Name: Pontibacterium granulatum A-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141044

Type strain:

Species: Pontibacterium granulatum

Strain Designation: A-1

Culture col. no.: KACC 18119, JCM 30136

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; A-1.

NCBI tax ID(s): 2036029 (species)

Section

Pontibacterium granulatum A-1 is an aerobe, Gram-negative, motile bacterium that forms irregular colonies and was isolated from tidal flat of the Taean coast, South Korea.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Pontibacterium*
	Species	**Pontibacterium granulatum**
	Full Scientific Name (LPSN)	Pontibacterium granulatum Hyeon et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43924]	Gram stain	negative

[Ref.: #43924]	Cell shape	rod-shaped

[Ref.: #43924]	Motility	yes

[Ref.: #43924]	Flagellum arrangement	polar

[Ref.: #43924]	Colony color	creamy white
[Ref.: #43924]	Colony shape	irregular
[Ref.: #43924]	Cultivation medium used	Marine agar 2216

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Tryptic soy agar

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Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #43924]	growth	20-40 °C
[Ref.: #43924]	optimum	30 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #43924]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43924]			optimum	7
[Ref.: #43924]			growth	6.0-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43924]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43924]		NaCl		growth	1-6	%(w/v)
[Ref.: #43924]		NaCl		optimum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43924]	adipate ChEBI	-	assimilation
[Ref.: #43924]	casein	-	hydrolysis
[Ref.: #43924]	D-glucose ChEBI	+	assimilation
[Ref.: #43924]	D-mannitol ChEBI	-	assimilation
[Ref.: #43924]	D-mannose ChEBI	-	assimilation
[Ref.: #43924]	decanoate ChEBI	-	assimilation
[Ref.: #43924]	esculin ChEBI	+	hydrolysis
[Ref.: #43924]	gelatin ChEBI	-	hydrolysis
[Ref.: #43924]	glucose ChEBI	-	fermentation
[Ref.: #43924]	L-arabinose ChEBI	-	assimilation
[Ref.: #43924]	malate ChEBI	-	assimilation
[Ref.: #43924]	maltose ChEBI	-	assimilation
[Ref.: #43924]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43924]	nitrate ChEBI	+	reduction
[Ref.: #43924]	phenylacetate ChEBI	-	assimilation
[Ref.: #43924]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43924]	sodium citrate ChEBI	-	assimilation
[Ref.: #43924]	starch ChEBI	-	hydrolysis
[Ref.: #43924]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43924]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43924]	tyrosine ChEBI	+	hydrolysis
[Ref.: #43924]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43924]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43924]	acid phosphatase	-	3.1.3.2
[Ref.: #43924]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43924]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43924]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43924]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43924]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43924]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43924]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43924]	beta-galactosidase	-	3.2.1.23
[Ref.: #43924]	beta-glucosidase	+	3.2.1.21
[Ref.: #43924]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43924]	catalase	+	1.11.1.6
[Ref.: #43924]	cystine arylamidase	-	3.4.11.3
[Ref.: #43924]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43924]	esterase (C 4)	+
[Ref.: #43924]	esterase Lipase (C 8)	-
[Ref.: #43924]	leucine arylamidase	+	3.4.11.1
[Ref.: #43924]	lipase (C 14)	-
[Ref.: #43924]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43924]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43924]	trypsin	-	3.4.21.4
[Ref.: #43924]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43924]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	35.3
C18:1ω7c / C18:1ω6c	32.9
C16:0	18.4
C10:0 3OH	9.1
C14:0	1.4
10-methyl C19:0	1.2
C18:0	0.4
C10:0	0.3
C12:0	0.3
C16:1ω5c	0.2
C16:0 3OH	0.2
C15:1ω8c	0.1
C12:1 3OH	0.1
C20:1ω7c	0.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43924]	Sample type/isolated from	tidal flat of the Taean coast, South Korea
[Ref.: #43924]	Geographic location (country and/or sea, region)	Taean coast
[Ref.: #43924]	Country	Republic of Korea
[Ref.: #43924]	Country ISO 3 Code	KOR
[Ref.: #43924]	Continent	Asia
[Ref.: #43924]	Geographic location	36.8143°/126.1860°
[Ref.: #43924]	Enrichment culture	Marine agar 2216
[Ref.: #43924]	Enrichment culture duration	3 days
[Ref.: #43924]	Enrichment culture temperature	25 ̊C

[Ref.: #67770]	Sample type/isolated from	Tidal flat of the Taean coast in South Korea
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY658457 (>99% sequence identity) for Oceanospirillaceae from Microbeatlas

Aquatic Samples	1073
Soil Samples	14
Animal Samples	21
Plant Samples	2
Total Samples	1110

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43924]	16S rRNA gene sequence	KY658457		GenBank

[Ref.: #43924]	GC-content	51.5 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	51.5 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43924]

Culture collection no.

KACC 18119, JCM 30136

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pontibacterium granulatum gen. nov., sp. nov., isolated from a tidal flat.	Hyeon JW, Kim KH, Chun BH, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002190	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43924

Jong Woo Hyeon, Kyung Hyun Kim, Byung Hee Chun, Che Ok Jeon: Pontibacterium granulatum gen. nov., sp. nov., isolated from a tidal flat. IJSEM 67: 3784 - 3790 2017 ( DOI 10.1099/ijsem.0.002190 , PubMed 28879841 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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