Name: Psychrobacter pasteurii A1019
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141029

Type strain:

Species: Psychrobacter pasteurii

Strain Designation: A1019, A1019SS

Culture col. no.: CIP 110853, CECT 9184

Strain history: CIP <- 2002, Inst. Pasteur, Paris, France: strain R714, Moraxella phenylpyronica <- M. Piéchaud, Inst. Pasteur, Paris, France: strain A1019SS

NCBI tax ID(s): 1945520 (species)

SI-ID 413593

CIP 110853

Other strains from Psychrobacter pasteurii

P. pasteurii A390SS, CIP 110859, CIP 200660

Section

Psychrobacter pasteurii A1019 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from human origin.

coccus-shaped
colony-forming
Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Species	**Psychrobacter pasteurii**
	Full Scientific Name (LPSN)	Psychrobacter pasteurii Hurtado-Ortiz et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43912]	Gram stain	negative
[Ref.: #121625]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #43912]	Cell shape	coccus-shaped
[Ref.: #121625]	Cell shape	rod-shaped

[Ref.: #43912]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %96.614

[Ref.: #43912]	Colony size	1-2 mm
[Ref.: #43912]	Colony color	colourless
[Ref.: #43912]	Colony shape	circular
[Ref.: #43912]	Incubation period	2 days
[Ref.: #43912]	Cultivation medium used	Blood agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43912]

Culture medium

Blood agar

[Ref.: #43912]

Culture medium growth

[Ref.: #43912]

Culture medium

Brain Heart Infusion

[Ref.: #43912]

Culture medium growth

[Ref.: #121625]

Culture medium

CIP Medium 6

[Ref.: #121625]

Culture medium growth

[Ref.: #121625]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #43912]			growth	0-37 °C
[Ref.: #43912]			optimum	30 °C

[Ref.: #43912]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43912]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43912]		NaCl		growth	0-15	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43912]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #43912]	arabinose ChEBI	-	builds acid from
[Ref.: #43912]	citrate ChEBI	-	builds acid from
[Ref.: #43912]	D-arabinose ChEBI	+	carbon source
[Ref.: #43912]	D-glucosamine ChEBI	+	carbon source
[Ref.: #43912]	D-glucose ChEBI	-	builds acid from
[Ref.: #43912]	D-ribose ChEBI	+	carbon source
[Ref.: #43912]	D-xylose ChEBI	+	carbon source
[Ref.: #43912]	dextrin ChEBI	+	carbon source
[Ref.: #43912]	L-arabinose ChEBI	+	carbon source
[Ref.: #43912]	L-lyxose ChEBI	+	carbon source
[Ref.: #43912]	malate ChEBI	-	builds acid from
[Ref.: #43912]	mannose ChEBI	-	builds acid from
[Ref.: #43912]	nitrate ChEBI	+	reduction
[Ref.: #43912]	tween 20 ChEBI	+	carbon source
[Ref.: #43912]	tween 40 ChEBI	+	carbon source
[Ref.: #43912]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43912]	catalase	+	1.11.1.6
[Ref.: #43912]	cystine arylamidase	-	3.4.11.3
[Ref.: #43912]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43912]	esterase	+
[Ref.: #43912]	lipase (C 14)	+
[Ref.: #43912]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43912]	Sample type/isolated from	human origin
* marker position based on {}

Isolation sources categories

#Host

#Human

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY292375 (>99% sequence identity) for Psychrobacter from Microbeatlas

Aquatic Samples	5137
Soil Samples	2596
Animal Samples	17078
Plant Samples	598
Total Samples	25409

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #121625]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43912]	16S rRNA gene sequence	KY292375		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Psychrobacter sp. CIP 110853 strain Psychrobacter_pasteurii	1945520.4	wgs	PATRIC	1945520 tax ID	*

[Ref.: #43912]

GC-content

42.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Psychrobacter sp. CIP 110853 strain Psychrobacter_pasteurii PATRIC: 1945520.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Psychrobacter sp. CIP 110853 strain Psychrobacter_pasteurii PATRIC: 1945520.4
[Ref.: #69480]	motile	no	89.981	no
[Ref.: #69480]	gram-positive	no	97.594	no
[Ref.: #69480]	anaerobic	no	98.104	yes
[Ref.: #69480]	aerobic	yes	83.635	yes
[Ref.: #69480]	halophile	yes	74.233	no
[Ref.: #69480]	spore-forming	no	96.562	no
[Ref.: #69480]	glucose-util	no	64.804	no
[Ref.: #69480]	flagellated	no	92.204	yes
[Ref.: #69480]	thermophile	no	97.386	yes
[Ref.: #69480]	glucose-ferment	no	91.571	no

Availability in culture collections External links

[Ref.: #43912]

Culture collection no.

CIP 110853, CECT 9184

[Ref.: #96842]

SI-ID 413593

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.	Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D	Int J Syst Evol Microbiol	10.1099/ijsem.0.002065	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43912

Raquel Hurtado-Ortiz, Anissa Nazimoudine, Alexis Criscuolo, Perrine Hugon, Damien Mornico, Sylvain Brisse, Chantal Bizet, Dominique Clermont: Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter. IJSEM 67: 3192 - 3197 2017 ( DOI 10.1099/ijsem.0.002065 , PubMed 28840795 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96842

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID413593.1 )

#121625 Collection of Institut Pasteur ; Curators of the CIP; CIP 110853
* These data were automatically processed and therefore are not curated

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Psychrobacter sp. CIP 110853 strain Psychrobacter_pasteurii

Psychrobacter sp. CIP 110853 strain Psychrobacter_pasteurii

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