Psychrobacter piechaudii (CIP 110854, CECT 9185, 1232)

Name: Psychrobacter piechaudii (CIP 110854, CECT 9185, 1232)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141031

Type strain

Strain Designation 1232, 1232SS

Culture col. no. CIP 110854 CECT 9185 1232 1232SS

NCBI tax ID(s) 1945521

Special Collections CIP Literature strains

History CIP <- 2002, Inst. Pasteur, Paris, France: strain R715, Moraxella phenylpyronica <- M. Piéchaud, Inst. Pasteur, Paris, France : strain 1232SS

Links

Psychrobacter piechaudii 1232 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from human origin.

Gram-negative coccus-shaped colony-forming aerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 413276

CECT 9185,CIP 110854

@ref 20215

Last LPSN update 2026-02-09 11:33:47

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Psychrobacter

Species Psychrobacter piechaudii

Full scientific name Psychrobacter piechaudii Hurtado-Ortiz et al. 2017

BacDive ID	Other strains from **Psychrobacter piechaudii** (3)	Type strain
173481	P. piechaudii 5542SS, CIP 110860, CIP 200661
173482	P. piechaudii Grosjean, CIP 110861, CIP 200662
173483	P. piechaudii 9413, CIP 110867, CIP 200659

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
43912	negative	coccus-shaped
125438	negative		99
121825	negative	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43912	1-2 mm	colourless	circular	2 days	Blood agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
43912	Blood agar
121825	CIP Medium 6		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
43912	positive	growth	0-37
43912	positive	optimum	30

Physiology and metabolism

Oxygen tolerance

43912

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
43912
125438		92.646

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43912	NaCl	positive	growth	0-15 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43912	28816 ChEBI	2-deoxy-d-ribose	+	carbon source
43912	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
43912	22599 ChEBI	arabinose	-	builds acid from
43912	16947 ChEBI	citrate	-	builds acid from
43912	17315 ChEBI	D-glucosamine	+	carbon source
43912	17634 ChEBI	D-glucose	-	builds acid from
43912	16988 ChEBI	D-ribose	+	carbon source
43912	65327 ChEBI	D-xylose	+	carbon source
43912	30849 ChEBI	L-arabinose	+	carbon source
43912	62320 ChEBI	L-lyxose	+	carbon source
43912	25115 ChEBI	malate	-	builds acid from
43912	37684 ChEBI	mannose	-	builds acid from
43912	17632 ChEBI	nitrate	-	reduction
43912	53424 ChEBI	tween 20	+	carbon source
43912	53423 ChEBI	tween 40	+	carbon source
43912	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
43912	alkaline phosphatase	-	3.1.3.1
43912	catalase	+	1.11.1.6
43912	cystine arylamidase		3.4.11.3
43912	cytochrome oxidase	+	1.9.3.1
43912	esterase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	octane oxidation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	butanoate fermentation	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	glutamate and glutamine metabolism	92.86	26 of 28
66794	vitamin B1 metabolism	92.31	12 of 13
66794	vitamin B6 metabolism	90.91	10 of 11
66794	NAD metabolism	88.89	16 of 18
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	leucine metabolism	84.62	11 of 13
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	3-chlorocatechol degradation	80	4 of 5
66794	lipoate biosynthesis	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	lactate fermentation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	purine metabolism	70.21	66 of 94
66794	alanine metabolism	68.97	20 of 29
66794	acetoin degradation	66.67	2 of 3
66794	lysine metabolism	66.67	28 of 42
66794	tryptophan metabolism	63.16	24 of 38
66794	gluconeogenesis	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	pyrimidine metabolism	62.22	28 of 45
66794	lipid metabolism	61.29	19 of 31
66794	non-pathway related	60.53	23 of 38
66794	propionate fermentation	60	6 of 10
66794	arginine metabolism	58.33	14 of 24
66794	tyrosine metabolism	57.14	8 of 14
66794	cysteine metabolism	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	phenol degradation	55	11 of 20
66794	pentose phosphate pathway	54.55	6 of 11
66794	methionine metabolism	53.85	14 of 26
66794	cyclohexanol degradation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	Entner Doudoroff pathway	50	5 of 10
66794	isoprenoid biosynthesis	50	13 of 26
66794	glycogen biosynthesis	50	2 of 4
66794	catecholamine biosynthesis	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	glycolysis	47.06	8 of 17
66794	urea cycle	46.15	6 of 13
66794	nitrate assimilation	44.44	4 of 9
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	oxidative phosphorylation	43.96	40 of 91
66794	degradation of sugar alcohols	43.75	7 of 16
66794	polyamine pathway	43.48	10 of 23
66794	glutathione metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	3-phenylpropionate degradation	40	6 of 15
66794	arachidonate biosynthesis	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	metabolism of disaccharids	36.36	4 of 11
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	cyanate degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	sulfoquinovose degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	degradation of pentoses	32.14	9 of 28
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	vitamin B12 metabolism	29.41	10 of 34
66794	ascorbate metabolism	27.27	6 of 22
66794	methanogenesis from CO2	25	3 of 12
66794	toluene degradation	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	alginate biosynthesis	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	arachidonic acid metabolism	22.22	4 of 18
66794	degradation of hexoses	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human

Isolation

43912

Sample typehuman origin

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
121825	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Psychrobacter piechaudii CIP110854 assembly for Psychrobacter piechaudii	scaffold	GCA_900162825	1945521.3	2850065688	1945521	18.08

GC content

@ref	GC-content (mol%)	Method
43912	42.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Psychrobacter sp. CIP 110854 strain Psychrobacter_piechaudii
PATRIC: 1945521.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	yes
125438	anaerobic	anaerobicⓘ	no	97.00	yes
125438	spore-forming	spore-formingⓘ	no	92.65	yes
125438	aerobic	aerobicⓘ	yes	86.49	yes
125438	thermophilic	thermophileⓘ	no	95.95	yes
125438	flagellated	motile2+ⓘ	no	85.04	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.	Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D	Int J Syst Evol Microbiol	10.1099/ijsem.0.002065	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43912	Raquel Hurtado-Ortiz, Anissa Nazimoudine, Alexis Criscuolo, Perrine Hugon, Damien Mornico, Sylvain Brisse, Chantal Bizet, Dominique Clermont: Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter. IJSEM 67: 3192 - 3197 2017 ( DOI 10.1099/ijsem.0.002065 , PubMed 28840795 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#121825	Collection of Institut Pasteur ; Curators of the CIP; CIP 110854
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Psychrobacter piechaudii (CIP 110854, CECT 9185, 1232)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900162825

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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