Name: Parasphingopyxis algicola ATAX6-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141041

Type strain:

Species: Parasphingopyxis algicola

Strain Designation: ATAX6-5

Culture col. no.: KACC 18993, JCM 31719

Strain history: C. O. Jeon; Dept. of Life Sci., Chung-Ang Univ., South Korea; ATAX6-5.

NCBI tax ID(s): 2026624 (species)

Section

Parasphingopyxis algicola ATAX6-5 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from marine red alga, Asparagopsis taxiformis, Yellow Sea, South Korea.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Parasphingopyxis*
	Species	**Parasphingopyxis algicola**
	Full Scientific Name (LPSN)	Parasphingopyxis algicola Jeong et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43921]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #43921]	Cell length	1.0-2.2 µm

[Ref.: #43921]	Cell width	0.4-0.5 µm

[Ref.: #43921]	Cell shape	rod-shaped

[Ref.: #43921]	Motility	no

[Ref.: #43921]	Colony color	yellow
[Ref.: #43921]	Colony shape	circular
[Ref.: #43921]	Cultivation medium used	Marine agar 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43921]

Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #43921]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43921]

Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #43921]	growth	5-35 °C
[Ref.: #43921]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #43921]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43921]			optimum	7
[Ref.: #43921]			growth	6.0-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43921]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43921]		NaCl		growth	0-6	%(w/v)
[Ref.: #43921]		NaCl		optimum	2	%(w/v)

[Ref.: #43921]	Observation	quinone Q-10
[Ref.: #67770]	Observation	quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43921]	adipate ChEBI	-	assimilation
[Ref.: #43921]	casein	-	hydrolysis
[Ref.: #43921]	citrate ChEBI	+	assimilation
[Ref.: #43921]	D-glucose ChEBI	+	assimilation
[Ref.: #43921]	D-mannitol ChEBI	+	assimilation
[Ref.: #43921]	D-mannose ChEBI	+	assimilation
[Ref.: #43921]	decanoate ChEBI	+	assimilation
[Ref.: #43921]	esculin ChEBI	-	hydrolysis
[Ref.: #43921]	gelatin ChEBI	-	hydrolysis
[Ref.: #43921]	glucose ChEBI	-	fermentation
[Ref.: #43921]	L-arabinose ChEBI	+	assimilation
[Ref.: #43921]	malate ChEBI	+	assimilation
[Ref.: #43921]	maltose hydrate	+	assimilation
[Ref.: #43921]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43921]	nitrate ChEBI	+	reduction
[Ref.: #43921]	phenylacetate ChEBI	-	assimilation
[Ref.: #43921]	potassium gluconate ChEBI	+	assimilation
[Ref.: #43921]	starch ChEBI	-	hydrolysis
[Ref.: #43921]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43921]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43921]	tyrosine ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43921]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43921]	acid phosphatase	+	3.1.3.2
[Ref.: #43921]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43921]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43921]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43921]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43921]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43921]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43921]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43921]	beta-galactosidase	-	3.2.1.23
[Ref.: #43921]	beta-glucosidase	-	3.2.1.21
[Ref.: #43921]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43921]	catalase	+	1.11.1.6
[Ref.: #43921]	cystine arylamidase	-	3.4.11.3
[Ref.: #43921]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43921]	esterase (C 4)	+
[Ref.: #43921]	esterase Lipase (C 8)	+
[Ref.: #43921]	leucine arylamidase	+	3.4.11.1
[Ref.: #43921]	lipase (C 14)	+
[Ref.: #43921]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43921]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43921]	protease	-
[Ref.: #43921]	trypsin	-	3.4.21.4
[Ref.: #43921]	urease	-	3.5.1.5
[Ref.: #43921]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43921]

Fatty acid	Percentage	ECL
C18:1ω7c	54.7
C16:0	17.5
C17:1ω6c	10
C16:0 2OH	3.1
C17:1 iso I /C17:1 anteiso B	2
11-methyl C18:1ω7c	2
unknown ECL 18.846 / C19:1ω6c / C19:1&	1.8	18846
C17:0	1.7
C17:1ω8c	1.5
C16:1ω6c / C16:1ω7c	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43921]	Sample type/isolated from	marine red alga, Asparagopsis taxiformis, Yellow (West) Sea, South Korea
[Ref.: #43921]	Geographic location (country and/or sea, region)	Yellow (West) Sea
[Ref.: #43921]	Country	Republic of Korea
[Ref.: #43921]	Country ISO 3 Code	KOR
[Ref.: #43921]	Continent	Asia
[Ref.: #43921]	Geographic location	36.9044°/126.1980°
[Ref.: #43921]	Enrichment culture	Marine agar 2216
[Ref.: #43921]	Enrichment culture composition	1/5 strength, 2% (w/v) NaCl
[Ref.: #43921]	Enrichment culture duration	3 days
[Ref.: #43921]	Enrichment culture temperature	25 ̊C

[Ref.: #67770]	Sample type/isolated from	Marine red alga, Asparagopsis taxiformis
[Ref.: #67770]	Host species	Asparagopsis taxiformis
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Algae	#Red algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY200670 (>99% sequence identity) for Parasphingopyxis algicola subclade from Microbeatlas

Aquatic Samples	1495
Soil Samples	57
Animal Samples	58
Plant Samples	3
Total Samples	1613

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43921]	16s rRNA gene sequence	KY200670		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Parasphingopyxis algicola JCM 31719	GCA_013378075	complete	GenBank	2026624 tax ID	*
[Ref.: #66792]	Parasphingopyxis algicola strain JCM 31719	2026624.3	complete	PATRIC	2026624 tax ID	*

[Ref.: #43921]	GC-content	60.4 mol%	real time PCR (RTD-PCR)
[Ref.: #67770]	GC-content	60.4 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Parasphingopyxis algicola JCM 31719 NCBI: GCA_013378075.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Parasphingopyxis algicola JCM 31719 NCBI: GCA_013378075.1
[Ref.: #69480]	motile	no	84.748	yes
[Ref.: #69480]	flagellated	no	96.391	no
[Ref.: #69480]	gram-positive	no	97.202	yes
[Ref.: #69480]	anaerobic	no	99.273	no
[Ref.: #69480]	aerobic	yes	92.256	yes
[Ref.: #69480]	halophile	no	69.385	no
[Ref.: #69480]	spore-forming	no	96.771	no
[Ref.: #69480]	glucose-util	yes	74.74	no
[Ref.: #69480]	thermophile	no	94.68	yes
[Ref.: #69480]	glucose-ferment	no	92.943	yes

Availability in culture collections External links

[Ref.: #43921]

Culture collection no.

KACC 18993, JCM 31719

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Parasphingopyxis marina sp. nov. isolated from coastal seawater.	Choi SY, Oh JS, Roh DH	Int J Syst Evol Microbiol	10.1099/ijsem.0.005049	2021	*
Phylogeny	Parasphingopyxis algicola sp. nov., isolated from a marine red alga Asparagopsis taxiformis and emended description of the genus Parasphingopyxis Uchida et al. 2012.	Jeong SE, Kim KH, Baek K, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002215	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43921

Sang Eun Jeong, Kyung Hyun Kim Kyunghwa Baek, Che Ok Jeon: Parasphingopyxis algicola sp. nov., isolated from a marine red alga Asparagopsis taxiformis and emended description of the genus Parasphingopyxis Uchida et al. 2012. IJSEM 67: 3877 - 3881 2017 ( DOI 10.1099/ijsem.0.002215 , PubMed 28884660 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Parasphingopyxis algicola JCM 31719

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