Name: Caballeronia arvi R-50208
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141016

Type strain:

Species: Caballeronia arvi

Strain Designation: R-50208, MAN34

Culture col. no.: LMG 29317, CCUG 68412, CIP 111001

Strain history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-50208 <- W. Draghi, Argentina: strain MAN34

NCBI tax ID(s): 1777135 (species)

SI-ID 410593

CCUG 68412

Section

Caballeronia arvi R-50208 is an aerobe, mesophilic, motile bacterium that was isolated from Soil.

motile
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Caballeronia*
	Species	**Caballeronia arvi**
	Full Scientific Name (LPSN)	Caballeronia arvi (Peeters et al. 2016) Dobritsa et al. 2017

Synonym

Burkholderia arvi

Information on morphological and physiological properties Morphology

[Ref.: #116515]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #116515]	Cell shape	rod-shaped

[Ref.: #116515]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %93.148

Information on culture and growth conditions Culture and growth conditions

[Ref.: #116515]

Culture medium

CIP Medium 72

[Ref.: #116515]

Culture medium growth

[Ref.: #116515]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #63481]			growth	30 °C

[Ref.: #63481]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63481]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.972

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #63481]	Sample type/isolated from	Soil
[Ref.: #63481]	Sampling date	2010
[Ref.: #63481]	Country	Argentina
[Ref.: #63481]	Country ISO 3 Code	ARG
[Ref.: #63481]	Continent	Middle and South America

[Ref.: #116515]	Sample type/isolated from	Environment, Soil
[Ref.: #116515]	Country	Argentina
[Ref.: #116515]	Country ISO 3 Code	ARG
[Ref.: #116515]	Continent	Middle and South America
[Ref.: #116515]	Isolation date	2010-01-04
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #116515]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caballeronia arvi LMG 29317	GCA_001544695	contig	GenBank	1777135 tax ID	*
[Ref.: #66792]	Burkholderia sp. strain LMG 29317	36773.24	wgs	PATRIC	36773 tax ID	*
[Ref.: #66792]	Caballeronia arvi LMG 29317	2724679466	draft	JGI IMG/M	1777135 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Burkholderia sp. strain LMG 29317 PATRIC: 36773.24
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Burkholderia sp. strain LMG 29317 PATRIC: 36773.24
[Ref.: #69480]	gram-positive	no	97.964	no
[Ref.: #69480]	anaerobic	no	98.279	no
[Ref.: #69480]	halophile	no	94.778	no
[Ref.: #69480]	spore-forming	no	92.754	no
[Ref.: #69480]	glucose-util	yes	89.274	no
[Ref.: #69480]	aerobic	yes	90.022	no
[Ref.: #69480]	motile	yes	88.246	no
[Ref.: #69480]	flagellated	no	81.688	no
[Ref.: #69480]	thermophile	no	99.503	no
[Ref.: #69480]	glucose-ferment	no	89.604	no

Availability in culture collections External links

[Ref.: #43568]

Culture collection no.

LMG 29317, CCUG 68412, CIP 111001

[Ref.: #96831]

SI-ID 410593

Literature:

	Title	Authors	Journal	DOI	Year
	Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.	Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P	Front Microbiol	10.3389/fmicb.2016.00877	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43568

Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour: Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.. IJSEM 67: 3846 - 3853 2017 ( DOI 10.1099/ijsem.0.002202 , PubMed 28879843 )

#63481 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 68412

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96831

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID410593.1 )

#116515 Collection of Institut Pasteur ; Curators of the CIP; CIP 111001
* These data were automatically processed and therefore are not curated

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Burkholderia sp. strain LMG 29317

Burkholderia sp. strain LMG 29317

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