Name: Cypionkella aquatica DC2N1-10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141058

Type strain:

Species: Cypionkella aquatica

Strain Designation: DC2N1-10

Culture col. no.: CGMCC 1.14433, KCTC 52040

NCBI tax ID(s): 1756042 (species)

Section

Cypionkella aquatica DC2N1-10 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Dichi Crater Lake of the Daxing´anling Mountains, northern China.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Cypionkella*
	Species	**Cypionkella aquatica**
	Full Scientific Name (LPSN)	Cypionkella aquatica (Li et al. 2016) Hördt et al. 2020

Synonym

Pseudorhodobacter aquaticus

Information on morphological and physiological properties Morphology

[Ref.: #43937]	Gram stain	negative

[Ref.: #43937]	Cell length	1.6-2.0 µm

[Ref.: #43937]	Cell width	0.6-0.8 µm

[Ref.: #43937]	Cell shape	rod-shaped

[Ref.: #43937]	Motility	no

[Ref.: #43937]	Colony size	2.0-2.5 mm
[Ref.: #43937]	Colony color	cream
[Ref.: #43937]	Colony shape	circular
[Ref.: #43937]	Cultivation medium used	Peptone yeast glucose agar

[Ref.: #43937]	Pigment production	yes
[Ref.: #43937]	Pigment name	Bacteriochlorophyll alpha

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43937]

Culture medium

Peptone yeast glucose agar

[Ref.: #43937]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43937]			growth	4-30 °C
[Ref.: #43937]			optimum	20-25 °C

	pH	Kind of pH		pH
[Ref.: #43937]			optimum	7
[Ref.: #43937]			growth	6.0-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43937]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43937]		NaCl		growth	0-0.5	%(w/v)
[Ref.: #43937]		NaCl		optimum	0	%(w/v)

[Ref.: #43937]

Observation

quinone Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43937]	(S)-lactate ChEBI	+	oxidation
[Ref.: #43937]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43937]	2-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #43937]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43937]	acetate ChEBI	+	oxidation
[Ref.: #43937]	acetoacetate ChEBI	+	oxidation
[Ref.: #43937]	amygdalin ChEBI	-	builds acid from
[Ref.: #43937]	arbutin ChEBI	-	builds acid from
[Ref.: #43937]	bromosuccinate ChEBI	+	oxidation
[Ref.: #43937]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43937]	casein	-	hydrolysis
[Ref.: #43937]	cellobiose ChEBI	+	builds acid from
[Ref.: #43937]	cellobiose ChEBI	+	oxidation
[Ref.: #43937]	citrate ChEBI	-	carbon source
[Ref.: #43937]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43937]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43937]	D-arabitol ChEBI	+	oxidation
[Ref.: #43937]	D-fructose ChEBI	+	builds acid from
[Ref.: #43937]	D-fucose ChEBI	+	oxidation
[Ref.: #43937]	D-fucose ChEBI	+/-	builds acid from
[Ref.: #43937]	D-galactose ChEBI	+/-	builds acid from
[Ref.: #43937]	D-glucose ChEBI	+	builds acid from
[Ref.: #43937]	D-lyxose ChEBI	+	builds acid from
[Ref.: #43937]	D-malate ChEBI	+	oxidation
[Ref.: #43937]	D-mannitol ChEBI	+	oxidation
[Ref.: #43937]	D-mannose ChEBI	-	builds acid from
[Ref.: #43937]	D-ribose ChEBI	+	builds acid from
[Ref.: #43937]	D-serine ChEBI	+	oxidation
[Ref.: #43937]	D-sorbitol ChEBI	+	oxidation
[Ref.: #43937]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43937]	D-xylose ChEBI	+	builds acid from
[Ref.: #43937]	dextrin ChEBI	+	oxidation
[Ref.: #43937]	erythritol ChEBI	+	builds acid from
[Ref.: #43937]	esculin ChEBI	+/-	hydrolysis
[Ref.: #43937]	esculin ferric citrate	+	builds acid from
[Ref.: #43937]	formate ChEBI	+	oxidation
[Ref.: #43937]	galactitol ChEBI	-	builds acid from
[Ref.: #43937]	gamma-aminobutyric acid ChEBI	+	oxidation
[Ref.: #43937]	gelatin ChEBI	-	hydrolysis
[Ref.: #43937]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43937]	gentiobiose ChEBI	+	oxidation
[Ref.: #43937]	gluconate ChEBI	-	builds acid from
[Ref.: #43937]	glucose ChEBI	-	fermentation
[Ref.: #43937]	glycerol 3-phosphate ChEBI	+	builds acid from
[Ref.: #43937]	glycine-proline ChEBI	+	oxidation
[Ref.: #43937]	glycogen ChEBI	-	builds acid from
[Ref.: #43937]	glycol ChEBI	-	builds acid from
[Ref.: #43937]	inosine ChEBI	+	oxidation
[Ref.: #43937]	L-alanine ChEBI	+	oxidation
[Ref.: #43937]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43937]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43937]	L-arginine ChEBI	+	oxidation
[Ref.: #43937]	L-aspartate ChEBI	+	oxidation
[Ref.: #43937]	L-fucose ChEBI	+	oxidation
[Ref.: #43937]	L-fucose ChEBI	+/-	builds acid from
[Ref.: #43937]	L-glutamate ChEBI	+	oxidation
[Ref.: #43937]	L-histidine ChEBI	+	oxidation
[Ref.: #43937]	L-malate ChEBI	+	oxidation
[Ref.: #43937]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #43937]	L-rhamnose ChEBI	+	oxidation
[Ref.: #43937]	L-serine ChEBI	+	oxidation
[Ref.: #43937]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43937]	L-xylose ChEBI	+/-	builds acid from
[Ref.: #43937]	lactose ChEBI	-	builds acid from
[Ref.: #43937]	maltose ChEBI	+	builds acid from
[Ref.: #43937]	maltose ChEBI	+	oxidation
[Ref.: #43937]	melezitose ChEBI	+/-	builds acid from
[Ref.: #43937]	melibiose ChEBI	+	builds acid from
[Ref.: #43937]	melibiose ChEBI	+	oxidation
[Ref.: #43937]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43937]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43937]	methyl beta-D-glucopyranoside ChEBI	+	oxidation
[Ref.: #43937]	methyl beta-D-xylopyranoside ChEBI	+/-	builds acid from
[Ref.: #43937]	methyl pyruvate ChEBI	+	oxidation
[Ref.: #43937]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43937]	myo-inositol ChEBI	+	oxidation
[Ref.: #43937]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43937]	nitrate ChEBI	+	reduction
[Ref.: #43937]	pectin ChEBI	+	oxidation
[Ref.: #43937]	propionate ChEBI	+	oxidation
[Ref.: #43937]	raffinose ChEBI	-	builds acid from
[Ref.: #43937]	ribitol ChEBI	+	builds acid from
[Ref.: #43937]	salicin ChEBI	+	builds acid from
[Ref.: #43937]	salicin ChEBI	+	oxidation
[Ref.: #43937]	sorbitol ChEBI	+	builds acid from
[Ref.: #43937]	starch ChEBI	-	builds acid from
[Ref.: #43937]	starch ChEBI	+/-	hydrolysis
[Ref.: #43937]	sucrose ChEBI	+	builds acid from
[Ref.: #43937]	sucrose ChEBI	+	oxidation
[Ref.: #43937]	synanthrin	-	builds acid from
[Ref.: #43937]	trehalose ChEBI	+	builds acid from
[Ref.: #43937]	trehalose ChEBI	+	oxidation
[Ref.: #43937]	turanose ChEBI	-	builds acid from
[Ref.: #43937]	turanose ChEBI	+	oxidation
[Ref.: #43937]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43937]	tween 60 ChEBI	+	hydrolysis
[Ref.: #43937]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43937]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43937]	acetoin ChEBI	yes
[Ref.: #43937]	hydrogen sulfide ChEBI	no
[Ref.: #43937]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43937]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #43937]	6-phospho-beta-galactosidase	+	3.2.1.85
[Ref.: #43937]	acid phosphatase	+	3.1.3.2
[Ref.: #43937]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43937]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43937]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43937]	alpha-galactosidase	+/-	3.2.1.22
[Ref.: #43937]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43937]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43937]	beta-galactosidase	+	3.2.1.23
[Ref.: #43937]	beta-glucosidase	+	3.2.1.21
[Ref.: #43937]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43937]	catalase	+	1.11.1.6
[Ref.: #43937]	cystine arylamidase	+	3.4.11.3
[Ref.: #43937]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43937]	DNase	-
[Ref.: #43937]	esterase	+
[Ref.: #43937]	esterase Lipase (C 8)	+
[Ref.: #43937]	leucine arylamidase	+	3.4.11.1
[Ref.: #43937]	lipase (C 14)	-
[Ref.: #43937]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43937]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43937]	trypsin	-	3.4.21.4
[Ref.: #43937]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43937]

Fatty acid	Percentage
C18:1ω7c	85.5
11-methyl C18:1ω7c	4.2
C10:0 3OH	3.8
C18:0 3OH	2.2
C18:0	1
C16:0	0.9
unknown 18.846 / C19:1ω7c	0.9
10-methyl C19:0	0.6
C16:1ω7c / C16:1ω6c	0.5
C17:1ω8c	0.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43937]	Sample type/isolated from	Dichi Crater Lake of the Daxing´anling Mountains, northern China
[Ref.: #43937]	Geographic location (country and/or sea, region)	Yueliang Crater Lake, Daxing´anling Mountains
[Ref.: #43937]	Country	China
[Ref.: #43937]	Country ISO 3 Code	CHN
[Ref.: #43937]	Continent	Asia
[Ref.: #43937]	Enrichment culture	R2A agar
[Ref.: #43937]	Enrichment culture duration	2 weeks
[Ref.: #43937]	Enrichment culture temperature	15 ̊C
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT985057 (>99% sequence identity) for Cypionkella from Microbeatlas

Aquatic Samples	2894
Soil Samples	192
Animal Samples	115
Plant Samples	132
Total Samples	3333

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43937]	16S rRNA gene sequence	KT985057		GenBank

[Ref.: #43937]

GC-content

60 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43937]

Culture collection no.

CGMCC 1.14433, KCTC 52040

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43937

Ai-Hua Li, Hong-Can Liu, Wei-Guo Hou, Yu-Guang Zhou: Pseudorhodobacter sinensis sp. nov. and Pseudorhodobacter aquaticus sp. nov., isolated from crater lakes. IJSEM 66: 2819 - 2824 2016 ( DOI 10.1099/ijsem.0.001061 , PubMed 27045957 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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