Name: Arenimonas soli Y3L17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140971

Type strain:

Species: Arenimonas soli

Strain Designation: Y3L17

Culture col. no.: CGMCC 1.15905, KCTC 52420

Strain history: <- SUN, Ji-Quan, Peking Univ.

NCBI tax ID(s): 2269504 (species)

Section

Arenimonas soli Y3L17 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from saline-alkaline soil from farmland in Hangjin Banner, Ordos, Inner Mongolia, northern China.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Arenimonas*
	Species	**Arenimonas soli**
	Full Scientific Name (LPSN)	Arenimonas soli Xu et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43863]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.979

[Ref.: #43863]	Cell length	0.8-1.3 µm

[Ref.: #43863]	Cell width	0.3-0.4 µm

[Ref.: #43863]	Cell shape	rod-shaped

[Ref.: #43863]	Motility	no

[Ref.: #43863]	Colony size	1 mm
[Ref.: #43863]	Colony color	yellow
[Ref.: #43863]	Colony shape	circular
[Ref.: #43863]	Incubation period	5 days
[Ref.: #43863]	Cultivation medium used	Luria-Bertani agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43863]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43863]

Culture medium growth

[Ref.: #43863]

Culture medium

Tryptic soy agar

[Ref.: #43863]

Culture medium growth

		Temperature
[Ref.: #43863]	growth	15-45 °C
[Ref.: #43863]	optimum	35 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #43863]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43863]			optimum	8
[Ref.: #43863]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43863]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43863]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43863]		NaCl		growth	0-4	%(w/v)
[Ref.: #43863]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43863]	acetate ChEBI	-	assimilation
[Ref.: #43863]	adipate ChEBI	-	assimilation
[Ref.: #43863]	aspartate ChEBI	-	assimilation
[Ref.: #43863]	butanol ChEBI	-	assimilation
[Ref.: #43863]	citrate ChEBI	-	assimilation
[Ref.: #43863]	creatine ChEBI	-	assimilation
[Ref.: #43863]	D-fructose ChEBI	+	assimilation
[Ref.: #43863]	D-glucose ChEBI	-	assimilation
[Ref.: #43863]	D-mannose ChEBI	+	assimilation
[Ref.: #43863]	D-xylose ChEBI	-	assimilation
[Ref.: #43863]	decanoate ChEBI	-	assimilation
[Ref.: #43863]	ethanol ChEBI	-	assimilation
[Ref.: #43863]	gelatin ChEBI	+	hydrolysis
[Ref.: #43863]	glucose ChEBI	+	assimilation
[Ref.: #43863]	glucose ChEBI	+	fermentation
[Ref.: #43863]	L-arabinose ChEBI	-	assimilation
[Ref.: #43863]	L-arginine ChEBI	-	assimilation
[Ref.: #43863]	L-glutamate ChEBI	-	assimilation
[Ref.: #43863]	L-leucine ChEBI	-	assimilation
[Ref.: #43863]	L-malate ChEBI	-	assimilation
[Ref.: #43863]	L-phenylalanine ChEBI	-	assimilation
[Ref.: #43863]	L-proline ChEBI	+	assimilation
[Ref.: #43863]	L-rhamnose ChEBI	+	assimilation
[Ref.: #43863]	L-serine ChEBI	-	assimilation
[Ref.: #43863]	lactose ChEBI	-	assimilation
[Ref.: #43863]	malonate ChEBI	-	assimilation
[Ref.: #43863]	maltose ChEBI	-	assimilation
[Ref.: #43863]	methanol ChEBI	-	assimilation
[Ref.: #43863]	myo-inositol ChEBI	-	assimilation
[Ref.: #43863]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43863]	nitrate ChEBI	-	reduction
[Ref.: #43863]	phenylacetate ChEBI	-	assimilation
[Ref.: #43863]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43863]	sodium citrate ChEBI	-	assimilation
[Ref.: #43863]	sucrose ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43863]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43863]	acid phosphatase	+	3.1.3.2
[Ref.: #43863]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43863]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43863]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43863]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43863]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43863]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43863]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43863]	beta-galactosidase	-	3.2.1.23
[Ref.: #43863]	beta-glucosidase	-	3.2.1.21
[Ref.: #43863]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43863]	catalase	-	1.11.1.6
[Ref.: #43863]	cystine arylamidase	-	3.4.11.3
[Ref.: #43863]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43863]	esterase (C 4)	+
[Ref.: #43863]	esterase Lipase (C 8)	+
[Ref.: #43863]	leucine arylamidase	+	3.4.11.1
[Ref.: #43863]	lipase (C 14)	-
[Ref.: #43863]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43863]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43863]	trypsin	-	3.4.21.4
[Ref.: #43863]	urease	+	3.5.1.5
[Ref.: #43863]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43863]	Sample type/isolated from	saline-alkaline soil from farmland in Hangjin Banner, Ordos, Inner Mongolia, northern China
[Ref.: #43863]	Geographic location (country and/or sea, region)	Hangjin Banner, Ordos, Inner Mongolia
[Ref.: #43863]	Country	China
[Ref.: #43863]	Country ISO 3 Code	CHN
[Ref.: #43863]	Continent	Asia
[Ref.: #43863]	Geographic location	40.0700°/107.8230°
[Ref.: #43863]	Enrichment culture	Luria-Bertani agar

[Ref.: #67771]	Sample type/isolated from	From saline-alkaline soil, Farmland soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Ordos, Inner Mongolia
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Condition	#Alkaline	-
#Condition	#Saline	-
#Engineered	#Agriculture	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43863]	16S rRNA gene sequence	KX756571		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arenimonas soli CGMCC 1.15905	GCA_014643775	contig	GenBank	2269504 tax ID	*
[Ref.: #66792]	Arenimonas soli strain CGMCC 1.15905	2269504.3	wgs	PATRIC	2269504 tax ID	*

[Ref.: #43863]

GC-content

65.4 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Arenimonas soli strain CGMCC 1.15905 PATRIC: 2269504.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arenimonas soli strain CGMCC 1.15905 PATRIC: 2269504.3
[Ref.: #69480]	motile	no	84.917	yes
[Ref.: #69480]	gram-positive	no	98.46	no
[Ref.: #69480]	anaerobic	no	98.629	yes
[Ref.: #69480]	aerobic	yes	90.435	yes
[Ref.: #69480]	halophile	no	87.176	no
[Ref.: #69480]	spore-forming	no	98.178	no
[Ref.: #69480]	glucose-util	yes	78.583	no
[Ref.: #69480]	flagellated	no	93.124	no
[Ref.: #69480]	thermophile	no	97.896	yes
[Ref.: #69480]	glucose-ferment	no	88.139	yes

Availability in culture collections External links

[Ref.: #43863]

Culture collection no.

CGMCC 1.15905, KCTC 52420

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arenimonas soli sp. nov., isolated from saline-alkaline soil.	Xu L, Sun JQ, Liu X, Liu XZ, Qiao MQ, Wu XL	Int J Syst Evol Microbiol	10.1099/ijsem.0.002026	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43863

Lian Xu, Ji-Quan Sun, Xia Liu, Xiao Zhen Liu, Ming-Quan Qiao, Xiao-Lei Wu: Arenimonas soli sp. nov., isolated from saline–alkaline soil. IJSEM 67: 2829 - 2833 2017 ( DOI 10.1099/ijsem.0.002026 , PubMed 28853685 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Arenimonas soli strain CGMCC 1.15905

Arenimonas soli strain CGMCC 1.15905

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