Name: Tagaea marina TT1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140937

Type strain:

Species: Tagaea marina

Strain Designation: TT1

Culture col. no.: JCM 18659, BCRC 80493

Strain history: W. Y. Shieh TT1.

NCBI tax ID(s): 1705616 (species)

Section

Tagaea marina TT1 is a chemoheterotroph, Gram-negative, motile bacterium that forms circular colonies and was isolated from Shallow coastal water of Anping Harbour.

colony-forming
Gram-negative
motile
rod-shaped
chemoheterotroph
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Rhodospirillaceae*
	Genus	*Tagaea*
	Species	**Tagaea marina**
	Full Scientific Name (LPSN)	Tagaea marina Jean et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43822]	Gram stain	negative

[Ref.: #43822]	Cell length	1.5-2.8 µm

[Ref.: #43822]	Cell width	0.6-0.8 µm

[Ref.: #43822]	Cell shape	rod-shaped

[Ref.: #43822]	Motility	yes

[Ref.: #43822]	Flagellum arrangement	monotrichous, polar

[Ref.: #43822]	Colony size	3-5 mm
[Ref.: #43822]	Colony color	Grey, non-luminescent
[Ref.: #43822]	Colony shape	circular
[Ref.: #43822]	Incubation period	3 days
[Ref.: #43822]	Cultivation medium used	PY agar plates

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43822]

Culture medium

PY agar plates

[Ref.: #43822]

Culture medium growth

		Temperature
[Ref.: #43822]	growth	20-42 °C
[Ref.: #43822]	optimum	30-35 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #43822]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #43822]		growth	6-9
[Ref.: #43822]	no	growth	5
[Ref.: #43822]	no	growth	10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43822]

Nutrition type

chemoheterotroph

[Ref.: #43822]	Type of spore	endospore
[Ref.: #43822]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43822]		NaCl		growth	1-10	%
[Ref.: #43822]		NaCl		optimum	2-4	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43822]	4-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #43822]	acetate ChEBI	-	carbon source
[Ref.: #43822]	agar ChEBI	-	hydrolysis
[Ref.: #43822]	alginate ChEBI	+	hydrolysis
[Ref.: #43822]	casein	-	hydrolysis
[Ref.: #43822]	cellobiose ChEBI	-	fermentation
[Ref.: #43822]	D-arabinose ChEBI	-	fermentation
[Ref.: #43822]	D-arabitol ChEBI	-	carbon source
[Ref.: #43822]	D-fructose ChEBI	-	fermentation
[Ref.: #43822]	D-galactose ChEBI	-	fermentation
[Ref.: #43822]	D-glucose ChEBI	-	fermentation
[Ref.: #43822]	D-mannitol ChEBI	-	fermentation
[Ref.: #43822]	D-mannose ChEBI	-	fermentation
[Ref.: #43822]	D-ribose ChEBI	-	fermentation
[Ref.: #43822]	D-sorbitol ChEBI	-	fermentation
[Ref.: #43822]	D-xylose ChEBI	-	fermentation
[Ref.: #43822]	dna ChEBI	-	hydrolysis
[Ref.: #43822]	esculin ChEBI	+	hydrolysis
[Ref.: #43822]	galactitol ChEBI	-	fermentation
[Ref.: #43822]	gelatin ChEBI	+	hydrolysis
[Ref.: #43822]	L-arabinose ChEBI	-	fermentation
[Ref.: #43822]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43822]	lactose ChEBI	-	fermentation
[Ref.: #43822]	maltose ChEBI	-	fermentation
[Ref.: #43822]	melezitose ChEBI	-	fermentation
[Ref.: #43822]	melibiose ChEBI	-	fermentation
[Ref.: #43822]	myo-inositol ChEBI	-	fermentation
[Ref.: #43822]	nitrate ChEBI	+	reduction
[Ref.: #43822]	propionate ChEBI	-	carbon source
[Ref.: #43822]	raffinose ChEBI	-	fermentation
[Ref.: #43822]	sodium chloride ChEBI	+	required for growth
[Ref.: #43822]	starch ChEBI	-	hydrolysis
[Ref.: #43822]	sucrose ChEBI	-	fermentation
[Ref.: #43822]	trehalose ChEBI	-	fermentation
[Ref.: #43822]	tween 40 ChEBI	-	carbon source
[Ref.: #43822]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43822]	urea ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43822]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43822]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43822]	cephalothin ChEBI				yes	30	µg (disc)
[Ref.: #43822]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43822]	clindamycin ChEBI				yes	2	µg (disc)
[Ref.: #43822]	colistin ChEBI				yes	10	µg (disc)
[Ref.: #43822]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43822]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43822]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43822]	lincomycin ChEBI				yes	2	µg (disc)
[Ref.: #43822]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #43822]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #43822]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #43822]	oxacillin ChEBI				yes	1	µg (disc)
[Ref.: #43822]	penicillin g ChEBI	yes	10	Unit (disc)
[Ref.: #43822]	polymyxin b ChEBI				yes	300	Unit (disc)
[Ref.: #43822]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43822]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43822]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43822]	acid phosphatase	+/-	3.1.3.2
[Ref.: #43822]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43822]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #43822]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43822]	beta-glucosidase	+/-	3.2.1.21
[Ref.: #43822]	catalase	+	1.11.1.6
[Ref.: #43822]	cystine arylamidase	+	3.4.11.3
[Ref.: #43822]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43822]	esterase (C 4)	+
[Ref.: #43822]	esterase Lipase (C 8)	+
[Ref.: #43822]	leucine arylamidase	+	3.4.11.1
[Ref.: #43822]	lipase (C 14)	-
[Ref.: #43822]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43822]	trypsin	+	3.4.21.4
[Ref.: #43822]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43822]	Sample type/isolated from	Shallow coastal water of Anping Harbour
[Ref.: #43822]	Geographic location (country and/or sea, region)	Tainan
[Ref.: #43822]	Country	Taiwan
[Ref.: #43822]	Country ISO 3 Code	TWN
[Ref.: #43822]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater collected from the shallow coastal region of Anping Harbour
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tainan
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT461820 (>99% sequence identity) for Tagaea marina subclade from Microbeatlas

Aquatic Samples	1306
Soil Samples	297
Animal Samples	149
Plant Samples	31
Total Samples	1783

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43822]	16S rRNA gene sequence	KT461820		GenBank

[Ref.: #43822]	GC-content	56.4 mol%
[Ref.: #67770]	GC-content	56.4 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43822]

Culture collection no.

JCM 18659, BCRC 80493

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tagaea marina gen. nov., sp. nov., a marine bacterium isolated from shallow coastal water.	Dar Jean W, Huang SP, Chen JS, Shieh WY	Int J Syst Evol Microbiol	10.1099/ijsem.0.000756	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43822

Wen Dar Jean, Ssu-Po Huang, Jwo-Sheng Chen, Wung Yang Shieh: Tagaea marina gen. nov., sp. nov., a marine bacterium isolated from shallow coastal water. IJSEM 66: 592 - 597 2016 ( DOI 10.1099/ijsem.0.000756 , PubMed 26558430 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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