Alteromonas aestuariivivens (KCTC 52655, NBRC 112708, JDTF-113)

Name: Alteromonas aestuariivivens (KCTC 52655, NBRC 112708, JDTF-113)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140995

Type strain

Strain Designation JDTF-113

Culture col. no. KCTC 52655 NBRC 112708 JDTF-113

NCBI tax ID(s) 1938339

Special Collections KCTC Literature strains

History <- Jung-Hoon YOON, Sungkyunkwan Univ.

Links

Alteromonas aestuariivivens JDTF-113 is an aerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from tidal flat sediment in Jindo island, Yellow Sea, South Korea.

Gram-negative motile ovoid-shaped colony-forming aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 287495

KCTC 52655,NBRC 112708

@ref 20215

Last LPSN update 2026-02-09 11:33:46

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Alteromonas

Species Alteromonas aestuariivivens

Full scientific name Alteromonas aestuariivivens Park et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43881	negative	0.3-10.0 µm	0.2-0.6 µm	ovoid-shaped	polar
43881				rod-shaped
125439	negative					99.1
125438	negative					99.994

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43881	2.0-3.0 mm	brownish pink	circular	3 days	Marine agar 2216

Culture and growth conditions

Culture medium

@ref	Name	Growth
43881	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43881	positive	optimum	30	mesophilic
43881	positive	growth	10-40
43881	negative	growth	4
43881	negative	growth	45
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
43881	positive	optimum	7.0-8.0
43881	positive	growth	5.5
43881		growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43881	aerobe
67771	aerobe
125439	obligate aerobe	95.7

Spore formation

@ref	Spore formation	Confidence
43881
125439		98.6
125438		92.358

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43881	NaCl	positive	growth	0.5-9 %(w/v)
43881	NaCl	positive	optimum	2 %(w/v)

Observation

@ref	Observation
43881	Mg2+ ions are required for growth
43881	quinone Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43881	30089 ChEBI	acetate	+	carbon source
43881	16150 ChEBI	benzoate	-	carbon source
43881		casein	+	hydrolysis
43881	17057 ChEBI	cellobiose	+	builds acid from
43881	17057 ChEBI	cellobiose	+	carbon source
43881	16947 ChEBI	citrate	-	carbon source
43881	15824 ChEBI	D-fructose	-	builds acid from
43881	15824 ChEBI	D-fructose	-	carbon source
43881	12936 ChEBI	D-galactose	-	builds acid from
43881	12936 ChEBI	D-galactose	+	carbon source
43881	17634 ChEBI	D-glucose	+	builds acid from
43881	17634 ChEBI	D-glucose	+	carbon source
43881	16899 ChEBI	D-mannitol	-	builds acid from
43881	16024 ChEBI	D-mannose	-	builds acid from
43881	16024 ChEBI	D-mannose	-	carbon source
43881	16988 ChEBI	D-ribose	+	builds acid from
43881	17924 ChEBI	D-sorbitol	-	builds acid from
43881	65327 ChEBI	D-xylose	+	builds acid from
43881	65327 ChEBI	D-xylose	+	carbon source
43881		esculin ferric citrate	+	hydrolysis
43881	15740 ChEBI	formate	-	carbon source
43881	5291 ChEBI	gelatin	+	hydrolysis
43881	17368 ChEBI	hypoxanthine	+	hydrolysis
43881	30849 ChEBI	L-arabinose	-	builds acid from
43881	30849 ChEBI	L-arabinose	+	carbon source
43881	29985 ChEBI	L-glutamate	-	carbon source
43881	15589 ChEBI	L-malate	-	carbon source
43881	62345 ChEBI	L-rhamnose	+	builds acid from
43881	17895 ChEBI	L-tyrosine	+	hydrolysis
43881	17716 ChEBI	lactose	-	builds acid from
43881	17306 ChEBI	maltose	-	builds acid from
43881	17306 ChEBI	maltose	+	carbon source
43881	6731 ChEBI	melezitose	-	builds acid from
43881	28053 ChEBI	melibiose	-	builds acid from
43881	17268 ChEBI	myo-inositol	-	builds acid from
43881	17632 ChEBI	nitrate	+	reduction
43881	15361 ChEBI	pyruvate	+	carbon source
43881	16634 ChEBI	raffinose	-	builds acid from
43881	17814 ChEBI	salicin	+	carbon source
43881	28017 ChEBI	starch	-	hydrolysis
43881	30031 ChEBI	succinate	-	carbon source
43881	17992 ChEBI	sucrose	-	builds acid from
43881	17992 ChEBI	sucrose	+	carbon source
43881	27082 ChEBI	trehalose	-	builds acid from
43881	27082 ChEBI	trehalose	+	carbon source
43881	53426 ChEBI	tween 80	+	hydrolysis
43881	16199 ChEBI	urea	-	hydrolysis
43881	15318 ChEBI	xanthine	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
43881	28971	ampicillin	10 Unit (disc)
43881	3393	carbenicillin		100 µg (disc)
43881	124991	cefalotin	30 µg (disc)
43881	17698	chloramphenicol		100 µg (disc)
43881	17833	gentamicin		30 µg (disc)
43881	6104	kanamycin		30 µg (disc)
43881	6472	lincomycin	15 µg (disc)
43881	7507	neomycin		30 µg (disc)
43881	28368	novobiocin		5 µg (disc)
43881	16869	oleandomycin		15 µg (disc)
43881	18208	penicillin g	20 Unit (disc)
43881	8309	polymyxin b		100 Unit (disc)
43881	17076	streptomycin		50 µg (disc)
43881	27902	tetracycline		30 µg (disc)

Enzymes

@ref	Value	Activity	Ec
43881	acid phosphatase	+	3.1.3.2
43881	alkaline phosphatase	+	3.1.3.1
43881	catalase	+	1.11.1.6
43881	cystine arylamidase	+	3.4.11.3
43881	cytochrome oxidase	+	1.9.3.1
43881	esterase (C 4)	+
43881	esterase Lipase (C 8)	+
43881	leucine arylamidase	+	3.4.11.1
43881	naphthol-AS-BI-phosphohydrolase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	cyanate degradation	100	3 of 3
66794	threonine metabolism	100	10 of 10
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	adipate degradation	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	starch degradation	100	10 of 10
66794	biotin biosynthesis	100	4 of 4
66794	Entner Doudoroff pathway	100	10 of 10
66794	gluconeogenesis	100	8 of 8
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	butanoate fermentation	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	allantoin degradation	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	leucine metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	alanine metabolism	82.76	24 of 29
66794	pentose phosphate pathway	81.82	9 of 11
66794	flavin biosynthesis	80	12 of 15
66794	peptidoglycan biosynthesis	80	12 of 15
66794	methylglyoxal degradation	80	4 of 5
66794	glutathione metabolism	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	tyrosine metabolism	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	sulfopterin metabolism	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	CMP-KDO biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	purine metabolism	74.47	70 of 94
66794	proline metabolism	72.73	8 of 11
66794	d-xylose degradation	72.73	8 of 11
66794	degradation of hexoses	72.22	13 of 18
66794	citric acid cycle	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	pyrimidine metabolism	71.11	32 of 45
66794	lipid metabolism	70.97	22 of 31
66794	propionate fermentation	70	7 of 10
66794	histidine metabolism	68.97	20 of 29
66794	tryptophan metabolism	68.42	26 of 38
66794	IAA biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	methane metabolism	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	vitamin B6 metabolism	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	ketogluconate metabolism	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	urea cycle	61.54	8 of 13
66794	degradation of pentoses	60.71	17 of 28
66794	non-pathway related	60.53	23 of 38
66794	D-cycloserine biosynthesis	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	quinate degradation	50	1 of 2
66794	isoprenoid biosynthesis	50	13 of 26
66794	catecholamine biosynthesis	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	lysine metabolism	47.62	20 of 42
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	arachidonic acid metabolism	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	degradation of sugar acids	44	11 of 25
66794	polyamine pathway	43.48	10 of 23
66794	oxidative phosphorylation	41.76	38 of 91
66794	ascorbate metabolism	40.91	9 of 22
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	vitamin K metabolism	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	vitamin B1 metabolism	38.46	5 of 13
66794	metabolism of disaccharids	36.36	4 of 11
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	sulfate reduction	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	phenol degradation	30	6 of 20
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	toluene degradation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	carotenoid biosynthesis	22.73	5 of 22

Fatty acid profile

Metadata FA analysis

@ref

43881

Fatty acid	Percentage
C16:0	23.5
C16:1ω7c / C16:1ω6c	17.3
C18:1ω7c	13.6
C16:0N alcohol	4.8
C17:0	4.4
10-methyl C17:0	3.5
C14:0	3.4
C16:1 iso I / C14:0 3OH	3.3
C17:1ω8c	3
C10:0 3OH	2.1
C12:0	2
C18:0	1.5
C16:0 iso	1.4
C16:1ω7c alcohol	1.4
C12:1 3OH	1.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture temperature
43881	tidal flat sediment in Jindo island, Yellow Sea, South Korea	2015	Jindo island, Yellow Sea	Republic of Korea	KOR	Asia	Marine agar 2216	25
67771	From a tidal flat in Jindo, an island of South Korea			Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM336747v1 assembly for Alteromonas aestuariivivens KCTC 52655	contig	GCA_003367475	1938339.4	2834719733	1938339	66.92

16S sequences

@ref	Description	Accession	Database
43881	Alteromonas aestuariivivens strain JDTF-113 16S ribosomal RNA gene, partial sequence	KY497472

GC content

@ref	GC-content (mol%)	Method
43881	51.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alteromonas aestuariivivens KCTC 52655
NCBI: GCA_003367475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.60	no
125439	motility	BacteriaNetⓘ	yes	79.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alteromonas aestuariivivens strain KCTC 52655
PATRIC: 1938339.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.99	yes
125438	anaerobic	anaerobicⓘ	no	94.44	no
125438	spore-forming	spore-formingⓘ	no	92.36	yes
125438	aerobic	aerobicⓘ	yes	75.77	no
125438	thermophilic	thermophileⓘ	no	96.98	yes
125438	flagellated	motile2+ⓘ	yes	84.78	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alteromonas sediminis sp. nov., isolated from sediment in a sea cucumber culture pond.	Ye MQ, Han JR, Wang C, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003358	2019
Phylogeny	Alteromonas flava sp. nov. and Alteromonas facilis sp. nov., two novel copper tolerating bacteria isolated from a sea cucumber culture pond in China.	Zhang J, Wang C, Han JR, Chen GJ, Du ZJ	Syst Appl Microbiol	10.1016/j.syapm.2018.11.006	2018
Phylogeny	Alteromonas aestuariivivens sp. nov., isolated from a tidal flat.	Park S, Choi SJ, Park JM, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002023	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43881	Sooyeon Park, Su Jung Choi, Ji-Min Park, Jung-Hoon Yoon: Alteromonas aestuariivivens sp. nov., isolated from a tidal flat. IJSEM 67: 2791 - 2797 2017 ( DOI 10.1099/ijsem.0.002023 , PubMed 28820089 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alteromonas aestuariivivens (KCTC 52655, NBRC 112708, JDTF-113)

Name and taxonomic classification