Name: Fodinibius salicampi KHM44
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140954

Type strain:

Species: Fodinibius salicampi

Strain Designation: KHM44

Culture col. no.: KACC 19060, NBRC 112531

NCBI tax ID(s): 1920655 (species)

Section

Fodinibius salicampi KHM44 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from sediment of crystallizing pond, Sinui island, Shinan, Korea.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Balneolota*
	Class	*Balneolia*
	Order	*Balneolales*
	Family	*Balneolaceae*
	Genus	*Fodinibius*
	Species	**Fodinibius salicampi**
	Full Scientific Name (LPSN)	Fodinibius salicampi (Cho et al. 2017) Galisteo et al. 2023

Synonym

Aliifodinibius salicampi

Information on morphological and physiological properties Morphology

[Ref.: #43855]	Gram stain	negative

[Ref.: #43855]	Cell length	0.6-1.0 µm

[Ref.: #43855]	Cell width	0.2-0.4 µm

[Ref.: #43855]	Cell shape	rod-shaped

[Ref.: #43855]	Motility	no

[Ref.: #43855]	Colony color	salmon-pink
[Ref.: #43855]	Colony shape	circular
[Ref.: #43855]	Incubation period	5 days
[Ref.: #43855]	Cultivation medium used	Marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43855]

Culture medium

Marine agar (MA)

[Ref.: #43855]

Culture medium growth

[Ref.: #43855]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #43855]			growth	15-50 °C
[Ref.: #43855]			optimum	37 °C

[Ref.: #43855]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43855]			optimum	8
[Ref.: #43855]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43855]

Oxygen tolerance

aerobe

[Ref.: #43855]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43855]		NaCl		growth	3-25	%(w/v)
[Ref.: #43855]		NaCl		optimum	10	%(w/v)

[Ref.: #43855]

Observation

quinone MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43855]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43855]	2-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #43855]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43855]	5-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #43855]	amygdalin ChEBI	-	builds acid from
[Ref.: #43855]	amygdalin ChEBI	-	carbon source
[Ref.: #43855]	arbutin ChEBI	-	builds acid from
[Ref.: #43855]	arbutin ChEBI	-	carbon source
[Ref.: #43855]	casein	-	hydrolysis
[Ref.: #43855]	cellobiose ChEBI	-	builds acid from
[Ref.: #43855]	cellobiose ChEBI	-	carbon source
[Ref.: #43855]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43855]	D-arabinose ChEBI	-	carbon source
[Ref.: #43855]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43855]	D-arabitol ChEBI	-	carbon source
[Ref.: #43855]	D-fructose ChEBI	-	builds acid from
[Ref.: #43855]	D-fructose ChEBI	-	carbon source
[Ref.: #43855]	D-fucose ChEBI	-	builds acid from
[Ref.: #43855]	D-fucose ChEBI	-	carbon source
[Ref.: #43855]	D-galactose ChEBI	-	builds acid from
[Ref.: #43855]	D-galactose ChEBI	-	carbon source
[Ref.: #43855]	D-glucose ChEBI	-	builds acid from
[Ref.: #43855]	D-glucose ChEBI	-	carbon source
[Ref.: #43855]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43855]	D-lyxose ChEBI	-	carbon source
[Ref.: #43855]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43855]	D-mannitol ChEBI	-	carbon source
[Ref.: #43855]	D-mannose ChEBI	-	carbon source
[Ref.: #43855]	D-mannose ChEBI	+	builds acid from
[Ref.: #43855]	D-ribose ChEBI	-	builds acid from
[Ref.: #43855]	D-ribose ChEBI	-	carbon source
[Ref.: #43855]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43855]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43855]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43855]	D-tagatose ChEBI	-	carbon source
[Ref.: #43855]	D-xylose ChEBI	-	carbon source
[Ref.: #43855]	D-xylose ChEBI	+	builds acid from
[Ref.: #43855]	dna ChEBI	-	hydrolysis
[Ref.: #43855]	erythritol ChEBI	-	builds acid from
[Ref.: #43855]	erythritol ChEBI	-	carbon source
[Ref.: #43855]	esculin ChEBI	-	carbon source
[Ref.: #43855]	esculin ChEBI	+	builds acid from
[Ref.: #43855]	esculin ChEBI	+	hydrolysis
[Ref.: #43855]	galactitol ChEBI	-	builds acid from
[Ref.: #43855]	galactitol ChEBI	-	carbon source
[Ref.: #43855]	gelatin ChEBI	+	hydrolysis
[Ref.: #43855]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43855]	gentiobiose ChEBI	-	carbon source
[Ref.: #43855]	gluconate ChEBI	-	builds acid from
[Ref.: #43855]	gluconate ChEBI	-	carbon source
[Ref.: #43855]	glycerol ChEBI	-	builds acid from
[Ref.: #43855]	glycerol ChEBI	-	carbon source
[Ref.: #43855]	glycogen ChEBI	-	builds acid from
[Ref.: #43855]	glycogen ChEBI	-	carbon source
[Ref.: #43855]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43855]	inulin ChEBI	-	builds acid from
[Ref.: #43855]	inulin ChEBI	-	carbon source
[Ref.: #43855]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43855]	L-arabinose ChEBI	-	carbon source
[Ref.: #43855]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43855]	L-arabitol ChEBI	-	carbon source
[Ref.: #43855]	L-fucose ChEBI	-	builds acid from
[Ref.: #43855]	L-fucose ChEBI	-	carbon source
[Ref.: #43855]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43855]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43855]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43855]	L-sorbose ChEBI	-	carbon source
[Ref.: #43855]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #43855]	L-xylose ChEBI	-	builds acid from
[Ref.: #43855]	L-xylose ChEBI	-	carbon source
[Ref.: #43855]	lactose ChEBI	-	builds acid from
[Ref.: #43855]	lactose ChEBI	-	carbon source
[Ref.: #43855]	maltose ChEBI	-	builds acid from
[Ref.: #43855]	maltose ChEBI	-	carbon source
[Ref.: #43855]	melezitose ChEBI	-	builds acid from
[Ref.: #43855]	melezitose ChEBI	-	carbon source
[Ref.: #43855]	melibiose ChEBI	-	builds acid from
[Ref.: #43855]	melibiose ChEBI	-	carbon source
[Ref.: #43855]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43855]	methyl alpha-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #43855]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43855]	methyl alpha-D-mannoside ChEBI	-	carbon source
[Ref.: #43855]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43855]	methyl beta-D-xylopyranoside ChEBI	-	carbon source
[Ref.: #43855]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43855]	myo-inositol ChEBI	-	carbon source
[Ref.: #43855]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43855]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43855]	nitrate ChEBI	-	reduction
[Ref.: #43855]	raffinose ChEBI	-	builds acid from
[Ref.: #43855]	raffinose ChEBI	-	carbon source
[Ref.: #43855]	ribitol ChEBI	-	builds acid from
[Ref.: #43855]	ribitol ChEBI	-	carbon source
[Ref.: #43855]	salicin ChEBI	-	builds acid from
[Ref.: #43855]	salicin ChEBI	-	carbon source
[Ref.: #43855]	starch ChEBI	-	builds acid from
[Ref.: #43855]	starch ChEBI	-	carbon source
[Ref.: #43855]	starch ChEBI	-	hydrolysis
[Ref.: #43855]	sucrose ChEBI	-	builds acid from
[Ref.: #43855]	sucrose ChEBI	-	carbon source
[Ref.: #43855]	trehalose ChEBI	-	builds acid from
[Ref.: #43855]	trehalose ChEBI	-	carbon source
[Ref.: #43855]	turanose ChEBI	-	builds acid from
[Ref.: #43855]	turanose ChEBI	-	carbon source
[Ref.: #43855]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43855]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43855]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43855]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43855]	urea ChEBI	-	hydrolysis
[Ref.: #43855]	xanthine ChEBI	-	hydrolysis
[Ref.: #43855]	xylitol ChEBI	-	builds acid from
[Ref.: #43855]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43855]	amikacin ChEBI				yes	30	µg (disc)
[Ref.: #43855]	amoxicillin ChEBI	yes	10	µg (disc)
[Ref.: #43855]	apramycin ChEBI				yes	30	µg (disc)
[Ref.: #43855]	bacitracin ChEBI	yes	10	Unit (disc)
[Ref.: #43855]	capreomycin ChEBI	yes	30	µg (disc)
[Ref.: #43855]	chloramphenicol ChEBI				yes	30	µg (disc)
[Ref.: #43855]	cycloheximide ChEBI	yes	30	µg (disc)
[Ref.: #43855]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43855]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #43855]	gramicidin s ChEBI	yes	30	µg (disc)
[Ref.: #43855]	hygromycin ChEBI				yes	30	µg (disc)
[Ref.: #43855]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43855]	lincomycin ChEBI	yes	15	µg (disc)
[Ref.: #43855]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #43855]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43855]	nystatin ChEBI				yes	50	µg (disc)
[Ref.: #43855]	oleandomycin ChEBI	yes	15	µg (disc)
[Ref.: #43855]	penicillin ChEBI	yes	10	Unit (disc)
[Ref.: #43855]	polymyxin b ChEBI				yes	100	Unit (disc)
[Ref.: #43855]	rifampicin ChEBI	yes	10	µg (disc)
[Ref.: #43855]	roxithromycin ChEBI	yes	15	µg (disc)
[Ref.: #43855]	salinomycin ChEBI	yes	30	µg (disc)
[Ref.: #43855]	sisomycin ChEBI				yes	10	µg (disc)
[Ref.: #43855]	sphingomyelin ChEBI				yes	30	µg (disc)
[Ref.: #43855]	spiramycin ChEBI	yes	100	µg (disc)
[Ref.: #43855]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43855]	teicoplanin ChEBI	yes	30	µg (disc)
[Ref.: #43855]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #43855]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43855]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43855]	acid phosphatase	-	3.1.3.2
[Ref.: #43855]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43855]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43855]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43855]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43855]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43855]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43855]	beta-galactosidase	+	3.2.1.23
[Ref.: #43855]	beta-glucosidase	-	3.2.1.21
[Ref.: #43855]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43855]	catalase	+	1.11.1.6
[Ref.: #43855]	cystine arylamidase	-	3.4.11.3
[Ref.: #43855]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43855]	esterase (C 4)	+
[Ref.: #43855]	esterase Lipase (C 8)	+
[Ref.: #43855]	leucine arylamidase	+	3.4.11.1
[Ref.: #43855]	lipase (C 14)	-
[Ref.: #43855]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43855]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43855]	trypsin	+	3.4.21.4
[Ref.: #43855]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43855]

Fatty acid	Percentage
C15:0 iso	29.5
C16:1ω7c / C15:0 iso 2OH	22.7
C17:1 iso ω9c	10.3
C15:0 anteiso	7.4
C16:0 iso	3.8
C15:0	3.6
C16:0	2.8
C15:1ω6c	2.8
C16:1ω5c	2.3
C17:1ω8c	2.2
C17:0 iso	2
C17:0 iso 3OH	1.6
C17:1ω6c	1.5
C17:0 anteiso	1.3
C17:1 anteiso ω9c	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43855]	Sample type/isolated from	sediment of crystallizing pond, Sinui island, Shinan, Korea
[Ref.: #43855]	Geographic location (country and/or sea, region)	Sinui island, Shinan
[Ref.: #43855]	Country	Republic of Korea
[Ref.: #43855]	Country ISO 3 Code	KOR
[Ref.: #43855]	Continent	Asia
[Ref.: #43855]	Geographic location	34.5680°/126.0840°
[Ref.: #43855]	Enrichment culture	Marine agar
[Ref.: #43855]	Enrichment culture composition	addition of 8% (w/v) NaCl (final concentration, 9,95% (w/v) NaCl), pH 7.0
[Ref.: #43855]	Enrichment culture duration	7 days
[Ref.: #43855]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Condition	#Saline	-
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC198077 (>99% sequence identity) for Aliifodinibius from Microbeatlas

Aquatic Samples	50
Soil Samples	30
Animal Samples	2
Plant Samples	1
Total Samples	83

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43855]	16S rRNA gene sequence	LC198077		GenBank

[Ref.: #43855]

GC-content

48.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43855]

Culture collection no.

KACC 19060, NBRC 112531

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliifodinibius salipaludis sp. nov., Isolated from Saline-Alkaline Soil.	Zhao X, Miao S, Sun Y, Gong Q, Zhao J, Wang J, Zhang G	Curr Microbiol	10.1007/s00284-019-01863-w	2020	*
Phylogeny	Aliifodinibius salicampi sp. nov., a moderately halophilic bacterium isolated from a grey saltern.	Cho GY, Lee JC, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001981	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43855

Geon-Yeong Cho, Jae-Chan Lee, Kyung Sook Whang: Aliifodinibius salicampi sp. nov., a moderately halophilic bacterium isolated from a grey saltern. IJSEM 67: 2598 - 2603 2017 ( DOI 10.1099/ijsem.0.001981 , PubMed 28758626 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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