Name: Conyzicola nivalis ZD5-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140951

Type strain:

Species: Conyzicola nivalis

Strain Designation: ZD5-4

Culture col. no.: JCM 30076, CGMCC 1.12813

Strain history: Z. Gu and Y. Liu ZD5-4.

NCBI tax ID(s): 1477021 (species)

Section

Conyzicola nivalis ZD5-4 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from snow of the Zadang Glacier on the Qinghai- Tibetan Plateau in PR China.

colony-forming
Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Conyzicola*
	Species	**Conyzicola nivalis**
	Full Scientific Name (LPSN)	Conyzicola nivalis Gu et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43849]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43849]	Cell length	1.3-1.9 µm

[Ref.: #43849]	Cell width	0.3-0.8 µm

[Ref.: #43849]	Cell shape	rod-shaped

[Ref.: #43849]	Motility	no

[Ref.: #43849]	Colony color	yellow
[Ref.: #43849]	Colony shape	circular
[Ref.: #43849]	Incubation period	7 days
[Ref.: #43849]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43849]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43849]

Culture medium growth

		Temperature
[Ref.: #43849]	growth	0-40 °C
[Ref.: #43849]	optimum	14 °C
[Ref.: #67770]	growth	20 °C

[Ref.: #43849]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #43849]			optimum	6.0-8.0
[Ref.: #43849]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43849]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.947

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43849]		NaCl		optimum	0-2	%(w/v)
[Ref.: #43849]		NaCl		growth	0-6	%(w/v)

[Ref.: #43849]	Observation	quinone MK-9
[Ref.: #43849]	Observation	quimone MK-10
[Ref.: #43849]	Observation	quinone MK-11
[Ref.: #67770]	Observation	quinones: MK-9, MK-10, MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43849]	adipate ChEBI	-	assimilation
[Ref.: #43849]	cellobiose ChEBI	+	builds acid from
[Ref.: #43849]	D-fructose ChEBI	+	builds acid from
[Ref.: #43849]	D-glucose ChEBI	+	assimilation
[Ref.: #43849]	D-mannitol ChEBI	+	assimilation
[Ref.: #43849]	D-mannose ChEBI	+	assimilation
[Ref.: #43849]	D-mannose ChEBI	+	builds acid from
[Ref.: #43849]	D-xylose ChEBI	+	builds acid from
[Ref.: #43849]	decanoate ChEBI	-	assimilation
[Ref.: #43849]	esculin ChEBI	+	builds acid from
[Ref.: #43849]	esculin ChEBI	+	hydrolysis
[Ref.: #43849]	galactose ChEBI	+	builds acid from
[Ref.: #43849]	gelatin ChEBI	-	hydrolysis
[Ref.: #43849]	gluconate ChEBI	-	assimilation
[Ref.: #43849]	glucose ChEBI	-	fermentation
[Ref.: #43849]	glucose ChEBI	+	builds acid from
[Ref.: #43849]	glycerol ChEBI	+	builds acid from
[Ref.: #43849]	inulin ChEBI	-	builds acid from
[Ref.: #43849]	L-arabinose ChEBI	+	assimilation
[Ref.: #43849]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43849]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #43849]	lactose ChEBI	-	builds acid from
[Ref.: #43849]	malate ChEBI	-	assimilation
[Ref.: #43849]	maltose ChEBI	+	assimilation
[Ref.: #43849]	maltose ChEBI	+	builds acid from
[Ref.: #43849]	melezitose ChEBI	-	builds acid from
[Ref.: #43849]	melibiose ChEBI	-	builds acid from
[Ref.: #43849]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43849]	phenylacetate ChEBI	-	assimilation
[Ref.: #43849]	potassium gluconate ChEBI	+	assimilation
[Ref.: #43849]	raffinose ChEBI	-	builds acid from
[Ref.: #43849]	ribitol ChEBI	-	builds acid from
[Ref.: #43849]	sodium citrate ChEBI	-	assimilation
[Ref.: #43849]	sorbose ChEBI	-	builds acid from
[Ref.: #43849]	sucrose ChEBI	+	builds acid from
[Ref.: #43849]	trehalose ChEBI	+	builds acid from
[Ref.: #43849]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43849]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43849]	acid phosphatase	+	3.1.3.2
[Ref.: #43849]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43849]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43849]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43849]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43849]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43849]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43849]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43849]	catalase	+	1.11.1.6
[Ref.: #43849]	cystine arylamidase	+	3.4.11.3
[Ref.: #43849]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43849]	esterase (C 4)	+
[Ref.: #43849]	esterase Lipase (C 8)	+
[Ref.: #43849]	leucine arylamidase	+	3.4.11.1
[Ref.: #43849]	lipase (C 14)	+
[Ref.: #43849]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43849]	trypsin	+	3.4.21.4
[Ref.: #43849]	urease	-	3.5.1.5
[Ref.: #43849]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43849]

Fatty acid	Percentage
C15:0 anteiso	56.2
C16:0 iso	19.09
C15:1 anteiso A	7.57
C14:0 iso	7.33
C17:0 anteiso	4.22
C16:0	3.15

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43849]	Sample type/isolated from	snow of the Zadang Glacier on the Qinghai- Tibetan Plateau in PR China
[Ref.: #43849]	Geographic location (country and/or sea, region)	Zadang glacier, Qinghai- Tibetan Platea
[Ref.: #43849]	Country	China
[Ref.: #43849]	Country ISO 3 Code	CHN
[Ref.: #43849]	Continent	Asia
[Ref.: #43849]	Geographic location	30.4700°/90.6500°
[Ref.: #43849]	Enrichment culture	R2A agar
[Ref.: #43849]	Enrichment culture duration	30 days
[Ref.: #43849]	Enrichment culture temperature	4 ̊C

[Ref.: #67770]	Sample type/isolated from	Snow of the Zadang Glacier on the Tibetan Plateau
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Glacier

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ095109 (>99% sequence identity) for Microbacteriaceae from Microbeatlas

Aquatic Samples	328
Soil Samples	828
Animal Samples	750
Plant Samples	451
Total Samples	2357

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43849]	16S rRNA gene sequence	KJ095109		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Conyzicola nivalis CGMCC 1.12813	GCA_014639655	scaffold	GenBank	1477021 tax ID	*
[Ref.: #66792]	Conyzicola nivalis strain CGMCC 1.12813	1477021.3	wgs	PATRIC	1477021 tax ID	*

[Ref.: #67770]

GC-content

67.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Conyzicola nivalis CGMCC 1.12813 NCBI: GCA_014639655.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Conyzicola nivalis CGMCC 1.12813 NCBI: GCA_014639655.1
[Ref.: #69480]	flagellated	no	92.768	yes
[Ref.: #69480]	gram-positive	yes	91.971	no
[Ref.: #69480]	anaerobic	no	99.394	yes
[Ref.: #69480]	aerobic	yes	93.859	yes
[Ref.: #69480]	halophile	no	90.213	no
[Ref.: #69480]	spore-forming	no	93.201	no
[Ref.: #69480]	glucose-util	yes	88.386	yes
[Ref.: #69480]	thermophile	no	99.764	yes
[Ref.: #69480]	motile	yes	62.781	no
[Ref.: #69480]	glucose-ferment	no	85.371	no

Availability in culture collections External links

[Ref.: #43849]

Culture collection no.

JCM 30076, CGMCC 1.12813

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Conyzicola nivalis sp. nov., isolated from glacial snow, and emended description of the genus Conyzicola and Conyzicola lurida.	Gu Z, Liu Y, Xu B, Wang N, Shen L, Liu H, Zhou Y, Xing T, Guo B, Liu X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002027	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43849

Zhengquan Gu, Yongqin Liu, Baiqing Xu, Ninglian Wang, Liang Shen, Hongcan Liu, Yuguang Zhou, Tingting Xing, Bixi Guo, Xiaobo Liu: Description of Conyzicola nivalis sp. nov., isolated from glacial snow, and emended description of the genus Conyzicola and Conyzicola lurida. IJSEM 67: 2818 - 2822 2017 ( DOI 10.1099/ijsem.0.002027 , PubMed 28820090 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Conyzicola nivalis CGMCC 1.12813

Conyzicola nivalis CGMCC 1.12813

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