Pseudopedobacter saltans (DSM 12145, CCUG 39354, CIP 105500)

Name: Pseudopedobacter saltans (DSM 12145, CCUG 39354, CIP 105500)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14095

Type strain

Strain Designation 113

Culture col. no. DSM 12145 CCUG 39354 CIP 105500 JCM 21818 LMG 10337 7 more

NCBI tax ID(s) 762903 151895

Special Collections DSMZ CCUG JCM CIP

Links

Pseudopedobacter saltans 113 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from soil.

Gram-negative rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 11927

LMG 10337,ATCC 51119,CIP 105500,DSM 12145,LMG 9526,NCIMB 13643,CCUG 39354,NBRC 100064,JCM 21818,IAM 15374

@ref 20215

Last LPSN update 2025-12-16 09:50:15

Domain Pseudomonadati

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Pseudopedobacter

Species Pseudopedobacter saltans

Full scientific name Pseudopedobacter saltans (Steyn et al. 1998) Cao et al. 2014

Synonyms (1)

Pedobacter saltans

Morphology

Cell morphology

@ref	Gram stain	Cell shape
122408	negative	rod-shaped
125439	negative
125438
125438	negative

Pigmentation

@ref	Production	Name
122408		Pyocyanin

Multimedia

@ref:	66793
multimedia content:	EM_DSM_12145_1.jpg
multimedia.multimedia content:	EM_DSM_12145_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4555	OXOID NUTRIENT BROTH (DSMZ Medium 948)	Medium recipe at MediaDive	Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water
36468	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
122408	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4555	positive	growth	28	mesophilic
36468	positive	growth	25	mesophilic
67770	positive	growth	25	mesophilic
122408	positive	growth	25-41
122408	negative	growth	5
122408	negative	growth	10

Physiology and metabolism

Oxygen tolerance

122408

Oxygen toleranceobligate aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
122408	NaCl	positive	growth	0-4 %
122408	NaCl		growth	6 %
122408	NaCl		growth	8 %
122408	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
122408	16947 ChEBI	citrate	-	carbon source
122408	4853 ChEBI	esculin	+	hydrolysis
122408	17632 ChEBI	nitrate	-	reduction
122408	17632 ChEBI	nitrate	-	respiration
122408	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
122408	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122408	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122408	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122408	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
122408	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122408	caseinase	-	3.4.21.50
122408	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
122408	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122408	gelatinase	-
122408	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
122408	lipase	-
68382	lipase (C 14)	-		from API zym
122408	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122408	ornithine decarboxylase	-	4.1.1.17
122408	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
122408	tryptophan deaminase	-
122408	tween esterase	-
122408	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	kanosamine biosynthesis II	100	2 of 2
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	acetate fermentation	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	sulfopterin metabolism	100	4 of 4
66794	NAD metabolism	94.44	17 of 18
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	d-mannose degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	peptidoglycan biosynthesis	80	12 of 15
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	flavin biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	starch degradation	80	8 of 10
66794	heme metabolism	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	purine metabolism	71.28	67 of 94
66794	pyrimidine metabolism	71.11	32 of 45
66794	phenylalanine metabolism	69.23	9 of 13
66794	octane oxidation	66.67	2 of 3
66794	sphingosine metabolism	66.67	4 of 6
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	vitamin B6 metabolism	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	lipid metabolism	61.29	19 of 31
66794	degradation of hexoses	61.11	11 of 18
66794	degradation of pentoses	60.71	17 of 28
66794	non-pathway related	60.53	23 of 38
66794	lipoate biosynthesis	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	coenzyme M biosynthesis	60	6 of 10
66794	glycine betaine biosynthesis	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	histidine metabolism	58.62	17 of 29
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	cysteine metabolism	55.56	10 of 18
66794	tryptophan metabolism	55.26	21 of 38
66794	proline metabolism	54.55	6 of 11
66794	metabolism of disaccharids	54.55	6 of 11
66794	leucine metabolism	53.85	7 of 13
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	propionate fermentation	50	5 of 10
66794	lysine metabolism	50	21 of 42
66794	ethanol fermentation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	degradation of sugar acids	48	12 of 25
66794	sulfate reduction	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	ascorbate metabolism	45.45	10 of 22
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	glycine metabolism	40	4 of 10
66794	myo-inositol biosynthesis	40	4 of 10
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	3-chlorocatechol degradation	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	oxidative phosphorylation	39.56	36 of 91
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	tyrosine metabolism	35.71	5 of 14
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	cyanate degradation	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	arachidonic acid metabolism	33.33	6 of 18
66794	allantoin degradation	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	sulfoquinovose degradation	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	urea cycle	30.77	4 of 13
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	glutathione metabolism	28.57	4 of 14
66794	carotenoid biosynthesis	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	chlorophyll metabolism	22.22	4 of 18
66794	polyamine pathway	21.74	5 of 23
66794	vitamin B12 metabolism	20.59	7 of 34

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122408	-	+	+	+	-	+	-	-	-	-	+	+	-	+	-	+	+	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122408	not determinedn.d.	+	+	+	-	+	-	+	+	-	+	+	+	+	-	-	+	+	-	+	-	+	+	+	+	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
4555	soil	Iceland	ISL	Europe
54759	Soil	Iceland	ISL	Europe
67770	Soil	Iceland	ISL	Europe
122408	Environment, Soil	Iceland	ISL	Europe

Taxonmaps

69479

Global distribution of 16S sequence NR_074586 (>99% sequence identity) for Pseudopedobacter saltans subclade from Microbeatlas

Aquatic Samples	441
Soil Samples	448
Animal Samples	283
Plant Samples	79
Total Samples	1251

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4555	1	Risk group (German classification) According to TRBA 466
122408	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM19073v2 assembly for Pseudopedobacter saltans DSM 12145	complete	GCA_000190735	762903.4	649633082	762903	99.56

Genome browser: GCA_000190735

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pedobacter saltans strain LMG 10337 16S ribosomal RNA gene, partial sequence	AF329958	680	762903
20218	Pedobacter saltans partial 16S rRNA gene, strain DSM 12145T	AJ438173	1479	762903
4555	Pseudopedobacter saltans DSM 12145 16S ribosomal RNA, partial sequence	NR_074586	1517	762903
67770	Pedobacter saltans gene for 16S rRNA, partial sequence, strain: NBRC 100064	AB681143	1454	151895

GC content

@ref	GC-content (mol%)
4555	37.0
4555	36.6
67770	37

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pedobacter saltans DSM 12145
PATRIC: 762903.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	82.40	no
125439	motility	BacteriaNetⓘ	no	65.70	no
125439	gram_stain	BacteriaNetⓘ	negative	91.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	79.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudopedobacter saltans DSM 12145 DSM 12145
NCBI: GCA_000190735.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.71	no
125438	anaerobic	anaerobicⓘ	no	94.47	no
125438	aerobic	aerobicⓘ	yes	80.11	yes
125438	spore-forming	spore-formingⓘ	no	87.00	no
125438	thermophilic	thermophileⓘ	no	96.44	yes
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Fruity sourdough and yeast-leavened breads produced with Companilactobacillus crustorum and Wickerhamomyces anomalus.	Pradal I, De Vuyst L.	Food Res Int	10.1016/j.foodres.2025.117407	2025
	Companilactobacillus crustorum LMG 23699 and Wickerhamomyces anomalus IMDO 010110 form a candidate, stable, mixed-strain starter culture for sourdough production.	Pradal I, Gonzalez-Alonso V, Wardhana YR, De Vuyst L.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2025.111278	2025
	Salinity-driven shifts in estuarine viral community composition and diversity near the Shenzhen coast.	Hussain S, Wang X, Pan C, Chen S, Xie J, Mahtab N, Hou S, Li S.	Appl Environ Microbiol	10.1128/aem.00407-25	2025
Metabolism	Lemon juice and apple juice used as source of citrate and malate, respectively, enhance the formation of buttery aroma compounds and/or organic acids during Type 2 and Type 3 sourdough productions performed with Companilactobacillus crustorum LMG 23699.	Comasio A, Van Kerrebroeck S, De Vuyst L.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2020.109020	2021
Phylogeny	Reclassification of Burkholderia insecticola as Caballeronia insecticola comb. nov. and reliability of conserved signature indels as molecular synapomorphies.	Dobritsa AP, Samadpour M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003431	2019
	Coculture fermentation processes in wheat sourdough simulation media with Companilactobacillus crustorum LMG 23699 and Wickerhamomyces anomalus IMDO 010110 reflect their competitiveness and desirable traits for sourdough and sourdough bread production.	Pradal I, Kaesemans J, Gettemans T, Gonzalez-Alonso V, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.01325-25	2025
Metabolism	The addition of citrate stimulates the production of acetoin and diacetyl by a citrate-positive Lactobacillus crustorum strain during wheat sourdough fermentation.	Comasio A, Harth H, Weckx S, De Vuyst L.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2018.08.030	2019
	Exploration of Social Spreading Reveals That This Behavior Is Prevalent among Pedobacter and Pseudomonas fluorescens Isolates and That There Are Variations in the Induction of the Phenotype.	McCully LM, Graslie J, McGraw AR, Bitzer AS, Sigurbjornsdottir AM, Vilhelmsson O, Silby MW.	Appl Environ Microbiol	10.1128/aem.01344-21	2021
Proteome	Mix24X, a Lab-Assembled Reference to Evaluate Interpretation Procedures for Tandem Mass Spectrometry Proteotyping of Complex Samples.	Mappa C, Alpha-Bazin B, Pible O, Armengaud J.	Int J Mol Sci	10.3390/ijms24108634	2023
	Effect of lactic acid-rich sourdough bread on appetite regulation: A randomized, double-blind controlled trial.	Chatonidi G, Pradal I, De Vuyst L, Courtin CM, Verbeke K.	Curr Res Food Sci	10.1016/j.crfs.2024.100956	2025
	T9GPred: A Comprehensive Computational Tool for the Prediction of Type 9 Secretion System, Gliding Motility, and the Associated Secreted Proteins.	Sahoo AK, Vivek-Ananth RP, Chivukula N, Rajaram SV, Mohanraj K, Khare D, Acharya C, Samal A.	ACS Omega	10.1021/acsomega.3c05155	2023
Metabolism	Prevalence and impact of single-strain starter cultures of lactic acid bacteria on metabolite formation in sourdough.	Ravyts F, De Vuyst L.	Food Microbiol	10.1016/j.fm.2011.03.004	2011
	Organoarsenical tolerance in Sphingobacterium wenxiniae, a bacterium isolated from activated sludge.	Chen J, Zhang J, Rosen BP.	Environ Microbiol	10.1111/1462-2920.15599	2022
Enzymology	Characteristic flavor metabolic network of fish sauce microbiota with different fermentation processes based on metagenomics.	Han J, Kong T, Jiang J, Zhao X, Zhao X, Li P, Gu Q.	Front Nutr	10.3389/fnut.2023.1121310	2023
	Evaluation of Modulatory Activities of Lactobacillus crispatus Strains in the Context of the Vaginal Microbiota.	Argentini C, Fontana F, Alessandri G, Lugli GA, Mancabelli L, Ossiprandi MC, van Sinderen D, Ventura M, Milani C, Turroni F.	Microbiol Spectr	10.1128/spectrum.02733-21	2022
Genetics	Genome Sequencing Reveals the Complex Polysaccharide-Degrading Ability of Novel Deep-Sea Bacterium Flammeovirga pacifica WPAGA1.	Gao B, Jin M, Li L, Qu W, Zeng R.	Front Microbiol	10.3389/fmicb.2017.00600	2017
	Potential of Bacteria from Alternative Fermented Foods as Starter Cultures for the Production of Wheat Sourdoughs.	Comasio A, Van Kerrebroeck S, Harth H, Verte F, De Vuyst L.	Microorganisms	10.3390/microorganisms8101534	2020
	Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113).	Liolios K, Sikorski J, Lu M, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Ivanova N, Pagani I, Mavromatis K, Ovchinikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Kotsyurbenko O, Rohde M, Tindall BJ, Abt B, Goker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC.	Stand Genomic Sci	10.4056/sigs.2154937	2011
Enzymology	Primers for amplification of nitrous oxide reductase genes associated with Firmicutes and Bacteroidetes in organic-compound-rich soils.	Jung J, Choi S, Jung H, Scow KM, Park W.	Microbiology (Reading)	10.1099/mic.0.060194-0	2013
Biotechnology	Biologically Active Supplements Affecting Producer Microorganisms in Food Biotechnology: A Review.	Dysin AP, Egorov AR, Godzishevskaya AA, Kirichuk AA, Tskhovrebov AG, Kritchenkov AS.	Molecules	10.3390/molecules28031413	2023
Genetics	Sugar Lego: gene composition of bacterial carbohydrate metabolism genomic loci.	Kaznadzey A, Shelyakin P, Gelfand MS.	Biol Direct	10.1186/s13062-017-0200-7	2017
Genetics	Diverse Microbial Composition of Sourdoughs From Different Origins.	Comasio A, Verce M, Van Kerrebroeck S, De Vuyst L.	Front Microbiol	10.3389/fmicb.2020.01212	2020
Metabolism	Siderophores from neighboring organisms promote the growth of uncultured bacteria.	D'Onofrio A, Crawford JM, Stewart EJ, Witt K, Gavrish E, Epstein S, Clardy J, Lewis K.	Chem Biol	10.1016/j.chembiol.2010.02.010	2010
	Maribacter aquimaris sp. nov., isolated from seawater adjacent to Fildes Peninsula, Antarctica.	Zhang Y, Zhai Y, Mu L, Hu M, Fang W, Xiao Y, Fang Z.	Antonie Van Leeuwenhoek	10.1007/s10482-023-01844-x	2023
Phylogeny	Lentibacillus saliphilus. sp. nov., a moderately halophilic bacterium isolated from a saltern in Korea.	Wang Y, Jiang GQ, Lin HP, Sun P, Zhang HY, Lu DM, Wang LY, Kim CJ, Tang SK.	Arch Microbiol	10.1007/s00203-020-02043-2	2021
Phylogeny	Lactobacilus nuruki sp. nov., isolated from Nuruk, a Korean fermentation starter.	Heo J, Saitou S, Tamura T, Cho H, Kim JS, Joa JH, Kim JS, Kwon SW, Kim SJ.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002976	2018
Phylogeny	Burkholderia insecticola sp. nov., a gut symbiotic bacterium of the bean bug Riptortus pedestris.	Takeshita K, Tamaki H, Ohbayashi T, Meng XY, Sone T, Mitani Y, Peeters C, Kikuchi Y, Vandamme P.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002848	2018
Phylogeny	Amylibacter ulvae sp. nov., a new alphaproteobacterium isolated from the Pacific green alga Ulva fenestrata.	Nedashkovskaya OI, Kukhlevskiy AD, Zhukova NV, Kim SB.	Arch Microbiol	10.1007/s00203-015-1185-1	2016
Phylogeny	Pedobacter daejeonensis sp. nov. and Pedobacter trunci sp. nov., isolated from an ancient tree trunk, and emended description of the genus Pedobacter.	Du J, Singh H, Ngo HTT, Won KH, Kim KY, Yi TH.	Int J Syst Evol Microbiol	10.1099/ijs.0.000087	2015
Phylogeny	Pseudogracilibacillus auburnensis gen. nov., sp. nov., isolated from the rhizosphere of Zea mays.	Glaeser SP, McInroy JA, Busse HJ, Kampfer P.	Int J Syst Evol Microbiol	10.1099/ijs.0.064584-0	2014
Phylogeny	Lactobacillus heilongjiangensis sp. nov., isolated from Chinese pickle.	Gu CT, Li CY, Yang LJ, Huo GC.	Int J Syst Evol Microbiol	10.1099/ijs.0.053355-0	2013
Phylogeny	Aquibacillus halophilus gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Virgibacillus koreensis as Aquibacillus koreensis comb. nov. and Virgibacillus albus as Aquibacillus albus comb. nov.	Amoozegar MA, Bagheri M, Didari M, Mehrshad M, Schumann P, Sproer C, Sanchez-Porro C, Ventosa A.	Int J Syst Evol Microbiol	10.1099/ijs.0.065375-0	2014
Phylogeny	Virgibacillus alimentarius sp. nov., isolated from a traditional Korean food.	Kim J, Jung MJ, Roh SW, Nam YD, Shin KS, Bae JW.	Int J Syst Evol Microbiol	10.1099/ijs.0.028191-0	2011
Phylogeny	Glaciimonas immobilis gen. nov., sp. nov., a member of the family Oxalobacteraceae isolated from alpine glacier cryoconite.	Zhang DC, Redzic M, Schinner F, Margesin R.	Int J Syst Evol Microbiol	10.1099/ijs.0.028001-0	2011
Phylogeny	Virgibacillus byunsanensis sp. nov., isolated from a marine solar saltern.	Yoon JH, Kang SJ, Jung YT, Lee KC, Oh HW, Oh TK.	Int J Syst Evol Microbiol	10.1099/ijs.0.009837-0	2010
Phylogeny	Pseudopedobacter beijingensis gen. nov., sp. nov., isolated from coking wastewater activated sludge, and reclassification of Pedobacter saltans as Pseudopedobacter saltans comb. nov.	Cao J, Lai Q, Li G, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.053991-0	2014
Phylogeny	Parapedobacter koreensis gen. nov., sp. nov.	Kim MK, Na JR, Cho DH, Soung NK, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.64677-0	2007

References

#4555	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12145
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36468	; Curators of the CIP;
#54759	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 39354
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122408	Collection of Institut Pasteur ; Curators of the CIP; CIP 105500
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudopedobacter saltans (DSM 12145, CCUG 39354, CIP 105500)

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