribitol	+	builds acid from
43937	17814 ChEBI	salicin	+	builds acid from
43937	17814 ChEBI	salicin	+	oxidation
43937	30911 ChEBI	sorbitol	+	builds acid from
43937	28017 ChEBI	starch	-	builds acid from
43937	28017 ChEBI	starch	+/-	hydrolysis
43937	17992 ChEBI	sucrose	+	builds acid from
43937	17992 ChEBI	sucrose	+	oxidation
43937		synanthrin	-	builds acid from
43937	27082 ChEBI	trehalose	+	builds acid from
43937	27082 ChEBI	trehalose	+	oxidation
43937	32528 ChEBI	turanose	-	builds acid from
43937	32528 ChEBI	turanose	+	oxidation
43937	53424 ChEBI	tween 20	+	hydrolysis
43937	53425 ChEBI	tween 60	+	hydrolysis
43937	53426 ChEBI	tween 80	-	hydrolysis
43937	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
43937	15688 ChEBI	acetoin
43937	16136 ChEBI	hydrogen sulfide
43937	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
43937	15688 ChEBI	acetoin	+

Enzymes

@ref	Value	Activity	Ec
43937	6-phospho-beta-galactosidase	+	3.2.1.85
43937	acid phosphatase	+	3.1.3.2
43937	alkaline phosphatase	+	3.1.3.1
43937	alpha-chymotrypsin	-	3.4.21.1
43937	alpha-fucosidase	-	3.2.1.51
43937	alpha-galactosidase	+/-	3.2.1.22
43937	alpha-glucosidase	+	3.2.1.20
43937	alpha-mannosidase	-	3.2.1.24
43937	beta-galactosidase	+	3.2.1.23
43937	beta-glucosidase	+	3.2.1.21
43937	beta-glucuronidase	-	3.2.1.31
43937	catalase	+	1.11.1.6
43937	cystine arylamidase	+	3.4.11.3
43937	cytochrome oxidase	+	1.9.3.1
43937	DNase	-
43937	esterase	+
43937	esterase Lipase (C 8)	+
43937	leucine arylamidase	+	3.4.11.1
43937	lipase (C 14)	-
43937	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43937	naphthol-AS-BI-phosphohydrolase	+
43937	trypsin	-	3.4.21.4
43937	valine arylamidase	+/-

Fatty acid profile

Metadata FA analysis

@ref

43937

Fatty acid	Percentage
C18:1ω7c	85.5
11-methyl C18:1ω7c	4.2
C10:0 3OH	3.8
C18:0 3OH	2.2
C18:0	1
C16:0	0.9
unknown 18.846 / C19:1ω7c	0.9
10-methyl C19:0	0.6
C16:1ω7c / C16:1ω6c	0.5
C17:1ω8c	0.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
43937	Dichi Crater Lake of the Daxing´anling Mountains, northern China	Yueliang Crater Lake, Daxing´anling Mountains	China	CHN	Asia	R2A agar	2 weeks	15

Taxonmaps

69479

Global distribution of 16S sequence KT985057 (>99% sequence identity) for Cypionkella from Microbeatlas

Aquatic Samples	2894
Soil Samples	192
Animal Samples	115
Plant Samples	132
Total Samples	3333

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
43937	Cypionkella aquatica strain DC2N1-10 16S ribosomal RNA gene, partial sequence	KT985057

GC content

@ref	GC-content (mol%)	Method
43937	60	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria.	Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M.	Front Microbiol	10.3389/fmicb.2020.00468	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43937	Ai-Hua Li, Hong-Can Liu, Wei-Guo Hou, Yu-Guang Zhou: Pseudorhodobacter sinensis sp. nov. and Pseudorhodobacter aquaticus sp. nov., isolated from crater lakes. IJSEM 66: 2819 - 2824 2016 ( DOI 10.1099/ijsem.0.001061 , PubMed 27045957 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cypionkella aquatica (CGMCC 1.14433, KCTC 52040, DC2N1-10)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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