Name: Caballeronia pedi R-52612
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141023

Type strain:

Species: Caballeronia pedi

Strain Designation: R-52612

Culture col. no.: LMG 29323, CCUG 68406, CIP 110996

Strain history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-52612

NCBI tax ID(s): 1777141 (species)

SI-ID 410326

CCUG 68406

Section

Caballeronia pedi R-52612 is an aerobe, mesophilic, motile bacterium that was isolated from Soil.

motile
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Caballeronia*
	Species	**Caballeronia pedi**
	Full Scientific Name (LPSN)	Caballeronia pedi (Peeters et al. 2016) Dobritsa et al. 2017

Synonym

Burkholderia pedi

Information on morphological and physiological properties Morphology

[Ref.: #121647]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.986

[Ref.: #121647]	Cell shape	rod-shaped

[Ref.: #121647]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %90.174

Information on culture and growth conditions Culture and growth conditions

[Ref.: #121647]

Culture medium

CIP Medium 72

[Ref.: #121647]

Culture medium growth

[Ref.: #121647]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #63475]			growth	30 °C

[Ref.: #63475]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63475]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.977

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #63475]	Sample type/isolated from	Soil
[Ref.: #63475]	Sampling date	2014
[Ref.: #63475]	Country	Belgium
[Ref.: #63475]	Country ISO 3 Code	BEL
[Ref.: #63475]	Continent	Europe

[Ref.: #121647]	Sample type/isolated from	Environment, Soil
[Ref.: #121647]	Country	Belgium
[Ref.: #121647]	Country ISO 3 Code	BEL
[Ref.: #121647]	Continent	Europe
[Ref.: #121647]	Isolation date	2014-01-02
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #121647]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caballeronia pedi LMG 29323	GCA_001544915	contig	GenBank	1777141 tax ID	*
[Ref.: #66792]	Burkholderia sp. strain LMG 29323	36773.29	wgs	PATRIC	36773 tax ID	*
[Ref.: #66792]	Caballeronia pedi LMG 29323	2724679460	draft	JGI IMG/M	1777141 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Burkholderia sp. strain LMG 29323 PATRIC: 36773.29
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Burkholderia sp. strain LMG 29323 PATRIC: 36773.29
[Ref.: #69480]	gram-positive	no	97.851	no
[Ref.: #69480]	anaerobic	no	98.301	yes
[Ref.: #69480]	halophile	no	94.158	no
[Ref.: #69480]	spore-forming	no	92.538	no
[Ref.: #69480]	glucose-util	yes	87.567	no
[Ref.: #69480]	aerobic	yes	87.259	no
[Ref.: #69480]	motile	yes	87.357	no
[Ref.: #69480]	flagellated	no	80.517	no
[Ref.: #69480]	thermophile	no	99.414	no
[Ref.: #69480]	glucose-ferment	no	89.459	no

Availability in culture collections External links

[Ref.: #43568]

Culture collection no.

LMG 29323, CCUG 68406, CIP 110996

[Ref.: #96838]

SI-ID 410326

Literature:

	Title	Authors	Journal	DOI	Year
	Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.	Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P	Front Microbiol	10.3389/fmicb.2016.00877	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43568

Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour: Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.. IJSEM 67: 3846 - 3853 2017 ( DOI 10.1099/ijsem.0.002202 , PubMed 28879843 )

#63475 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 68406

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96838

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID410326.1 )

#121647 Collection of Institut Pasteur ; Curators of the CIP; CIP 110996
* These data were automatically processed and therefore are not curated

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Burkholderia sp. strain LMG 29323

Burkholderia sp. strain LMG 29323

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