Psychrobacter pasteurii (CIP 110853, CECT 9184, A1019)

Name: Psychrobacter pasteurii (CIP 110853, CECT 9184, A1019)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141029

Type strain

Strain Designation A1019, A1019SS

Culture col. no. CIP 110853 CECT 9184 A1019 A1019SS

NCBI tax ID(s) 1945520

Special Collections CIP Literature strains

History CIP <- 2002, Inst. Pasteur, Paris, France: strain R714, Moraxella phenylpyronica <- M. Piéchaud, Inst. Pasteur, Paris, France: strain A1019SS

Links

Psychrobacter pasteurii A1019 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from human origin.

Gram-negative coccus-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 413593

CECT 9184,CIP 110853

@ref 20215

Last LPSN update 2026-05-29 08:39:51

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Psychrobacter

Species Psychrobacter pasteurii

Full scientific name Psychrobacter pasteurii Hurtado-Ortiz et al. 2017

BacDive ID	Other strains from **Psychrobacter pasteurii** (1)	Type strain
173382	P. pasteurii A390SS, CIP 110859, CIP 200660

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
43912	negative	coccus-shaped
121625	negative	rod-shaped
125438	negative		98

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43912	1-2 mm	colourless	circular	2 days	Blood agar

Culture and growth conditions

Culture medium

@ref	Name	Medium link
43912	Blood agar
43912	Brain Heart Infusion
121625	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
43912	positive	growth	0-37
43912	positive	optimum	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43912	aerobe
125439	obligate aerobe	98.296

Spore formation

@ref	Spore formation	Confidence
125438		93.59
125439		99.753

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43912	NaCl	positive	growth	0-15 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43912	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
43912	22599 ChEBI	arabinose	-	builds acid from
43912	16947 ChEBI	citrate	-	builds acid from
43912	17108 ChEBI	D-arabinose	+	carbon source
43912	17315 ChEBI	D-glucosamine	+	carbon source
43912	17634 ChEBI	D-glucose	-	builds acid from
43912	16988 ChEBI	D-ribose	+	carbon source
43912	65327 ChEBI	D-xylose	+	carbon source
43912	23652 ChEBI	dextrin	+	carbon source
43912	30849 ChEBI	L-arabinose	+	carbon source
43912	62320 ChEBI	L-lyxose	+	carbon source
43912	25115 ChEBI	malate	-	builds acid from
43912	37684 ChEBI	mannose	-	builds acid from
43912	17632 ChEBI	nitrate	+	reduction
43912	53424 ChEBI	tween 20	+	carbon source
43912	53423 ChEBI	tween 40	+	carbon source
43912	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
43912	catalase	+	1.11.1.6
43912	cystine arylamidase	-	3.4.11.3
43912	cytochrome oxidase	+	1.9.3.1
43912	esterase	+
43912	lipase (C 14)	+
43912	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human

Isolation

43912

Sample typehuman origin

Taxonmaps

69479

Global distribution of 16S sequence KY292375 (>99% sequence identity) for Psychrobacter from Microbeatlas

Aquatic Samples	5137
Soil Samples	2596
Animal Samples	17078
Plant Samples	598
Total Samples	25409

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
121625	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Psychrobacter pasteurii CIP110853 assembly for Psychrobacter pasteurii	contig	GCA_900162815	1945520.4	2850029222	1945520	32.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43912	Psychrobacter piechaudii 16S ribosomal RNA gene, partial sequence	KY292375
124043	Psychrobacter pasteurii 16S ribosomal RNA gene, partial sequence.	KY292376	1460		1945520

GC content

@ref	GC-content (mol%)	Method
43912	42.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Psychrobacter pasteurii CIP110853 assembly for Psychrobacter pasteurii
NCBI: GCA_900162815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.30	no
125439	gram_stain	BacteriaNetⓘ	negative	85.52	no
125439	motility	BacteriaNetⓘ	yes	58.87	no
125439	spore_formation	BacteriaNetⓘ	no	99.75	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Psychrobacter sp. CIP 110853 strain Psychrobacter_pasteurii
PATRIC: 1945520.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	yes
125438	anaerobic	anaerobicⓘ	no	97.59	yes
125438	spore-forming	spore-formingⓘ	no	93.59	no
125438	aerobic	aerobicⓘ	yes	87.60	yes
125438	thermophilic	thermophileⓘ	no	94.94	yes
125438	flagellated	motile2+ⓘ	no	78.12	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.	Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D	Int J Syst Evol Microbiol	10.1099/ijsem.0.002065	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43912	Raquel Hurtado-Ortiz, Anissa Nazimoudine, Alexis Criscuolo, Perrine Hugon, Damien Mornico, Sylvain Brisse, Chantal Bizet, Dominique Clermont: Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter. IJSEM 67: 3192 - 3197 2017 ( DOI 10.1099/ijsem.0.002065 , PubMed 28840795 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121625	Collection of Institut Pasteur ; Curators of the CIP; CIP 110853
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Psychrobacter pasteurii (CIP 110853, CECT 9184, A1019)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900162815

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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