Pedobacter hartonius WB3.3-3 is an obligate aerobe, Gram-negative, motile bacterium that was isolated from stream water.
Gram-negative motile rod-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Bacteroidota |
| Class Sphingobacteriia |
| Order Sphingobacteriales |
| Family Sphingobacteriaceae |
| Genus Pedobacter |
| Species Pedobacter hartonius |
| Full scientific name Pedobacter hartonius Muurholm et al. 2007 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7852 | R2A MEDIUM (DSMZ Medium 830) | Medium recipe at MediaDive | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water | ||
| 37562 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 119843 | CIP Medium 72 | Medium recipe at CIP | |||
| 119843 | CIP Medium 566 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 32230 | 22599 ChEBI | arabinose | + | carbon source | |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 32230 | 17057 ChEBI | cellobiose | + | carbon source | |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 32230 | 23652 ChEBI | dextrin | + | carbon source | |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 32230 | 4853 ChEBI | esculin | + | hydrolysis | |
| 32230 | 28757 ChEBI | fructose | + | carbon source | |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 32230 | 28260 ChEBI | galactose | + | carbon source | |
| 32230 | 5291 ChEBI | gelatin | + | carbon source | |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 32230 | 17234 ChEBI | glucose | + | carbon source | |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 32230 | 18403 ChEBI | L-arabitol | + | carbon source | |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 32230 | 17716 ChEBI | lactose | + | carbon source | |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 32230 | 17306 ChEBI | maltose | + | carbon source | |
| 32230 | 29864 ChEBI | mannitol | + | carbon source | |
| 32230 | 37684 ChEBI | mannose | + | carbon source | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 32230 | 28053 ChEBI | melibiose | + | carbon source | |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 32230 | 37657 ChEBI | methyl D-glucoside | + | carbon source | |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 32230 | 506227 ChEBI | N-acetylglucosamine | + | carbon source | |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 119843 | 17632 ChEBI | nitrate | - | reduction | |
| 119843 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 32230 | 26546 ChEBI | rhamnose | + | carbon source | |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 32230 | 17814 ChEBI | salicin | + | carbon source | |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 32230 | 27082 ChEBI | trehalose | + | carbon source | |
| 32230 | 53426 ChEBI | tween 80 | + | carbon source | |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| 32230 | 18222 ChEBI | xylose | + | carbon source |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 32230 | alkaline phosphatase | + | 3.1.3.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | + | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | + | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 32230 | catalase | + | 1.11.1.6 | |
| 119843 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 32230 | cytochrome oxidase | + | 1.9.3.1 | |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 32230 | gelatinase | + | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 119843 | oxidase | + | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 119843 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | cellulose degradation | 100 | 5 of 5 | ||
| 66794 | threonine metabolism | 100 | 10 of 10 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | butanoate fermentation | 100 | 4 of 4 | ||
| 66794 | glycogen metabolism | 100 | 5 of 5 | ||
| 66794 | valine metabolism | 100 | 9 of 9 | ||
| 66794 | acetoin degradation | 100 | 3 of 3 | ||
| 66794 | starch degradation | 100 | 10 of 10 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | molybdenum cofactor biosynthesis | 100 | 9 of 9 | ||
| 66794 | ribulose monophosphate pathway | 100 | 2 of 2 | ||
| 66794 | gluconeogenesis | 100 | 8 of 8 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | sulfopterin metabolism | 100 | 4 of 4 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | 1,4-dihydroxy-6-naphthoate biosynthesis | 100 | 6 of 6 | ||
| 66794 | pentose phosphate pathway | 100 | 11 of 11 | ||
| 66794 | Entner Doudoroff pathway | 90 | 9 of 10 | ||
| 66794 | NAD metabolism | 88.89 | 16 of 18 | ||
| 66794 | lipid A biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | serine metabolism | 88.89 | 8 of 9 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | ubiquinone biosynthesis | 85.71 | 6 of 7 | ||
| 66794 | photosynthesis | 85.71 | 12 of 14 | ||
| 66794 | tetrahydrofolate metabolism | 85.71 | 12 of 14 | ||
| 66794 | vitamin B12 metabolism | 85.29 | 29 of 34 | ||
| 66794 | vitamin B1 metabolism | 84.62 | 11 of 13 | ||
| 66794 | leucine metabolism | 84.62 | 11 of 13 | ||
| 66794 | phenylalanine metabolism | 84.62 | 11 of 13 | ||
| 66794 | degradation of sugar alcohols | 81.25 | 13 of 16 | ||
| 66794 | glycine betaine biosynthesis | 80 | 4 of 5 | ||
| 66794 | phenylacetate degradation (aerobic) | 80 | 4 of 5 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | metabolism of amino sugars and derivatives | 80 | 4 of 5 | ||
| 66794 | heme metabolism | 78.57 | 11 of 14 | ||
| 66794 | glutamate and glutamine metabolism | 78.57 | 22 of 28 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | d-mannose degradation | 77.78 | 7 of 9 | ||
| 66794 | methionine metabolism | 76.92 | 20 of 26 | ||
| 66794 | urea cycle | 76.92 | 10 of 13 | ||
| 66794 | alanine metabolism | 75.86 | 22 of 29 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | purine metabolism | 74.47 | 70 of 94 | ||
| 66794 | tryptophan metabolism | 73.68 | 28 of 38 | ||
| 66794 | flavin biosynthesis | 73.33 | 11 of 15 | ||
| 66794 | proline metabolism | 72.73 | 8 of 11 | ||
| 66794 | cysteine metabolism | 72.22 | 13 of 18 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | reductive acetyl coenzyme A pathway | 71.43 | 5 of 7 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | propionate fermentation | 70 | 7 of 10 | ||
| 66794 | isoprenoid biosynthesis | 69.23 | 18 of 26 | ||
| 66794 | pyrimidine metabolism | 68.89 | 31 of 45 | ||
| 66794 | formaldehyde oxidation | 66.67 | 2 of 3 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | arginine metabolism | 66.67 | 16 of 24 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | degradation of hexoses | 66.67 | 12 of 18 | ||
| 66794 | acetyl CoA biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | histidine metabolism | 65.52 | 19 of 29 | ||
| 66794 | lipid metabolism | 64.52 | 20 of 31 | ||
| 66794 | glutathione metabolism | 64.29 | 9 of 14 | ||
| 66794 | citric acid cycle | 64.29 | 9 of 14 | ||
| 66794 | vitamin B6 metabolism | 63.64 | 7 of 11 | ||
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | ||
| 66794 | carotenoid biosynthesis | 63.64 | 14 of 22 | ||
| 66794 | ketogluconate metabolism | 62.5 | 5 of 8 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | non-pathway related | 60.53 | 23 of 38 | ||
| 66794 | coenzyme M biosynthesis | 60 | 6 of 10 | ||
| 66794 | arachidonate biosynthesis | 60 | 3 of 5 | ||
| 66794 | gallate degradation | 60 | 3 of 5 | ||
| 66794 | lysine metabolism | 59.52 | 25 of 42 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 58.33 | 7 of 12 | ||
| 66794 | tyrosine metabolism | 57.14 | 8 of 14 | ||
| 66794 | degradation of pentoses | 57.14 | 16 of 28 | ||
| 66794 | degradation of sugar acids | 56 | 14 of 25 | ||
| 66794 | aspartate and asparagine metabolism | 55.56 | 5 of 9 | ||
| 66794 | nitrate assimilation | 55.56 | 5 of 9 | ||
| 66794 | metabolism of disaccharids | 54.55 | 6 of 11 | ||
| 66794 | phenylpropanoid biosynthesis | 53.85 | 7 of 13 | ||
| 66794 | kanosamine biosynthesis II | 50 | 1 of 2 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | myo-inositol biosynthesis | 50 | 5 of 10 | ||
| 66794 | selenocysteine biosynthesis | 50 | 3 of 6 | ||
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | ||
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | quinate degradation | 50 | 1 of 2 | ||
| 66794 | sulfate reduction | 46.15 | 6 of 13 | ||
| 66794 | ascorbate metabolism | 45.45 | 10 of 22 | ||
| 66794 | oxidative phosphorylation | 45.05 | 41 of 91 | ||
| 66794 | arachidonic acid metabolism | 44.44 | 8 of 18 | ||
| 66794 | 4-hydroxymandelate degradation | 44.44 | 4 of 9 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 41.18 | 7 of 17 | ||
| 66794 | glycine metabolism | 40 | 4 of 10 | ||
| 66794 | 3-phenylpropionate degradation | 40 | 6 of 15 | ||
| 66794 | lipoate biosynthesis | 40 | 2 of 5 | ||
| 66794 | vitamin K metabolism | 40 | 2 of 5 | ||
| 66794 | O-antigen biosynthesis | 40 | 2 of 5 | ||
| 66794 | 3-chlorocatechol degradation | 40 | 2 of 5 | ||
| 66794 | polyamine pathway | 39.13 | 9 of 23 | ||
| 66794 | chlorophyll metabolism | 38.89 | 7 of 18 | ||
| 66794 | androgen and estrogen metabolism | 37.5 | 6 of 16 | ||
| 66794 | phenol degradation | 35 | 7 of 20 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | aclacinomycin biosynthesis | 28.57 | 2 of 7 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | vitamin E metabolism | 25 | 1 of 4 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | carnitine metabolism | 25 | 2 of 8 | ||
| 66794 | allantoin degradation | 22.22 | 2 of 9 |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119843 | not determinedn.d. | - | - | - | +/- | - | +/- | - | - | - | - | +/- | +/- | +/- | - | - | - | - | - | - | - | - | - | +/- | - | +/- | - | - | +/- | - | - | - | +/- | - | - | - | +/- | - | - | +/- | +/- | +/- | - | - | +/- | +/- | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | IMG-taxon 2693429882 annotated assembly for Pedobacter hartonius DSM 19033 | scaffold | 425514 | 68.45 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 32230 | Pedobacter hartonius partial 16S rRNA gene, type strain WB3.3-3T | AM491371 | 1492 | 425514 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 89.74 | no |
| 125439 | motility | BacteriaNetⓘ | no | 77.44 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.02 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.65 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 95.75 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 97.91 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 90.40 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 83.64 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 98.49 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 87.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Pedobacter lusitanus sp. nov., isolated from sludge of a deactivated uranium mine. | Covas C, Caetano T, Cruz A, Santos T, Dias L, Klein G, Abdulmawjood A, Rodriguez-Alcala LM, Pimentel LL, Gomes A, Freitas AC, Garcia-Serrano A, Fontecha J, Mendo S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001814 | 2017 | |
| Phylogeny | Pedobacter duraquae sp. nov., Pedobacter westerhofensis sp. nov., Pedobacter metabolipauper sp. nov., Pedobacter hartonius sp. nov. and Pedobacter steynii sp. nov., isolated from a hard-water rivulet. | Muurholm S, Cousin S, Pauker O, Brambilla E, Stackebrandt E | Int J Syst Evol Microbiol | 10.1099/ijs.0.65166-0 | 2007 |
| #7852 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19033 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #28472 | IJSEM 2221 2007 ( DOI 10.1099/ijs.0.65166-0 , PubMed 17911287 ) |
| #32230 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28472 |
| #37562 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #119843 | Collection of Institut Pasteur ; Curators of the CIP; CIP 109468 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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