Name: Arenivirga flava HIs16-32
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141004

Type strain:

Species: Arenivirga flava

Strain Designation: HIs16-32

Culture col. no.: NBRC 112289, TBRC 7038

NCBI tax ID(s): 1930060 (species)

Section

Arenivirga flava HIs16-32 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from sand sample from mangrove tidal flat on estuary of Kara River, Ishigaki Island, Okinawa, Japan.

colony-forming
Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Arenivirga*
	Species	**Arenivirga flava**
	Full Scientific Name (LPSN)	Arenivirga flava Hamada et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43894]	Gram stain	positive

[Ref.: #43894]	Cell length	1.1-2.1 µm

[Ref.: #43894]	Cell width	0.3-0.4 µm

[Ref.: #43894]	Cell shape	rod-shaped

[Ref.: #43894]	Motility	no

[Ref.: #43894]	Colony size	1.0-2.0 mm
[Ref.: #43894]	Colony color	yellow
[Ref.: #43894]	Colony shape	circular
[Ref.: #43894]	Incubation period	3 days
[Ref.: #43894]	Cultivation medium used	NBRC medium 802

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43894]

Culture medium

NBRC medium 802

[Ref.: #43894]

Culture medium growth

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Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #43894]		growth	10-28 °C
[Ref.: #43894]	no	growth	5 °C
[Ref.: #43894]	no	growth	37 °C
[Ref.: #43894]		optimum	25-28 °C

[Ref.: #43894]	Temperature range	psychrophilic
[Ref.: #43894]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43894]			optimum	7.0-8.0
[Ref.: #43894]			growth	6.0-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43894]

Oxygen tolerance

aerobe

[Ref.: #43894]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43894]		NaCl		growth	0-10	%(w/v)

[Ref.: #43894]

Observation

quinone MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43894]	amygdalin ChEBI	+	builds acid from
[Ref.: #43894]	arbutin ChEBI	+	builds acid from
[Ref.: #43894]	cellobiose ChEBI	+	builds acid from
[Ref.: #43894]	D-fructose ChEBI	+	builds acid from
[Ref.: #43894]	D-galactose ChEBI	+	builds acid from
[Ref.: #43894]	D-glucose ChEBI	+	builds acid from
[Ref.: #43894]	D-mannose ChEBI	+	builds acid from
[Ref.: #43894]	D-ribose ChEBI	+	builds acid from
[Ref.: #43894]	D-xylose ChEBI	+	builds acid from
[Ref.: #43894]	erythritol ChEBI	+	builds acid from
[Ref.: #43894]	esculin ChEBI	+	hydrolysis
[Ref.: #43894]	gelatin ChEBI	-	hydrolysis
[Ref.: #43894]	glycerol 3-phosphate ChEBI	+	builds acid from
[Ref.: #43894]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43894]	lactose ChEBI	+	builds acid from
[Ref.: #43894]	maltose ChEBI	+	builds acid from
[Ref.: #43894]	melibiose ChEBI	+	builds acid from
[Ref.: #43894]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #43894]	nitrate ChEBI	-	reduction
[Ref.: #43894]	raffinose ChEBI	+	builds acid from
[Ref.: #43894]	ribitol ChEBI	+	builds acid from
[Ref.: #43894]	salicin ChEBI	+	builds acid from
[Ref.: #43894]	sucrose ChEBI	+	builds acid from
[Ref.: #43894]	trehalose ChEBI	+	builds acid from
[Ref.: #43894]	turanose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43894]	acid phosphatase	+	3.1.3.2
[Ref.: #43894]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43894]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43894]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43894]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43894]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43894]	beta-galactosidase	+	3.2.1.23
[Ref.: #43894]	beta-glucosidase	+	3.2.1.21
[Ref.: #43894]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43894]	catalase	+	1.11.1.6
[Ref.: #43894]	chymotrypsin	-	3.4.4.5
[Ref.: #43894]	cystine arylamidase	-	3.4.11.3
[Ref.: #43894]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43894]	esterase (C 4)	+/-
[Ref.: #43894]	esterase Lipase (C 8)	+
[Ref.: #43894]	leucine arylamidase	+	3.4.11.1
[Ref.: #43894]	lipase (C 14)	-
[Ref.: #43894]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43894]	phosphohydrolase	+/-
[Ref.: #43894]	pyrazinamidase	+	3.5.1.B15
[Ref.: #43894]	pyrrolidonyl arylamidase	+/-	3.4.19.3
[Ref.: #43894]	trypsin	+/-	3.4.21.4
[Ref.: #43894]	urease	-	3.5.1.5
[Ref.: #43894]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43894]

Fatty acid	Percentage
C15:0	40.6
C17:0 anteiso	25.1
C16:0 iso	17.9
C16:0	5.6
C17:0	3.8
C15:0 iso	2.7
C15:0	2.1
C17:0 iso	1.4
C14:0 iso	0.7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43894]	Sample type/isolated from	sand sample from mangrove tidal flat on estuary of Kara River, Ishigaki Island, Okinawa, Japan
[Ref.: #43894]	Geographic location (country and/or sea, region)	Kara River, Ishigaki Island, Okinawa
[Ref.: #43894]	Country	Japan
[Ref.: #43894]	Country ISO 3 Code	JPN
[Ref.: #43894]	Continent	Asia
[Ref.: #43894]	Enrichment culture	NBRC medium 802
[Ref.: #43894]	Enrichment culture composition	1.0% Hipolypepton (Nihon Pharmaceutical), 0.2% yeast extract, 0.1% MgSO4.7H2O, 1.5% agar, pH 7.0
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sandy

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC203064 (>99% sequence identity) for Arenivirga flava subclade from Microbeatlas

Aquatic Samples	81
Soil Samples	204
Animal Samples	792
Plant Samples	100
Total Samples	1177

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43894]	16S rRNA gene sequence	LC203064		GenBank

[Ref.: #43894]

GC-content

72.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

NBRC 112289, TBRC 7038

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arenivirga flava gen. nov., sp. nov., a new member of the family Microbacteriaceae isolated from a mangrove tidal flat.	Hamada M, Saitou S, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.002113	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43894

Moriyuki Hamada, Satomi Saitou, Tomohiko Tamura: Arenivirga flava gen. nov., sp. nov., a new member of the family Microbacteriaceae isolated from a mangrove tidal flat. IJSEM 67: 3318 - 3322 2017 ( DOI 10.1099/ijsem.0.002113 , PubMed 28857028 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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