Caballeronia arvi (LMG 29317, CCUG 68412, CIP 111001)

Name: Caballeronia arvi (LMG 29317, CCUG 68412, CIP 111001)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141016

Type strain

Strain Designation R-50208, MAN34

Culture col. no. LMG 29317 CCUG 68412 CIP 111001 R-50208 MAN34

NCBI tax ID(s) 1777135

Special Collections CCUG Literature strains CIP

History CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-50208 <- W. Draghi, Argentina: strain MAN34

Links

Caballeronia arvi R-50208 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from Soil.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 410593

LMG 29317,CCUG 68412

@ref 20215

Last LPSN update 2026-02-09 11:33:47

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Caballeronia

Species Caballeronia arvi

Full scientific name Caballeronia arvi (Peeters et al. 2016) Dobritsa et al. 2017

Synonyms (1)

Burkholderia arvi

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		91.4
125438	negative		98
116515	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
116515	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
63481	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
63481	aerobe
125438	aerobe	93.552
125439	obligate aerobe	99.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent	Isolation date
63481	Soil	2010	Argentina	ARG	Middle and South America
116515	Environment, Soil		Argentina	ARG	Middle and South America	2010-01-04

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
116515	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM154469v2 assembly for Caballeronia arvi	contig	GCA_001544695	1777135.4	2724679466	1777135	7.62
66792	Burkholderia sp. strain LMG 29317	contig		36773.24		36773	4.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Burkholderia arvi partial 16S rRNA gene, type strain LMG 29317T	LT158615	1484		1777135

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Caballeronia arvi LMG 29317
NCBI: GCA_001544695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.70	no
125439	motility	BacteriaNetⓘ	yes	58.00	no
125439	gram_stain	BacteriaNetⓘ	negative	91.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Burkholderia sp. strain LMG 29317
PATRIC: 36773.24

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	97.50	yes
125438	spore-forming	spore-formingⓘ	no	83.42	no
125438	aerobic	aerobicⓘ	yes	93.55	no
125438	thermophilic	thermophileⓘ	no	97.50	no
125438	flagellated	motile2+ⓘ	yes	84.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Identification and Characterization of a Novel pic Gene Cluster Responsible for Picolinic Acid Degradation in Alcaligenes faecalis JQ135.	Qiu J, Zhao L, Xu S, Chen Q, Chen L, Liu B, Hong Q, Lu Z, He J.	J Bacteriol	10.1128/jb.00077-19	2019
Genetics	Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato.	Beukes CW, Palmer M, Manyaka P, Chan WY, Avontuur JR, van Zyl E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Blom J, Whitman WB, Venter SN, Steenkamp ET.	Front Microbiol	10.3389/fmicb.2017.01154	2017
	Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.	Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P	Front Microbiol	10.3389/fmicb.2016.00877	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43568	Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour: Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.. IJSEM 67: 3846 - 3853 2017 ( DOI 10.1099/ijsem.0.002202 , PubMed 28879843 )
#63481	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 68412
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#116515	Collection of Institut Pasteur ; Curators of the CIP; CIP 111001
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Caballeronia arvi (LMG 29317, CCUG 68412, CIP 111001)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001544695

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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