Name: Defluviimonas nitratireducens DL5-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140990

Type strain:

Species: Defluviimonas nitratireducens

Strain Designation: DL5-4

Culture col. no.: MCCC 1A06955, LMG 29616

NCBI tax ID(s): 1928646 (species)

Section

Defluviimonas nitratireducens DL5-4 is a facultative aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from surface seawater of Dalian Bay, PR China.

colony-forming
Gram-negative
rod-shaped
facultative aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Defluviimonas*
	Species	**Defluviimonas nitratireducens**
	Full Scientific Name (LPSN)	Defluviimonas nitratireducens Liu et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43877]	Gram stain	negative

[Ref.: #43877]	Cell length	0.9-1.3 µm

[Ref.: #43877]	Cell width	0.7-0.8 µm

[Ref.: #43877]	Cell shape	rod-shaped

[Ref.: #43877]	Motility	no

[Ref.: #43877]	Colony size	0.5-1.0 mm
[Ref.: #43877]	Colony color	brown
[Ref.: #43877]	Colony shape	circular
[Ref.: #43877]	Incubation period	3 days
[Ref.: #43877]	Cultivation medium used	Marine agar 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43877]

Culture medium

Marine agar (MA)

[Ref.: #43877]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43877]			growth	8-40 °C
[Ref.: #43877]			optimum	28-30 °C

[Ref.: #43877]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43877]			optimum	7
[Ref.: #43877]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43877]

Oxygen tolerance

facultative aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43877]		NaCl		growth	0-7	%(w/v)
[Ref.: #43877]		NaCl		optimum	1-3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43877]	2-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #43877]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #43877]	acetate ChEBI	+	carbon source
[Ref.: #43877]	adipate ChEBI	-	carbon source
[Ref.: #43877]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43877]	amygdalin ChEBI	-	builds acid from
[Ref.: #43877]	arabinose ChEBI	-	builds acid from
[Ref.: #43877]	beta-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #43877]	cellobiose ChEBI	+	builds acid from
[Ref.: #43877]	cellobiose ChEBI	+	carbon source
[Ref.: #43877]	citrate ChEBI	+	carbon source
[Ref.: #43877]	D-arabitol ChEBI	+	builds acid from
[Ref.: #43877]	D-arabitol ChEBI	+	carbon source
[Ref.: #43877]	D-fructose ChEBI	+	builds acid from
[Ref.: #43877]	D-fructose ChEBI	+	carbon source
[Ref.: #43877]	D-fucose ChEBI	+	builds acid from
[Ref.: #43877]	D-glucose ChEBI	+	builds acid from
[Ref.: #43877]	D-glucose ChEBI	+	carbon source
[Ref.: #43877]	D-glucose ChEBI	+/-	fermentation
[Ref.: #43877]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43877]	D-mannitol ChEBI	+	carbon source
[Ref.: #43877]	D-mannitol ChEBI	+/-	builds acid from
[Ref.: #43877]	D-mannose ChEBI	-	carbon source
[Ref.: #43877]	D-psicose ChEBI	+	carbon source
[Ref.: #43877]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #43877]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43877]	decanoate ChEBI	-	carbon source
[Ref.: #43877]	esculin ferric citrate	+	hydrolysis
[Ref.: #43877]	gamma-cyclodextrin ChEBI	+	carbon source
[Ref.: #43877]	gelatin ChEBI	-	hydrolysis
[Ref.: #43877]	glucose ChEBI	-	builds acid from
[Ref.: #43877]	glycerol ChEBI	+	carbon source
[Ref.: #43877]	glycogen ChEBI	+	carbon source
[Ref.: #43877]	L-alanine 4-nitroanilide	+	carbon source
[Ref.: #43877]	L-arabinose ChEBI	-	carbon source
[Ref.: #43877]	L-proline ChEBI	+	carbon source
[Ref.: #43877]	lactate ChEBI	+	carbon source
[Ref.: #43877]	lactose ChEBI	+	carbon source
[Ref.: #43877]	malate ChEBI	+	builds acid from
[Ref.: #43877]	malate ChEBI	+	carbon source
[Ref.: #43877]	maltose ChEBI	+	builds acid from
[Ref.: #43877]	maltose ChEBI	+	carbon source
[Ref.: #43877]	maltose hydrate	+	builds acid from
[Ref.: #43877]	mannitol ChEBI	-	builds acid from
[Ref.: #43877]	melibiose ChEBI	-	builds acid from
[Ref.: #43877]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #43877]	monomethyl succinate ChEBI	+	carbon source
[Ref.: #43877]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43877]	myo-inositol ChEBI	+	carbon source
[Ref.: #43877]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43877]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43877]	nitrate ChEBI	+	reduction
[Ref.: #43877]	phenylacetate ChEBI	-	carbon source
[Ref.: #43877]	potassium gluconate ChEBI	-	carbon source
[Ref.: #43877]	propionate ChEBI	+	carbon source
[Ref.: #43877]	quinate ChEBI	+	carbon source
[Ref.: #43877]	rhamnose ChEBI	-	builds acid from
[Ref.: #43877]	salicin ChEBI	+/-	builds acid from
[Ref.: #43877]	sodium citrate ChEBI	+	builds acid from
[Ref.: #43877]	sodium citrate ChEBI	+	carbon source
[Ref.: #43877]	sorbitol ChEBI	-	builds acid from
[Ref.: #43877]	starch ChEBI	+	builds acid from
[Ref.: #43877]	succinamate ChEBI	+	carbon source
[Ref.: #43877]	succinate ChEBI	+	carbon source
[Ref.: #43877]	sucrose ChEBI	-	builds acid from
[Ref.: #43877]	sucrose ChEBI	+	builds acid from
[Ref.: #43877]	sucrose ChEBI	+	carbon source
[Ref.: #43877]	trehalose ChEBI	+	builds acid from
[Ref.: #43877]	trehalose ChEBI	+	carbon source
[Ref.: #43877]	turanose ChEBI	+	builds acid from
[Ref.: #43877]	turanose ChEBI	+	carbon source
[Ref.: #43877]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43877]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43877]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43877]	cefazolin ChEBI	yes	30	µg (disc)
[Ref.: #43877]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #43877]	cephalexin ChEBI	yes	30	µg (disc)
[Ref.: #43877]	cephradine ChEBI	yes	30	µg (disc)
[Ref.: #43877]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43877]	clindamycin ChEBI				yes	2	µg (disc)
[Ref.: #43877]	co-trimoxazole ChEBI				yes	25	µg (disc)
[Ref.: #43877]	erythromycin ChEBI				yes	15	µg (disc)
[Ref.: #43877]	furazolidone ChEBI	yes	15	µg (disc)
[Ref.: #43877]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43877]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43877]	norfloxacin ChEBI				yes	10	µg (disc)
[Ref.: #43877]	ofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43877]	oxacillin ChEBI	yes	1	µg (disc)
[Ref.: #43877]	penicillin g ChEBI	yes	10	µg (disc)
[Ref.: #43877]	piperacillin ChEBI	yes	100	µg (disc)
[Ref.: #43877]	polymyxin b ChEBI	yes	30	Unit (disc)
[Ref.: #43877]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43877]	streptomycin ChEBI				yes	10	µg (disc)
[Ref.: #43877]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43877]	vancomycin ChEBI				yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43877]	acetoin ChEBI	yes
[Ref.: #43877]	hydrogen sulfide ChEBI	no
[Ref.: #43877]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43877]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #43877]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #43877]	acid phosphatase	+	3.1.3.2
[Ref.: #43877]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43877]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43877]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43877]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43877]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43877]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43877]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43877]	beta-galactosidase	-	3.2.1.23
[Ref.: #43877]	beta-glucosidase	-	3.2.1.21
[Ref.: #43877]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43877]	catalase	+	1.11.1.6
[Ref.: #43877]	cystine arylamidase	+	3.4.11.3
[Ref.: #43877]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43877]	esterase (C 4)	+
[Ref.: #43877]	esterase Lipase (C 8)	+
[Ref.: #43877]	gelatinase	-
[Ref.: #43877]	leucine arylamidase	+	3.4.11.1
[Ref.: #43877]	lipase	+
[Ref.: #43877]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43877]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43877]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43877]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43877]	trypsin	-	3.4.21.4
[Ref.: #43877]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43877]	urease	-	3.5.1.5
[Ref.: #43877]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43877]

Fatty acid	Percentage
C18:1ω7c / C18:1ω6c	90.3
C18:0	3.4
C16:1ω7c / C16:1ω6c	2.2
C16:0	1.5
unknown 18.846 / C19:1ω6c	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43877]	Sample type/isolated from	surface seawater of Dalian Bay, PR China
[Ref.: #43877]	Geographic location (country and/or sea, region)	Dalian Bay
[Ref.: #43877]	Country	China
[Ref.: #43877]	Country ISO 3 Code	CHN
[Ref.: #43877]	Continent	Asia
[Ref.: #43877]	Geographic location	38.9667°/124.7670°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF146513 (>99% sequence identity) for Defluviimonas nitratireducens subclade from Microbeatlas

Aquatic Samples	105
Soil Samples	9
Animal Samples	11
Plant Samples	2
Total Samples	127

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43877]	16S rRNA gene sequence	KF146513		GenBank

[Ref.: #43877]

GC-content

63.8 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43877]

Culture collection no.

MCCC 1A06955, LMG 29616

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Defluviimonas nitratireducens sp. nov., isolated from surface seawater.	Liu Y, Lai Q, Wang W, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002015	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43877

Yang Liu, Qiliang Lai, Wanpeng Wang, Zongze Shao: Defluviimonas nitratireducens sp. nov., isolated from surface seawater. IJSEM 67: 2752 - 2757 2017 ( DOI 10.1099/ijsem.0.002015 , PubMed 28809144 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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