Salipiger pallidus (KCTC 52369, MCCC 1K03197, JCM 31458)

Name: Salipiger pallidus (KCTC 52369, MCCC 1K03197, JCM 31458)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140981

Type strain

Strain Designation DCSW07

Culture col. no. KCTC 52369 MCCC 1K03197 JCM 31458 CGMCC 1.15762 DSM 108666 1 more

NCBI tax ID(s) 1775170

Special Collections DSMZ JCM KCTC Literature strains

Links

Salipiger pallidus DCSW07 is an aerobe, Gram-negative, motile prokaryote that forms circular colonies and was isolated from From surface seawater of the Bohai Sea.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406006

KCTC 52369,JCM 31458,DSM 108666

@ref 20215

Last LPSN update 2025-12-16 10:03:44

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Salipiger

Species Salipiger pallidus

Full scientific name Salipiger pallidus (Cai et al. 2017) Du et al. 2021

Synonyms (1)

Paraphaeobacter pallidus

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43870	negative	1.8-2.2 µm	0.4-0.5 µm	rod-shaped	polar
125439	negative					96.9
125438	negative					98.833

Colony morphology

@ref	Colony color	Colony shape	Medium used
43870	light orange	circular	Marine agar 2216

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43870	Marine agar (MA)
64869	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43870	positive	growth	10-45
43870	positive	optimum	28	mesophilic
64869	positive	growth	28	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43870	positive	optimum	6
43870	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43870	aerobe
67771	aerobe
125439	aerobe	91.5

Spore formation

@ref	Spore formation	Confidence
125439		98.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43870	NaCl	positive	growth	0-15 %(w/v)
43870	NaCl	positive	optimum	6 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43870	30916 ChEBI	2-oxoglutarate	+	carbon source
43870		3-O-methyl alpha-D-glucopyranoside	+	builds acid from
43870	30089 ChEBI	acetate	+	carbon source
43870	15688 ChEBI	acetoin	+/-	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
43870	17925 ChEBI	alpha-D-glucose	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
43870	73706 ChEBI	bromosuccinate	+	carbon source
43870	17057 ChEBI	cellobiose	+	builds acid from
43870	16947 ChEBI	citrate	+	carbon source
43870	15570 ChEBI	D-alanine	+	carbon source
43870	17108 ChEBI	D-arabinose	+	builds acid from
43870	15824 ChEBI	D-fructose	+	builds acid from
43870	15824 ChEBI	D-fructose	+	carbon source
43870	12936 ChEBI	D-galactose	+	builds acid from
43870	17634 ChEBI	D-glucose	+	builds acid from
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
43870	14314 ChEBI	D-glucose 6-phosphate	+	carbon source
43870	62318 ChEBI	D-lyxose	+	builds acid from
43870	16899 ChEBI	D-mannitol	-	carbon source
43870	16899 ChEBI	D-mannitol	+	builds acid from
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
43870	16024 ChEBI	D-mannose	-	builds acid from
43870	16024 ChEBI	D-mannose	+	carbon source
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
43870	27605 ChEBI	D-psicose	+	carbon source
43870	16988 ChEBI	D-ribose	+	builds acid from
43870	16523 ChEBI	D-serine	+	carbon source
43870	17924 ChEBI	D-sorbitol	-	carbon source
43870	16443 ChEBI	D-tagatose	+	builds acid from
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
43870		esculin ferric citrate	+	builds acid from
43870	495056 ChEBI	gamma-cyclodextrin	+	carbon source
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
43870	28066 ChEBI	gentiobiose	+	carbon source
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
43870	17754 ChEBI	glycerol	+	builds acid from
43870	17754 ChEBI	glycerol	+	carbon source
43870	14336 ChEBI	glycerol 1-phosphate	+	carbon source
43870	28087 ChEBI	glycogen	+	builds acid from
43870	28087 ChEBI	glycogen	+	carbon source
43870	73804 ChEBI	glycyl L-aspartic acid	+	carbon source
43870	17596 ChEBI	inosine	+	carbon source
43870	21217 ChEBI	L-alaninamide	+	carbon source
43870	16977 ChEBI	L-alanine	+	carbon source
43870	30849 ChEBI	L-arabinose	+	builds acid from
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
43870	16467 ChEBI	L-arginine	-	builds acid from
43870	29991 ChEBI	L-aspartate	+	carbon source
43870	18287 ChEBI	L-fucose	+	builds acid from
43870	15971 ChEBI	L-histidine	+	carbon source
43870	15603 ChEBI	L-leucine	-	builds acid from
43870	17203 ChEBI	L-proline	+	carbon source
43870	17115 ChEBI	L-serine	+	carbon source
43870	16857 ChEBI	L-threonine	+	carbon source
43870	24996 ChEBI	lactate	+	carbon source
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
43870	17306 ChEBI	maltose	-	builds acid from
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
43870		maltose hydrate	+	carbon source
43870	28053 ChEBI	melibiose	+	builds acid from
43870	320055 ChEBI	methyl beta-D-glucopyranoside	+	carbon source
43870	74863 ChEBI	methyl beta-D-xylopyranoside	+	builds acid from
43870	51850 ChEBI	methyl pyruvate	+	carbon source
43870	75146 ChEBI	monomethyl succinate	+	carbon source
43870	17268 ChEBI	myo-inositol	+	builds acid from
43870	44337 ChEBI	N-acetyl-L-glutamate	+	carbon source
43870	506227 ChEBI	N-acetylglucosamine	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
43870	17272 ChEBI	propionate	+	carbon source
43870	17814 ChEBI	salicin	+	builds acid from
43870	143136 ChEBI	succinamate	+	carbon source
43870	30031 ChEBI	succinate	+	carbon source
43870	17992 ChEBI	sucrose	-	builds acid from
43870	17992 ChEBI	sucrose	+	builds acid from
43870	17992 ChEBI	sucrose	+	carbon source
43870	17748 ChEBI	thymidine	+	carbon source
43870	27082 ChEBI	trehalose	-	builds acid from
43870	27082 ChEBI	trehalose	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
43870	32528 ChEBI	turanose	+	builds acid from
43870	53423 ChEBI	tween 40	+	carbon source
43870	53426 ChEBI	tween 80	+	carbon source
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE
43870	16704 ChEBI	uridine	+	carbon source
43870	18222 ChEBI	xylose	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43870	15688 ChEBI	acetoin
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
43870	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
43870	alpha-chymotrypsin	+	3.4.21.1
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
43870	alpha-galactosidase	+	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
43870	alpha-glucosidase	+	3.2.1.20
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
43870	beta-glucuronidase	+	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
43870	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
43870	esterase (C 4)	+
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68369	gelatinase	-		from API 20NE
43870	leucine arylamidase	+	3.4.11.1
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
43870	N-acetyl-beta-glucosaminidase	+	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
43870	trypsin	+	3.4.21.4
68382	trypsin	-	3.4.21.4	from API zym
43870	urease	+	3.5.1.5
68369	urease	+	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

43870

Fatty acid	Percentage
C18:1ω7c	68.27
C16:0	7.28
C10:0 3OH	6.62
C19:0ω8c cyclo	5.89
C16:1ω7c / C15:0 iso 2OH	5.52
C12:1 3OH	1.62
C17:0 cyclo	1.37
11-methyl C18:1ω7c	1.37

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
64869	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
64869	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
67771	From surface seawater of the Bohai Sea		China	CHN	Asia
43870	surface water of Bohai Sea, China	Bohai Sea	China	CHN	Asia	39.05	119.92 39.05/119.92	Marine agar 2216	4 days	28
64869	surface seawater	Bohai Sea, station B60 (39° 3' 00'' N, 119° 55' 12'' E)	China	CHN	Asia	39.05	119.92 39.05/119.92
67770	Surface water of the Bohai Sea		China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64869	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464363v1 assembly for Salipiger pallidus CGMCC 1.15762	contig	GCA_014643635	1775170.3	2995441687	1775170	74.66

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64869	Salipiger pallidus 16S ribosomal RNA gene, partial sequence	KU315483	1425		1775170

GC content

@ref	GC-content (mol%)	Method
43870	64.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salipiger pallidus CGMCC 1.15762
NCBI: GCA_014643635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.20	no
125439	motility	BacteriaNetⓘ	yes	66.60	no
125439	gram_stain	BacteriaNetⓘ	negative	96.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	91.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paraphaeobacter pallidus strain CGMCC 1.15762
PATRIC: 1775170.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.83	yes
125438	anaerobic	anaerobicⓘ	no	96.01	yes
125438	spore-forming	spore-formingⓘ	no	87.84	no
125438	aerobic	aerobicⓘ	yes	83.31	yes
125438	thermophilic	thermophileⓘ	no	98.66	yes
125438	flagellated	motile2+ⓘ	yes	74.87	yes

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43870	Xiulei Cai, Yanan Wang, Xiaoting Yang, Ji Liu, Yanhong Wu, Xiao-Hua Zhang: Paraphaeobacter pallidus gen. nov., sp. nov., isolated from seawater. IJSEM 67: 2520 - 2526 2017 ( DOI 10.1099/ijsem.0.001935 , PubMed 28809139 )
#64869	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108666
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salipiger pallidus (KCTC 52369, MCCC 1K03197, JCM 31458)

Name and taxonomic classification