Pontibacterium granulatum (KACC 18119, JCM 30136, A-1)

Name: Pontibacterium granulatum (KACC 18119, JCM 30136, A-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141044

Type strain

Strain Designation A-1

Culture col. no. KACC 18119 JCM 30136 A-1

NCBI tax ID(s) 2036029

Special Collections JCM Literature strains

History C. O. Jeon; Chung-Ang Univ., South Korea; A-1.

Links

Pontibacterium granulatum A-1 is an aerobe, Gram-negative, motile bacterium that forms irregular colonies and was isolated from tidal flat of the Taean coast, South Korea.

Gram-negative motile rod-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132217

JCM 30136

@ref 20215

Last LPSN update 2026-02-09 11:33:48

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Oceanospirillaceae

Genus Pontibacterium

Species Pontibacterium granulatum

Full scientific name Pontibacterium granulatum Hyeon et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Flagellum arrangement
43924	negative	rod-shaped		polar

Colony morphology

@ref	Colony color	Colony shape	Medium used
43924	creamy white	irregular	Marine agar 2216

Culture and growth conditions

Culture medium

@ref	Name	Composition
43924	Marine agar (MA)
43924	LB (Luria-Bertani) MEDIUM	containing 2 % (w/v) NaCl
43924	Nutrient agar (NA)	containing 2 % (w/v) NaCl
43924	Reasoner's 2A agar (R2A)	containing 2 % (w/v) NaCl
43924	Tryptic soy agar	containing 2 % (w/v) NaCl

Culture temp

@ref	Growth	Type	Temperature (°C)
43924	positive	growth	20-40
43924	positive	optimum	30
67770	positive	growth	25

Culture pH

@ref	Ability	Type	PH	PH range
43924	positive	optimum	7
43924	positive	growth	6.0-10.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

43924

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43924	NaCl	positive	growth	1-6 %(w/v)
43924	NaCl	positive	optimum	2 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43924	17128 ChEBI	adipate	-	assimilation
43924		casein	-	hydrolysis
43924	17634 ChEBI	D-glucose	+	assimilation
43924	16899 ChEBI	D-mannitol	-	assimilation
43924	16024 ChEBI	D-mannose	-	assimilation
43924	27689 ChEBI	decanoate	-	assimilation
43924	4853 ChEBI	esculin	+	hydrolysis
43924	5291 ChEBI	gelatin	-	hydrolysis
43924	17234 ChEBI	glucose	-	fermentation
43924	30849 ChEBI	L-arabinose	-	assimilation
43924	25115 ChEBI	malate	-	assimilation
43924	17306 ChEBI	maltose	-	assimilation
43924	506227 ChEBI	N-acetylglucosamine	-	assimilation
43924	17632 ChEBI	nitrate	+	reduction
43924	18401 ChEBI	phenylacetate	-	assimilation
43924	32032 ChEBI	potassium gluconate	-	assimilation
43924	53258 ChEBI	sodium citrate	-	assimilation
43924	28017 ChEBI	starch	-	hydrolysis
43924	53424 ChEBI	tween 20	-	hydrolysis
43924	53426 ChEBI	tween 80	-	hydrolysis
43924	18186 ChEBI	tyrosine	+	hydrolysis
43924	16199 ChEBI	urea	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43924	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43924	acid phosphatase	-	3.1.3.2
43924	alkaline phosphatase	+	3.1.3.1
43924	alpha-chymotrypsin	-	3.4.21.1
43924	alpha-fucosidase	-	3.2.1.51
43924	alpha-galactosidase	-	3.2.1.22
43924	alpha-glucosidase	-	3.2.1.20
43924	alpha-mannosidase	-	3.2.1.24
43924	arginine dihydrolase	-	3.5.3.6
43924	beta-galactosidase	-	3.2.1.23
43924	beta-glucosidase	+	3.2.1.21
43924	beta-glucuronidase	-	3.2.1.31
43924	catalase	+	1.11.1.6
43924	cystine arylamidase	-	3.4.11.3
43924	cytochrome oxidase	-	1.9.3.1
43924	esterase (C 4)	+
43924	esterase Lipase (C 8)	-
43924	leucine arylamidase	+	3.4.11.1
43924	lipase (C 14)	-
43924	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43924	naphthol-AS-BI-phosphohydrolase	-
43924	trypsin	-	3.4.21.4
43924	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43924

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	35.3
C18:1ω7c / C18:1ω6c	32.9
C16:0	18.4
C10:0 3OH	9.1
C14:0	1.4
10-methyl C19:0	1.2
C18:0	0.4
C10:0	0.3
C12:0	0.3
C16:1ω5c	0.2
C16:0 3OH	0.2
C15:1ω8c	0.1
C12:1 3OH	0.1
C20:1ω7c	0.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
43924	tidal flat of the Taean coast, South Korea	Taean coast	Republic of Korea	KOR	Asia	36.8143	126.186 36.8143/126.186	Marine agar 2216	3 days	25
67770	Tidal flat of the Taean coast in South Korea

Taxonmaps

69479

Global distribution of 16S sequence KY658457 (>99% sequence identity) for Oceanospirillaceae from Microbeatlas

Aquatic Samples	1073
Soil Samples	14
Animal Samples	21
Plant Samples	2
Total Samples	1110

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
43924	Pontibacterium granulatum strain A-1 16S ribosomal RNA gene, partial sequence	KY658457

GC content

@ref	GC-content (mol%)	Method
43924	51.5	genome sequence analysis
67770	51.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pontibacterium granulatum gen. nov., sp. nov., isolated from a tidal flat.	Hyeon JW, Kim KH, Chun BH, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002190	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43924	Jong Woo Hyeon, Kyung Hyun Kim, Byung Hee Chun, Che Ok Jeon: Pontibacterium granulatum gen. nov., sp. nov., isolated from a tidal flat. IJSEM 67: 3784 - 3790 2017 ( DOI 10.1099/ijsem.0.002190 , PubMed 28879841 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pontibacterium granulatum (KACC 18119, JCM 30136, A-1)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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