Name: Caballeronia hypogeia R-52609
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141022

Type strain:

Species: Caballeronia hypogeia

Strain Designation: R-52609

Culture col. no.: LMG 29322, CCUG 68407, CIP 111006

Strain history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-52609

NCBI tax ID(s): 1777140 (species)

SI-ID 410656

CCUG 68407

Section

Caballeronia hypogeia R-52609 is an aerobe, mesophilic, motile bacterium that was isolated from Soil.

motile
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Caballeronia*
	Species	**Caballeronia hypogeia**
	Full Scientific Name (LPSN)	Caballeronia hypogeia (Peeters et al. 2016) Dobritsa et al. 2017

Synonym

Burkholderia hypogeia

Information on morphological and physiological properties Morphology

[Ref.: #120034]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.977

[Ref.: #120034]	Cell shape	rod-shaped

[Ref.: #120034]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %90.629

Information on culture and growth conditions Culture and growth conditions

[Ref.: #120034]

Culture medium

CIP Medium 72

[Ref.: #120034]

Culture medium growth

[Ref.: #120034]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #63476]			growth	30 °C

[Ref.: #63476]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63476]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #63476]	Sample type/isolated from	Soil
[Ref.: #63476]	Sampling date	2014
[Ref.: #63476]	Country	Belgium
[Ref.: #63476]	Country ISO 3 Code	BEL
[Ref.: #63476]	Continent	Europe

[Ref.: #120034]	Sample type/isolated from	Environment, Soil
[Ref.: #120034]	Country	Belgium
[Ref.: #120034]	Country ISO 3 Code	BEL
[Ref.: #120034]	Continent	Europe
[Ref.: #120034]	Isolation date	2014-01-02
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #120034]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caballeronia hypogeia LMG 29322	GCA_001544875	contig	GenBank	1777140 tax ID	*
[Ref.: #66792]	Burkholderia sp. strain LMG 29322	36773.28	wgs	PATRIC	36773 tax ID	*
[Ref.: #66792]	Caballeronia hypogeia LMG 29322	2713896993	draft	JGI IMG/M	1777140 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Burkholderia sp. strain LMG 29322 PATRIC: 36773.28
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Burkholderia sp. strain LMG 29322 PATRIC: 36773.28
[Ref.: #69480]	gram-positive	no	98.496	no
[Ref.: #69480]	anaerobic	no	98.569	yes
[Ref.: #69480]	halophile	no	93.391	no
[Ref.: #69480]	spore-forming	no	93.934	no
[Ref.: #69480]	glucose-util	yes	88.71	no
[Ref.: #69480]	aerobic	yes	91.574	yes
[Ref.: #69480]	motile	yes	87.112	no
[Ref.: #69480]	flagellated	no	85.487	no
[Ref.: #69480]	thermophile	no	99.381	no
[Ref.: #69480]	glucose-ferment	no	89.082	no

Availability in culture collections External links

[Ref.: #43568]

Culture collection no.

LMG 29322, CCUG 68407, CIP 111006

[Ref.: #96837]

SI-ID 410656

Literature:

	Title	Authors	Journal	DOI	Year
	Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.	Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P	Front Microbiol	10.3389/fmicb.2016.00877	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43568

Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour: Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.. IJSEM 67: 3846 - 3853 2017 ( DOI 10.1099/ijsem.0.002202 , PubMed 28879843 )

#63476 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 68407

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96837

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID410656.1 )

#120034 Collection of Institut Pasteur ; Curators of the CIP; CIP 111006
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Caballeronia hypogeia in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Burkholderia sp. strain LMG 29322

Burkholderia sp. strain LMG 29322

Change proposal

Change proposal