Name: Rhizobium esperanzae Z87-8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141049

Type strain:

Species: Rhizobium esperanzae

Strain Designation: Z87-8, U 10001

Culture col. no.: UMR 1320, LMG 30030, CNPSo 668

NCBI tax ID(s): 1967781 (species)

Section

Rhizobium esperanzae Z87-8 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Nitrogen-fixing effective root nodules of common bean in Mexico.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium esperanzae**
	Full Scientific Name (PNU)	Rhizobium esperanzae Cordeiro et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43929]	Gram stain	negative
[Ref.: #43929]	Cell shape	rod-shaped

[Ref.: #43929]	Colony size	1-2 mm
[Ref.: #43929]	Colony shape	circular
[Ref.: #43929]	Incubation period	2-3 days
[Ref.: #43929]	Cultivation medium used	modified-yeast extract-mannitol agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

modified-yeast extract-mannitol agar

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Culture medium growth

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Culture medium

Peptone yeast extract agar

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43929]		no	growth	37 °C
[Ref.: #43929]		no	growth	40 °C

[Ref.: #43929]	Temperature range	mesophilic
[Ref.: #43929]	Temperature range	thermophilic

	pH	Kind of pH		pH	pH range
[Ref.: #43929]		no	growth	4
[Ref.: #43929]			growth	8

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43929]		NaCl	no	growth	1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43929]	amygdalin ChEBI	-	carbon source
[Ref.: #43929]	arbutin ChEBI	-	carbon source
[Ref.: #43929]	cellobiose ChEBI	+/-	carbon source
[Ref.: #43929]	D-arabinose ChEBI	+	carbon source
[Ref.: #43929]	D-arabitol ChEBI	+	carbon source
[Ref.: #43929]	D-fructose ChEBI	+/-	carbon source
[Ref.: #43929]	D-fucose ChEBI	+	carbon source
[Ref.: #43929]	D-galactose ChEBI	+/-	carbon source
[Ref.: #43929]	D-glucose ChEBI	+/-	carbon source
[Ref.: #43929]	D-lyxose ChEBI	+/-	carbon source
[Ref.: #43929]	D-mannitol ChEBI	+/-	carbon source
[Ref.: #43929]	D-rhamnose ChEBI	+/-	carbon source
[Ref.: #43929]	D-ribose ChEBI	+/-	carbon source
[Ref.: #43929]	D-sorbitol ChEBI	+/-	carbon source
[Ref.: #43929]	D-tagatose ChEBI	-	carbon source
[Ref.: #43929]	D-xylose ChEBI	+/-	carbon source
[Ref.: #43929]	erythritol ChEBI	-	carbon source
[Ref.: #43929]	esculin ChEBI	+	carbon source
[Ref.: #43929]	galactitol ChEBI	-	carbon source
[Ref.: #43929]	gentiobiose ChEBI	+/-	carbon source
[Ref.: #43929]	glycerol 3-phosphate ChEBI	+	carbon source
[Ref.: #43929]	glycogen ChEBI	+	carbon source
[Ref.: #43929]	inulin ChEBI	-	carbon source
[Ref.: #43929]	L-arabinose ChEBI	+	carbon source
[Ref.: #43929]	L-arabitol ChEBI	-	carbon source
[Ref.: #43929]	L-fucose ChEBI	+	carbon source
[Ref.: #43929]	L-sorbose ChEBI	-	carbon source
[Ref.: #43929]	L-xylose ChEBI	+/-	carbon source
[Ref.: #43929]	lactose ChEBI	+/-	carbon source
[Ref.: #43929]	maltose ChEBI	+/-	carbon source
[Ref.: #43929]	melezitose ChEBI	-	carbon source
[Ref.: #43929]	melibiose ChEBI	+/-	carbon source
[Ref.: #43929]	methyl alpha-D-glucopyranoside ChEBI	+/-	carbon source
[Ref.: #43929]	methyl alpha-D-mannoside ChEBI	-	carbon source
[Ref.: #43929]	myo-inositol ChEBI	+/-	carbon source
[Ref.: #43929]	potassium 2-dehydro-D-gluconate	-	carbon source
[Ref.: #43929]	potassium 5-dehydro-D-gluconate	-	carbon source
[Ref.: #43929]	potassium gluconate ChEBI	-	carbon source
[Ref.: #43929]	raffinose ChEBI	+/-	carbon source
[Ref.: #43929]	ribitol ChEBI	+/-	carbon source
[Ref.: #43929]	salicin ChEBI	-	carbon source
[Ref.: #43929]	starch ChEBI	+	carbon source
[Ref.: #43929]	sucrose ChEBI	+/-	carbon source
[Ref.: #43929]	trehalose ChEBI	+/-	carbon source
[Ref.: #43929]	turanose ChEBI	+	carbon source
[Ref.: #43929]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43929]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43929]	bacitracin ChEBI				yes	0.04	Unit (disc)
[Ref.: #43929]	cefuroxime ChEBI	yes	30	µg (disc)
[Ref.: #43929]	chloramphenicol ChEBI				yes	30	µg (disc)
[Ref.: #43929]	erythromycin ChEBI				yes	15	µg (disc)
[Ref.: #43929]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #43929]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43929]	penicillin ChEBI				yes	10	Unit (disc)
[Ref.: #43929]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43929]	tetracycline ChEBI	yes	30	µg (disc)

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43929]		urease	+	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43929]

Fatty acid	Percentage
C18:1ω7c / C18:1ω6c	50.2
C19:0ω8c cyclo	28.2
C18:0	6.5
C12:0 aldehyde / unknown 10.928	6.2
C16:0	2.8
C18:0 3OH	2.2
C16:0 3OH	1.4
C17:0	1.1
11-methyl C18:1ω7c	0.5
C15:0 2OH	0.5
C20:2ω6c, ω9c	0.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43929]	Sample type/isolated from	Nitrogen-fixing effective root nodules of common bean (Phaseolus vulgaris) in Mexico
[Ref.: #43929]	Country	Mexico
[Ref.: #43929]	Country ISO 3 Code	MEX
[Ref.: #43929]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

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GC-content

59.8 mol%

genome sequence analysis

Availability in culture collections External links

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Culture collection no.

UMR 1320, LMG 30030, CNPSo 668

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequence of Rhizobium esperanzae Type Strain CNPSo 668, Isolated from Phaseolus vulgaris Nodules in Mexico.	Helene LCF, Ribeiro RA, Hungria M	Genome Announc	10.1128/genomeA.00935-17	2017	*
Phylogeny	Rhizobium esperanzae sp. nov., a N2-fixing root symbiont of Phaseolus vulgaris from Mexican soils.	Cordeiro AB, Ribeiro RA, Helene LCF, Hungria M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002225	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43929

Andrey Barbosa Cordeiro, Renan Augusto Ribeiro, Luisa Caroline Ferraz Helene, Mariangela Hungria: Rhizobium esperanzae sp. nov., a N 2 -fixing root symbiont of Phaseolus vulgaris from Mexican soils. IJSEM 67: 3937 - 3945 2017 ( DOI 10.1099/ijsem.0.002225 , PubMed 28895521 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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