Pseudomonas wadenswilerensis (LMG 29327, CCOS 864, CIP 111526)

Name: Pseudomonas wadenswilerensis (LMG 29327, CCOS 864, CIP 111526)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140982

Type strain

Strain Designation ID2

Culture col. no. LMG 29327 CCOS 864 CIP 111526 ID2

NCBI tax ID(s) 1785161

Special Collections Literature strains CIP

History CIP <- 2017, CCOS <- M. Opoku, ZHAW, Wädenswil, Switzerland: strain ID2

Links

Pseudomonas wadenswilerensis ID2 is an aerobe, chemoorganotroph, Gram-negative bacterium that was isolated from soil sample of Reidholz forest between the cities Wädenswil and Richterswil, Switzerland.

Gram-negative motile rod-shaped aerobe chemoorganotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 412731

LMG 29327,CIP 111526

@ref 20215

Last LPSN update 2026-05-29 08:39:51

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas wadenswilerensis

Full scientific name Pseudomonas wadenswilerensis Frasson et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
43871	negative	1.0-2.2 µm	0.5-0.9 µm	rod-shaped
123898	negative			rod-shaped
125438	negative				98.5
125439					90.82
125439	negative				98.989

Pigmentation

@ref	Production	Name
43871		fluorescent pigment

Culture and growth conditions

Culture medium

@ref	Name	Medium link
43871	King's medium B
43871	LB (Luria-Bertani) MEDIUM
43871	Reasoner's 2A agar (R2A)
123898	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
43871	positive	growth	4-37
43871	positive	optimum	25-30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43871	aerobe
125438	aerobe	90.098
125439	obligate aerobe	96.924

Nutrition type

43871

Typechemoorganotroph

Spore formation

@ref	Spore formation	Confidence
43871
125439		99.861

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43871	NaCl	positive	growth	0-6 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43871	30916 ChEBI	2-oxoglutarate	+	carbon source
43871	18240 ChEBI	4-hydroxy-L-proline	+	carbon source
43871	18101 ChEBI	4-hydroxyphenylacetic acid	+	carbon source
43871	30089 ChEBI	acetate	+	carbon source
43871	17925 ChEBI	alpha-D-glucose	+	carbon source
43871	8295 ChEBI	beta-hydroxybutyrate	+	carbon source
43871	73706 ChEBI	bromosuccinate	+	carbon source
43871	16383 ChEBI	cis-aconitate	+	carbon source
43871	16947 ChEBI	citrate	+	carbon source
43871	15570 ChEBI	D-alanine	+	carbon source
43871	18333 ChEBI	D-arabitol	-	carbon source
43871	15824 ChEBI	D-fructose	+	carbon source
43871	18024 ChEBI	D-galacturonic acid	-	carbon source
43871	8391 ChEBI	D-gluconate	+	carbon source
43871	15748 ChEBI	D-glucuronate	-	carbon source
43871	16899 ChEBI	D-mannitol	-	carbon source
43871	33801 ChEBI	D-saccharate	-	carbon source
43871	16523 ChEBI	D-serine	+	carbon source
43871	27689 ChEBI	decanoate	-	carbon source
43871	17126 ChEBI	DL-carnitine	+	carbon source
43871	16000 ChEBI	ethanolamine	+	carbon source
43871	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
43871	17234 ChEBI	glucose	-	carbon source
43871	17234 ChEBI	glucose	+	oxidation
43871	32323 ChEBI	glucuronamide	+	carbon source
43871	17754 ChEBI	glycerol	+	carbon source
43871	73784 ChEBI	glycyl-l-glutamate	+	carbon source
43871	17596 ChEBI	inosine	+	carbon source
43871	16977 ChEBI	L-alanine	+	carbon source
43871	73786 ChEBI	L-alanylglycine	+	carbon source
43871	30849 ChEBI	L-arabinose	-	carbon source
43871	17196 ChEBI	L-asparagine	+	carbon source
43871	29991 ChEBI	L-aspartate	+	carbon source
43871	29985 ChEBI	L-glutamate	+	carbon source
43871	15971 ChEBI	L-histidine	+	carbon source
43871	15603 ChEBI	L-leucine	+	carbon source
43871	17203 ChEBI	L-proline	+	carbon source
43871	18183 ChEBI	L-pyroglutamic acid	+	carbon source
43871	17115 ChEBI	L-serine	+	carbon source
43871	24996 ChEBI	lactate	+	carbon source
43871	25115 ChEBI	malate	-	carbon source
43871	28053 ChEBI	melibiose	+	oxidation
43871	51850 ChEBI	methyl pyruvate	+	carbon source
43871	30860 ChEBI	methylmalonic acid	-	carbon source
43871	506227 ChEBI	N-acetylglucosamine	+	carbon source
43871	17632 ChEBI	nitrate	+	reduction
43871	18401 ChEBI	phenylacetate	-	assimilation
43871	17272 ChEBI	propionate	+	carbon source
43871	17148 ChEBI	putrescine	+	carbon source
43871	26490 ChEBI	quinate	+	carbon source
43871		skimmed milk	+	hydrolysis
43871	53258 ChEBI	sodium citrate	-	carbon source
43871	30031 ChEBI	succinate	+	carbon source
43871	17992 ChEBI	sucrose	-	carbon source
43871	53423 ChEBI	tween 40	+	carbon source
43871	53426 ChEBI	tween 80	+	carbon source
43871	27248 ChEBI	urocanic acid	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43871	31624 ChEBI	fluorescein

Enzymes

@ref	Value	Activity	Ec
43871	acid phosphatase	+	3.1.3.2
43871	arginine dihydrolase	+	3.5.3.6
43871	catalase	+	1.11.1.6
43871	cytochrome oxidase	+	1.9.3.1
43871	esterase Lipase (C 8)	+
43871	gelatinase	+
43871	leucine arylamidase	+	3.4.11.1
43871	naphthol-AS-BI-phosphohydrolase	+
43871	tryptophan deaminase	+	4.1.99.1

Fatty acid profile

Metadata FA analysis

@ref

43871

Fatty acid	Percentage
C16:0	38.38
C17:0 cyclo	22.85
C16:1ω7c / C16:1ω6c	20.89
C18:1ω7c	10.14
C14:0	1.08
C10:0 3OH	0.88
C12:0 2OH	0.49
C18:0	0.31
C12:1 3OH	0.26
C19:0ω8c cyclo	0.24
C12:0	0.21
C16:1ω5c	0.13

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Isolation date
43871	soil sample of Reidholz forest between the cities Wädenswil and Richterswil, Switzerland	Reidholz forest	Switzerland	CHE	Europe	47.2167	8.68333 47.2167/8.68333	King's B medium
123898	Environment, Forest soil	Wädenswil	Switzerland	CHE	Europe				2014-06-30

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
123898	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	PWADCCOS864 assembly for Pseudomonas wadenswilerensis CCOS 864	contig	GCA_900497695	1785161.3	8034972598	1785161	75.52

16S sequences

@ref	Description	Accession	Database
43871	Pseudomonas sp. CCOS 864 partial 16S rRNA gene, strain CCOS 864, isolate ID2	LT009706

GC content

@ref	GC-content (mol%)	Method
43871	62.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: PWADCCOS864 assembly for Pseudomonas wadenswilerensis CCOS 864
NCBI: GCA_900497695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.92	no
125439	gram_stain	BacteriaNetⓘ	negative	98.99	no
125439	motility	BacteriaNetⓘ	yes	90.82	no
125439	spore_formation	BacteriaNetⓘ	no	99.86	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas wadenswilerensis strain CCOS 864
PATRIC: 1785161.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	yes
125438	anaerobic	anaerobicⓘ	no	98.92	yes
125438	spore-forming	spore-formingⓘ	no	84.69	yes
125438	aerobic	aerobicⓘ	yes	90.10	yes
125438	thermophilic	thermophileⓘ	no	97.50	no
125438	flagellated	motile2+ⓘ	yes	88.31	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	High-Quality Draft Genome Sequence of Pseudomonas wadenswilerensis CCOS 864(T).	Rutz D, Frasson D, Sievers M, Blom J, Rezzonico F, Pothier JF, Smits THM	Microbiol Resour Announc	10.1128/MRA.01059-18	2018
	Pseudomonas palmensis sp. nov., a Novel Bacterium Isolated From Nicotiana glauca Microbiome: Draft Genome Analysis and Biological Potential for Agriculture.	Gutierrez-Albanchez E, Garcia-Villaraco A, Lucas JA, Horche I, Ramos-Solano B, Gutierrez-Manero FJ.	Front Microbiol	10.3389/fmicb.2021.672751	2021
Phylogeny	Pseudomonas tructae sp. nov., novel species isolated from rainbow trout kidney.	Oh WT, Jun JW, Giri SS, Yun S, Kim HJ, Kim SG, Kim SW, Kang JW, Han SJ, Kwon J, Kim JH, Smits THM, Park SC	Int J Syst Evol Microbiol	10.1099/ijsem.0.003696	2019
Phylogeny	Pseudomonas wadenswilerensis sp. nov. and Pseudomonas reidholzensis sp. nov., two novel species within the Pseudomonas putida group isolated from forest soil.	Frasson D, Opoku M, Picozzi T, Torossi T, Balada S, Smits THM, Hilber U	Int J Syst Evol Microbiol	10.1099/ijsem.0.002035	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43871	David Frasson, Michael Opoku, Tara Picozzi, Tanja Torossi, Stefanie Balada, Theo H. M. Smits, Urs Hilber: Pseudomonas wadenswilerensis sp. nov. and Pseudomonas reidholzensis sp. nov., two novel species within the Pseudomonas putida group isolated from forest soil. IJSEM 67: 2853 - 2861 2017 ( DOI 10.1099/ijsem.0.002035 , PubMed 28820109 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#123898	Collection of Institut Pasteur ; Curators of the CIP; CIP 111526
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas wadenswilerensis (LMG 29327, CCOS 864, CIP 111526)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900497695

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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