Actibacterium ureilyticum (BCRC 80823, JCM 30681, LS-811)

Name: Actibacterium ureilyticum (BCRC 80823, JCM 30681, LS-811)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141055

Type strain

Strain Designation LS-811

Culture col. no. BCRC 80823 JCM 30681 LS-811

NCBI tax ID(s) 1590614

Special Collections JCM Literature strains

History L.-S. Young; Natl. Formosa Univ., Taiwan; LS-811.

Links

Actibacterium ureilyticum LS-811 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from seawater of the South China Sea, Taiwan.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 129296

BCRC 80823,JCM 30681

@ref 20215

Last LPSN update 2026-02-09 11:33:48

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Actibacterium

Species Actibacterium ureilyticum

Full scientific name Actibacterium ureilyticum Lin et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement	Confidence
43935	negative	1.5-1.9 µm	0.6-0.8 µm	rod-shaped		monotrichous
125439	negative						96.1

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43935	1-2 mm	white	circular	2 days	Marine agar 2216

Culture and growth conditions

Culture medium

@ref	Name	Growth
43935	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)
43935	positive	growth	15-40
43935	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
43935	positive	optimum	7
43935	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

43935

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		95.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43935	NaCl	positive	growth	1-6 %(w/v)
43935	NaCl	positive	optimum	3 %(w/v)

Observation

@ref	Observation
43935	quinone Q-10
67770	quinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43935	64552 ChEBI	2-hydroxybutyrate	+	carbon source
43935	16763 ChEBI	2-oxobutanoate	+	carbon source
43935	30916 ChEBI	2-oxoglutarate	+	carbon source
43935	28644 ChEBI	2-oxopentanoate	+	carbon source
43935	17925 ChEBI	alpha-D-glucose	+	carbon source
43935	36219 ChEBI	alpha-lactose	+	carbon source
43935	8295 ChEBI	beta-hydroxybutyrate	+	carbon source
43935	16383 ChEBI	cis-aconitate	+	carbon source
43935	16947 ChEBI	citrate	+	carbon source
43935	15570 ChEBI	D-alanine	+	carbon source
43935	15824 ChEBI	D-fructose	+	carbon source
43935	12936 ChEBI	D-galactose	+	carbon source
43935	8391 ChEBI	D-gluconate	+	carbon source
43935	17784 ChEBI	D-glucosaminic acid	+	carbon source
43935	17634 ChEBI	D-glucose	+	assimilation
43935	15748 ChEBI	D-glucuronate	+	carbon source
43935	16899 ChEBI	D-mannitol	+	carbon source
43935	17924 ChEBI	D-sorbitol	+	carbon source
43935	23652 ChEBI	dextrin	+	carbon source
43935	17113 ChEBI	erythritol	+	carbon source
43935	15740 ChEBI	formate	+	carbon source
43935	5291 ChEBI	gelatin	+/-	hydrolysis
43935	28066 ChEBI	gentiobiose	+	carbon source
43935	28087 ChEBI	glycogen	+	carbon source
43935	17596 ChEBI	inosine	+	carbon source
43935	17240 ChEBI	itaconate	+	carbon source
43935	21217 ChEBI	L-alaninamide	+	carbon source
43935	16977 ChEBI	L-alanine	+	carbon source
43935	17196 ChEBI	L-asparagine	+	carbon source
43935	15603 ChEBI	L-leucine	+	carbon source
43935	17295 ChEBI	L-phenylalanine	+	carbon source
43935	62345 ChEBI	L-rhamnose	+	carbon source
43935	17115 ChEBI	L-serine	+	carbon source
43935	6359 ChEBI	lactulose	+	carbon source
43935	17306 ChEBI	maltose	-	carbon source
43935	320055 ChEBI	methyl beta-D-glucopyranoside	+	carbon source
43935	51850 ChEBI	methyl pyruvate	+	carbon source
43935	17268 ChEBI	myo-inositol	+	carbon source
43935	28037 ChEBI	N-acetylgalactosamine	+	carbon source
43935	506227 ChEBI	N-acetylglucosamine	+	carbon source
43935	17632 ChEBI	nitrate	+	reduction
43935	143136 ChEBI	succinamate	+	carbon source
43935	27082 ChEBI	trehalose	+	carbon source
43935	32528 ChEBI	turanose	+	carbon source
43935	53423 ChEBI	tween 40	+	carbon source
43935	53426 ChEBI	tween 80	+	carbon source
43935	17151 ChEBI	xylitol	+	carbon source

Enzymes

@ref	Value	Activity	Ec
43935	acid phosphatase	+	3.1.3.2
43935	alkaline phosphatase	+	3.1.3.1
43935	alpha-mannosidase	+	3.2.1.24
43935	beta-galactosidase	-	3.2.1.23
43935	beta-glucosidase	+	3.2.1.21
43935	beta-glucosidase	-	3.2.1.21
43935	catalase	+	1.11.1.6
43935	cystine arylamidase	+	3.4.11.3
43935	cytochrome oxidase	+	1.9.3.1
43935	esterase (C 4)	+
43935	esterase Lipase (C 8)	+
43935	leucine arylamidase	+	3.4.11.1
43935	naphthol-AS-BI-phosphohydrolase	+
43935	protease	+
43935	urease	+	3.5.1.5
43935	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43935

Fatty acid	Percentage
C18:1ω7c / C18:1ω6c	66.4
C19:0ω8c cyclo	11.9
C10:0 3OH	6.9
C18:0	6
10-methyl C18:1ω7c	1.3
C16:0	1.1
C19:1ω6c,ω7c / 19cy	0.9
C20:1ω7c	0.8
C17:0	0.6
C20:2ω6c, ω9c	0.5
C12:0	0.5
C17:1 iso ω10c	0.5
C16:1ω7c / C16:1ω6c	0.5
C17:1ω6c	0.5
C15:0 iso	0.2
C11:0 iso 3OH	0.2
C19:0 iso	0.2
C13:0 anteiso	0.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
43935	seawater of the South China Sea, Taiwan	South China Sea	Taiwan, Province of China	TWN	Asia	21.6035	118.193 21.6035/118.193	Marine agar 2216	3 days	30
67770	Seawater of the South China Sea		Taiwan, Province of China	TWN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KP162062 (>99% sequence identity) for Actibacterium ureilyticum subclade from Microbeatlas

Aquatic Samples	2282
Soil Samples	106
Animal Samples	202
Plant Samples	51
Total Samples	2641

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM228543v1 assembly for Actibacterium ureilyticum LS-811	contig	GCA_002285435	1590614.3	2832212542	1590614	70.03

16S sequences

@ref	Description	Accession	Database
43935	Actibacterium ureilyticum strain LS-811 16S ribosomal RNA gene, partial sequence	KP162062

GC content

@ref	GC-content (mol%)	Method
67770	60.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actibacterium ureilyticum LS-811
NCBI: GCA_002285435

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.10	no
125439	motility	BacteriaNetⓘ	yes	59.80	no
125439	gram_stain	BacteriaNetⓘ	negative	96.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actibacterium ureilyticum sp. nov., isolated from seawater.	Lin SY, Young CC, Hameed A, Liu YC, Hsu YH, Chung WC, Young LS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001052	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43935	Shih-Yao Lin, Chiu-Chung Young, Asif Hameed, You-Cheng Liu, Yi-Han Hsu, Wei-Ching Chung, Li-Sen Young: Actibacterium ureilyticum sp. nov., isolated from seawater. IJSEM 66: 2769 - 2773 2016 ( DOI 10.1099/ijsem.0.001052 , PubMed 27031530 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actibacterium ureilyticum (BCRC 80823, JCM 30681, LS-811)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002285435

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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